Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01862
(710 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synth... 174 3e-43
sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synth... 172 8e-43
sp|P73283|FABF_SYNY3 3-oxoacyl-[acyl-carrier-protein] synth... 170 4e-42
sp|P0AAI5|FABF_ECOLI 3-oxoacyl-[acyl-carrier-protein] synth... 166 6e-41
sp|P56902|FABF_RHIME 3-oxoacyl-[acyl-carrier-protein] synth... 164 2e-40
sp|Q8L3X9|KASM_ARATH 3-oxoacyl-[acyl-carrier-protein] synth... 162 1e-39
sp|P63457|FAB2_MYCBO 3-oxoacyl-[acyl-carrier-protein] synth... 153 4e-37
sp|P39525|CEM1_YEAST 3-oxoacyl-[acyl-carrier-protein] synth... 152 1e-36
sp|P63455|FAB1_MYCBO 3-oxoacyl-[acyl-carrier-protein] synth... 148 2e-35
sp|P43710|FABB_HAEIN 3-oxoacyl-[acyl-carrier-protein] synth... 147 2e-35
>sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP
synthase II) (KAS II)
Length = 414
Score = 174 bits (440), Expect = 3e-43
Identities = 88/201 (43%), Positives = 123/201 (61%), Gaps = 4/201 (1%)
Frame = +1
Query: 1 DPNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPD 180
+P ASRP+D DR GFV+ +GAG+++LE HA RG + AE+VGFG +GD Y + +P
Sbjct: 215 EPQKASRPWDKDRDGFVLGDGAGIMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPS 274
Query: 181 NSGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLFG----KYPLVS 348
G G AM+AA+ A V +QI Y+NAH TSTP GD E K I+ G K LVS
Sbjct: 275 EDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVLVS 334
Query: 349 SFKGQLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNN 528
S K GH LG +G+VEA +T+ +++ ++PP NL+ P+ + V LV + +
Sbjct: 335 STKSMTGHLLGAAGSVEAIITVMSLVDQMVPPTINLDNPEEGLGVDLVPHVARKV---ES 391
Query: 529 PKLVVKNSFGFGGTNCSVVMK 591
+ + NSFGFGGTN S++ K
Sbjct: 392 MEYAMCNSFGFGGTNGSLIFK 412
>sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP
synthase II) (KAS II)
Length = 415
Score = 172 bits (436), Expect = 8e-43
Identities = 86/205 (41%), Positives = 124/205 (60%), Gaps = 4/205 (1%)
Frame = +1
Query: 1 DPNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPD 180
+P ASRP+D R GFV+ +GAGV++LE HA RG + AE+VGFG +GD Y + +P
Sbjct: 215 EPQKASRPWDKGRDGFVLGDGAGVMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPS 274
Query: 181 NSGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLFG----KYPLVS 348
G G AM+AA+ A + Q+ Y+NAH TSTP GD E K ++ G K LVS
Sbjct: 275 EDGSGGALAMEAAMRDANITGTQVGYVNAHGTSTPAGDVAEIKGVKRALGEEGSKQVLVS 334
Query: 349 SFKGQLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNN 528
S K GH LG +G+VEA +T+ +++ ++PP NL+ P+ +++ LV + +
Sbjct: 335 STKSMTGHLLGAAGSVEAIITVLSLVDQIVPPTINLDDPEEGLDIDLVPHTARKV----D 390
Query: 529 PKLVVKNSFGFGGTNCSVVMKEFIE 603
+ + NSFGFGGTN S+V K+ E
Sbjct: 391 MEYAICNSFGFGGTNGSLVFKKIAE 415
>sp|P73283|FABF_SYNY3 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP
synthase II) (KAS II)
Length = 416
Score = 170 bits (430), Expect = 4e-42
Identities = 89/202 (44%), Positives = 121/202 (59%), Gaps = 3/202 (1%)
Frame = +1
Query: 1 DPNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPD 180
DP ASRPFD DR GFVM EG+G+LILE L A RG + E+VG+ T D Y + AP
Sbjct: 218 DPLHASRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPV 277
Query: 181 NSGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLFGKYP---LVSS 351
G GA RA+ A++ + ++P+ +SYINAH TSTP D E +AI+ G + VSS
Sbjct: 278 PDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSS 337
Query: 352 FKGQLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNNP 531
K GH LGGSG +EA T+ I E +PP NL PDP ++ V G + ++ +
Sbjct: 338 TKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVPGQSRALIVD--- 394
Query: 532 KLVVKNSFGFGGTNCSVVMKEF 597
+ + NSFGFGG N ++ K++
Sbjct: 395 -VALSNSFGFGGHNVTLAFKKY 415
