Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01875
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9HDY9|YK02_SCHPO Hypothetical serine/threonine-rich pro... 30 5.1
sp|P18494|GLN3_YEAST Nitrogen regulatory protein GLN3 30 5.1
>sp|Q9HDY9|YK02_SCHPO Hypothetical serine/threonine-rich protein P11E10.02c in chromosome
I precursor
Length = 1082
Score = 30.4 bits (67), Expect = 5.1
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 2 SSNNALHHRQPIIEPNTQDSASSAKNISDTYDSKNAGKVGATWSNVGSIDISLDSLGNRR 181
SS+N + +E +++SA I T D+K +G S+ SI +DS+GN
Sbjct: 37 SSSNLESCQSSPLEVGNIYNSTSASEILSTLDAKYITIIGVIGSSNSSIQDLIDSVGNSN 96
Query: 182 QKVGSAITSS 211
S TS+
Sbjct: 97 NAASSNPTST 106
>sp|P18494|GLN3_YEAST Nitrogen regulatory protein GLN3
Length = 730
Score = 30.4 bits (67), Expect = 5.1
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +2
Query: 2 SSNNALHHRQPIIEPNTQDSASSAKNISDTYDSKNAGKVGATWSNVGSIDISLDSLGNRR 181
++N HH I + +S+SSA NI++ +S N+ SI +S + N
Sbjct: 204 NTNAQSHHSFNIYKLQNNNSSSSAMNITNNNNSNNSNIQHPFLKKSDSIGLSSSNTTNSV 263
Query: 182 QKVGSAI--TSSKSLNQLQKQNSYNSNNANM 268
+K S I SS SL ++ S +S+ +NM
Sbjct: 264 RK-NSLIKPMSSTSLANFKRAASVSSSISNM 293
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,974,344
Number of Sequences: 369166
Number of extensions: 1474089
Number of successful extensions: 3683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3677
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)