Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01840
(926 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8IZ69|HTF9C_HUMAN HpaII tiny fragments locus 9c protein 177 3e-44
sp|Q8BNV1|HTF9C_MOUSE HpaII tiny fragments locus 9c protein 122 1e-27
sp|Q92AV4|YI15_LISIN Hypothetical RNA methyltransferase lin... 106 8e-23
sp|Q71YW4|YH27_LISMF Hypothetical RNA methyltransferase LMO... 106 1e-22
sp|Q8Y6I1|YH03_LISMO Hypothetical RNA methyltransferase lmo... 105 2e-22
sp|Q8R933|YH97_THETN Hypothetical RNA methyltransferase TTE... 105 2e-22
sp|Q892Z2|YJ41_CLOTE Hypothetical RNA methyltransferase CTC... 101 3e-21
sp|Q8ES75|Y768_OCEIH Hypothetical RNA methyltransferase OB0768 100 1e-20
sp|Q8KGF9|Y009_CHLTE Hypothetical RNA methyltransferase CT0009 100 1e-20
sp|Q8XIK5|Y2114_CLOPE Hypothetical RNA methyltransferase CP... 98 4e-20
>sp|Q8IZ69|HTF9C_HUMAN HpaII tiny fragments locus 9c protein
Length = 625
Score = 177 bits (450), Expect = 3e-44
Identities = 107/287 (37%), Positives = 147/287 (51%), Gaps = 1/287 (0%)
Frame = +2
Query: 62 SVFTPGTDQGHLRGITLRTGSINLDKQPIADDTNTDEIESHSLLMIIDIHPQQLXXXXXX 241
S + P T GH + +T+RT H + I HPQ+L
Sbjct: 302 SAYDPETYTGHWKQLTVRTS------------------RRHQAMAIAYFHPQKLSPEELA 343
Query: 242 XXXXFFLDYFKNGKGIECGITSLLLTTRRNNSDPLDLSTT-KIISGSGFVYEKLMNLNFR 418
+F G G G+T L P + ++G ++E L+ L FR
Sbjct: 344 ELKTSLAQHFTAGPGRASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFR 403
Query: 419 ISFNAFFQVNTMAANTLYSTIRQLLLKEVIDIDNKKNITLLDVCCGTGTIGLAMADLVDN 598
IS +AFFQVNT AA LY+ I+ + + +LDVCCGTGTIGLA+A V
Sbjct: 404 ISPHAFFQVNTPAAEVLYTVIQDWAQLDAGSM-------VLDVCCGTGTIGLALARKVKR 456
Query: 599 VVGVEMCAESVEDANYNKNLNKITNTHFHVGKAEDLMANLLMTEEKSHDKANREFVAIVD 778
V+GVE+C E+VEDA N N+++N FH G+AEDL+ L+ A++ VAI+D
Sbjct: 457 VIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLVSR------LASQHLVAILD 510
Query: 779 PPRAGLHINVIQALRRCDLIKNVIFVSCNPEAAYNNFIDFARPISKR 919
PPRAGLH VI A+RR ++ +++VSCNP AA NF+D R S R
Sbjct: 511 PPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAMGNFVDLCRAPSNR 557
>sp|Q8BNV1|HTF9C_MOUSE HpaII tiny fragments locus 9c protein
Length = 574
Score = 122 bits (307), Expect = 1e-27
Identities = 92/287 (32%), Positives = 124/287 (43%), Gaps = 1/287 (0%)
Frame = +2
Query: 62 SVFTPGTDQGHLRGITLRTGSINLDKQPIADDTNTDEIESHSLLMIIDIHPQQLXXXXXX 241
S + P T GH + +T+RT S + I HPQ+L
Sbjct: 292 SAYDPETYTGHWKQLTVRTSSRG------------------QAMAIAYFHPQKLSSEEVA 333
Query: 242 XXXXFFLDYFKNGKGIECGITSLLLTTRRNNSDPLDLSTT-KIISGSGFVYEKLMNLNFR 418
+ +F G G G+TSL P + ++G + E L+ L FR
Sbjct: 334 GLKASLVCHFMEGPGKASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFR 393