>sp|P0AAI5|FABF_ECOLI 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP
synthase II) (KAS II)
sp|P0AAI8|FABF_SHIFL 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP
synthase II) (KAS II)
sp|P0AAI6|FABF_ECOL6 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP
synthase II) (KAS II)
sp|P0AAI7|FABF_ECO57 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP
synthase II) (KAS II)
Length = 413
Score = 166 bits (420), Expect = 6e-41
Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 3/201 (1%)
Frame = +1
Query: 1 DPNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPD 180
+P +ASRP+D +R GFV+ +GAG+L+LE HA KRG + AE+VGFG + D Y + +P
Sbjct: 215 NPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPP 274
Query: 181 NSGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLFGKYP---LVSS 351
+G GA AM A+ A +E QI Y+NAH TSTP GD E +A++ +FG+ LVSS
Sbjct: 275 ENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSS 334
Query: 352 FKGQLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNNP 531
K GH LG +GAVE+ +I + + +PP NL+ PD ++ V + +
Sbjct: 335 TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQV---SGM 391
Query: 532 KLVVKNSFGFGGTNCSVVMKE 594
+ + NSFGFGGTN S++ K+
Sbjct: 392 EYTLCNSFGFGGTNGSLIFKK 412
>sp|P56902|FABF_RHIME 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP
synthase II) (KAS II)
Length = 421
Score = 164 bits (416), Expect = 2e-40
Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)
Frame = +1
Query: 1 DPNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPD 180
+P ASRP+D DR GFVM EGAG+++LE L HA RG + AE++G+G +GD + + AP
Sbjct: 222 NPEKASRPYDADRDGFVMGEGAGIVVLEELEHARARGAKIYAEVIGYGLSGDAFHITAPS 281
Query: 181 NSGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLFGKYP---LVSS 351
G+GAYR M+ A++ A V I YINAH TST D +E A+E L G +SS
Sbjct: 282 EDGEGAYRCMQMALKRAGVTAADIDYINAHGTST-MADTIELGAVERLVGDSASRISMSS 340
Query: 352 FKGQLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNNP 531
K +GH LG +GAVEA + I + + PP NL+ P + LV +
Sbjct: 341 TKSAIGHLLGAAGAVEAIFSALAIRDNIAPPTLNLDNPSVETKIDLV----PHVARKREI 396
Query: 532 KLVVKNSFGFGGTNCSVVMKEF 597
+ + NSFGFGGTN S++++ +
Sbjct: 397 NVALSNSFGFGGTNASLILRRY 418
>sp|Q8L3X9|KASM_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial precursor
(Beta-ketoacyl-ACP synthase) (mtKAS)
Length = 461
Score = 162 bits (409), Expect = 1e-39
Identities = 85/201 (42%), Positives = 119/201 (59%), Gaps = 7/201 (3%)
Frame = +1
Query: 4 PNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPDN 183
P ASRPFD DR GFV+ EG+GV++LE HA +RG + AE+ G+G +GD + + P
Sbjct: 262 PQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPE 321
Query: 184 SGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLFGKYP-----LVS 348
G GA AM A+ + + P QI Y+NAHATSTP GD +E +AI+ +F ++ S
Sbjct: 322 DGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFS 381
Query: 349 SFKGQLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNN 528
S KG GH LG +GAVEA +I I G+ P N+ PDP+ + + P+ +
Sbjct: 382 STKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFM-----PLTTSKK 436
Query: 529 --PKLVVKNSFGFGGTNCSVV 585
+ + NSFGFGGTN S++
Sbjct: 437 MLVRTAMSNSFGFGGTNASLL 457
>sp|P63457|FAB2_MYCBO 3-oxoacyl-[acyl-carrier-protein] synthase 2 (Beta-ketoacyl-ACP
synthase 2) (KAS 2)
sp|P63456|FAB2_MYCTU 3-oxoacyl-[acyl-carrier-protein] synthase 2 (Beta-ketoacyl-ACP
synthase 2) (KAS 2)
Length = 417
Score = 153 bits (387), Expect = 4e-37
Identities = 84/200 (42%), Positives = 117/200 (58%), Gaps = 1/200 (0%)
Frame = +1
Query: 1 DPNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPD 180
DP A RPFD DR GFV EG +L++E+ HA RG LA I+G T DG+ +VAPD
Sbjct: 222 DPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPD 281
Query: 181 NSGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEH-LFGKYPLVSSFK 357
