Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01878
(355 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38426|TPS3_YEAST Alpha,alpha-trehalose-phosphate syntha... 31 0.77
sp|P38176|AVT5_YEAST Vacuolar amino acid transporter 5 29 2.9
sp|Q96JM2|ZN462_HUMAN Zinc finger protein 462 28 6.5
sp|Q5J2U8|MATK_DROLU Maturase K (Intron maturase) 28 8.5
sp|P31826|YDDA_ECOLI Inner membrane ABC transporter ATP-bin... 28 8.5
>sp|P38426|TPS3_YEAST Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 115 kDa
subunit (Trehalose-6-phosphate synthase)
(UDP-glucose-glucosephosphate glucosyltransferase)
Length = 1022
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 220 FCLVRYQCSEIHQHFDHIYKPPTAKFLQLTENLDFGNFPYLLSDY 86
FC Y+ S+ H I +PPT++ L L L N Y+LS +
Sbjct: 752 FC-ADYKASKKHLFIFKISEPPTSRMLSLLSELSSNNIVYVLSSF 795
>sp|P38176|AVT5_YEAST Vacuolar amino acid transporter 5
Length = 509
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +1
Query: 133 LTAEILQWVVYRYDQNADVSQNIDTEQDRKIFIKMGAHFMMTKAHIKLNTKRLYHADGYA 312
L +I+Q + YR D N SQ DR+++I + F+++ K + L +A A
Sbjct: 156 LVPQIVQSIFYRNDDNMSGSQEHHMFLDRRLYITLIIVFVISPLCFKRSLNSLRYASMIA 215
Query: 313 VRELLKVTTLL 345
+ + ++ L+
Sbjct: 216 IVSVAYLSGLI 226
>sp|Q96JM2|ZN462_HUMAN Zinc finger protein 462
Length = 1412
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 115 RSPNFQLTAEILQWVVYRYDQNADVSQNIDTEQDRKIF 228
R P+ ++TAE V+ +Q+AD+SQN D E+ +IF
Sbjct: 382 RHPSIKVTAEDF---VHDVEQSADISQN-DVEETSRIF 415
>sp|Q5J2U8|MATK_DROLU Maturase K (Intron maturase)
Length = 514
Score = 27.7 bits (60), Expect = 8.5
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Frame = +1
Query: 82 GYNRLISMENFRSPNFQLTAEILQWVVYRYDQNA------DVSQNIDTEQDRKIFIKMGA 243
G NR I +EN N + + ++ Y QN D QNI +KI+ ++ A
Sbjct: 38 GLNRTILLENAGYENKYNFLIVKRLIIRMYRQNQFILSTNDFQQNIFFASPQKIYSQVIA 97
Query: 244 HFMMTKAHIKLNTKRLYHADGYAVRE 321
I + + L+ +G +R+
Sbjct: 98 EVFSVIVEIPFSLRLLFSLEGKQIRK 123
>sp|P31826|YDDA_ECOLI Inner membrane ABC transporter ATP-binding protein yddA (CDS102)
Length = 561
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 127 FQLTAEILQWVVYRYDQNADVSQNID 204
F L + L W +Y+YD+ A+++ ID
Sbjct: 318 FMLVSNNLSWFIYKYDELAELAAVID 343
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,361,716
Number of Sequences: 369166
Number of extensions: 619685
Number of successful extensions: 1644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)