+G+ A A+ AI+ A + P I ++NAHAT T GD E +AI + L G P V + K
Sbjct: 282 PNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRPAVYAPK 341
Query: 358 GQLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNNPKL 537
LGH +G GAVE+ +T+ + + +IPP NL DP I++ +V+G P N +
Sbjct: 342 SALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEPRP----GNYRY 397
Query: 538 VVKNSFGFGGTNCSVVMKEF 597
+ NSFGFGG N ++ +
Sbjct: 398 AINNSFGFGGHNVAIAFGRY 417
>sp|P39525|CEM1_YEAST 3-oxoacyl-[acyl-carrier-protein] synthase homolog
(Beta-ketoacyl-ACP synthase homolog)
Length = 442
Score = 152 bits (383), Expect = 1e-36
Identities = 85/206 (41%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Frame = +1
Query: 7 NSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPDNS 186
N SRPFD RSGFV+ EG G++++ESL HA KR ++E+VG+G + D + +P
Sbjct: 235 NGISRPFDTQRSGFVLGEGCGMIVMESLEHAQKRNANIISELVGYGLSSDACHITSPPAD 294
Query: 187 GDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLF------GKYPLVS 348
G+GA RA++ A++ A++EP + Y+NAHATST GD EC A+ K +S
Sbjct: 295 GNGAKRAIEMALKMARLEPTDVDYVNAHATSTLLGDKAECLAVASALLPGRSKSKPLYIS 354
Query: 349 SFKGQLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMIN---VSLVSGGNSPIVW 519
S KG +GH LG +GAVE+ TI + + +P NL+ + N L + PIV
Sbjct: 355 SNKGAIGHLLGAAGAVESIFTICSLKDDKMPHTLNLDNVLTLENNEADKLHFIRDKPIV- 413
Query: 520 NNNPKLVVKNSFGFGGTNCSVVMKEF 597
NPK + NSFGFGG N S++ K++
Sbjct: 414 GANPKYALCNSFGFGGVNTSLLFKKW 439
>sp|P63455|FAB1_MYCBO 3-oxoacyl-[acyl-carrier-protein] synthase 1 (Beta-ketoacyl-ACP
synthase 1) (KAS 1)
sp|P63454|FAB1_MYCTU 3-oxoacyl-[acyl-carrier-protein] synthase 1 (Beta-ketoacyl-ACP
synthase 1) (KAS 1)
Length = 416
Score = 148 bits (373), Expect = 2e-35
Identities = 78/199 (39%), Positives = 113/199 (56%)
Frame = +1
Query: 1 DPNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPD 180
+P ASRPFD DR GFV E ++++E+ HA RG +PLA ++G G T D + +VAP
Sbjct: 222 EPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPA 281
Query: 181 NSGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLFGKYPLVSSFKG 360
G A RAM ++E A + P I ++NAH T+TP GD E AI V + K
Sbjct: 282 ADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQAAVYAPKS 341
Query: 361 QLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNNPKLV 540
LGH +G GA+E+ +T+ + +G+IPP N PDP I++ +V+G + +
Sbjct: 342 ALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEPR----YGDYRYA 397
Query: 541 VKNSFGFGGTNCSVVMKEF 597
V NSFGFGG N ++ +
Sbjct: 398 VNNSFGFGGHNVALAFGRY 416
>sp|P43710|FABB_HAEIN 3-oxoacyl-[acyl-carrier-protein] synthase I (Beta-ketoacyl-ACP
synthase I) (KAS I)
Length = 406
Score = 147 bits (372), Expect = 2e-35
Identities = 88/201 (43%), Positives = 114/201 (56%), Gaps = 3/201 (1%)
Frame = +1
Query: 4 PNSASRPFDIDRSGFVMAEGAGVLILESLSHANKRGKQPLAEIVGFGQTGDGYSLVAPDN 183
P ASR +D +R GFV+A G V+++E L HA RG + AEIVG+G T DGY +VAP
Sbjct: 214 PEKASRAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP-- 271
Query: 184 SGDGAYRAMKAAIESAKVEPQQISYINAHATSTPQGDYLECKAIEHLFG-KYPLVSSFKG 360
SG+GA R MK A+ + I YIN H TSTP GD E AI+++FG K P +SS K
Sbjct: 272 SGEGAERCMKQAMATVDT---PIDYINVHGTSTPVGDVKELGAIKNVFGDKIPAISSTKS 328
Query: 361 QLGHCLGGSGAVEAAMTIKCIIEGLIPPNCNLNQPDPMINVSLVSGGNSPIVWNNNPKL- 537
GH LG +GA EA T+ + I P+ N+ D G N N L
Sbjct: 329 MTGHSLGAAGAHEAIYTLLMLDNDFIAPSINIETLD-----EAAEGCNIVTETKENAGLQ 383
Query: 538 -VVKNSFGFGGTNCSVVMKEF 597
V+ NSFGFGGTN +++ K +
Sbjct: 384 TVMSNSFGFGGTNATLIFKRY 404
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,347,510
Number of Sequences: 369166
Number of extensions: 1759732
Number of successful extensions: 5571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5201
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)