Query: 419 ISFNAFFQVNTMAANTLYSTIRQLLLKEVIDIDNKKNITLLDVCCGTGTIGLAMADLVDN 598
IS +AFFQVNT AA LY+ I+ E +D T+LDVCCGTGTIGLA+A V
Sbjct: 394 ISPHAFFQVNTPAAEVLYTVIQ-----EWAQLDGGS--TVLDVCCGTGTIGLALAPKVKR 446
Query: 599 VVGVEMCAESVEDANYNKNLNKITNTHFHVGKAEDLMANLLMTEEKSHDKANREFVAIVD 778
VVG+E+C E+VEDA +N +TN
Sbjct: 447 VVGIELCQEAVEDA----RMNALTNDS--------------------------------- 469
Query: 779 PPRAGLHINVIQALRRCDLIKNVIFVSCNPEAAYNNFIDFARPISKR 919
VI A+R+ + IK +++VSCNP AA NF+D R S R
Sbjct: 470 --------KVILAIRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNR 508
>sp|Q92AV4|YI15_LISIN Hypothetical RNA methyltransferase lin1815
Length = 457
Score = 106 bits (265), Expect = 8e-23
Identities = 66/190 (34%), Positives = 100/190 (52%)
Frame = +2
Query: 299 ITSLLLTTRRNNSDPLDLSTTKIISGSGFVYEKLMNLNFRISFNAFFQVNTMAANTLYST 478
+TS++ + S + T +++G + EKLM L F +S AFFQ+N LY
Sbjct: 243 VTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQE 302
Query: 479 IRQLLLKEVIDIDNKKNITLLDVCCGTGTIGLAMADLVDNVVGVEMCAESVEDANYNKNL 658
+ + L+ + TL+D CG GTIG A A V V G+++ ES+EDA N
Sbjct: 303 VEKALVLTGSE-------TLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEK 355
Query: 659 NKITNTHFHVGKAEDLMANLLMTEEKSHDKANREFVAIVDPPRAGLHINVIQALRRCDLI 838
N I N ++ VGKAED++ K + R IVDPPR+G +I++L + +
Sbjct: 356 NGIDNVYYEVGKAEDVL-------PKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLQVE-A 407
Query: 839 KNVIFVSCNP 868
K +++VSCNP
Sbjct: 408 KQLVYVSCNP 417
>sp|Q71YW4|YH27_LISMF Hypothetical RNA methyltransferase LMOf2365_1727
Length = 459
Score = 106 bits (264), Expect = 1e-22
Identities = 66/190 (34%), Positives = 100/190 (52%)
Frame = +2
Query: 299 ITSLLLTTRRNNSDPLDLSTTKIISGSGFVYEKLMNLNFRISFNAFFQVNTMAANTLYST 478
+TS++ + S + T +++G + EKLM L F +S AFFQ+N LY
Sbjct: 243 VTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQE 302
Query: 479 IRQLLLKEVIDIDNKKNITLLDVCCGTGTIGLAMADLVDNVVGVEMCAESVEDANYNKNL 658
+ + L+ + TL+D CG GTIG A A V V G+++ ES+EDA N
Sbjct: 303 VEKALVLTGSE-------TLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEK 355
Query: 659 NKITNTHFHVGKAEDLMANLLMTEEKSHDKANREFVAIVDPPRAGLHINVIQALRRCDLI 838
N I N ++ VGKAED++ K ++ R IVDPPR+G +I++L +
Sbjct: 356 NGIENVYYEVGKAEDVL-------PKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVE-A 407
Query: 839 KNVIFVSCNP 868
K +++VSCNP
Sbjct: 408 KQLVYVSCNP 417
>sp|Q8Y6I1|YH03_LISMO Hypothetical RNA methyltransferase lmo1703
Length = 459
Score = 105 bits (262), Expect = 2e-22
Identities = 66/190 (34%), Positives = 99/190 (52%)
Frame = +2
Query: 299 ITSLLLTTRRNNSDPLDLSTTKIISGSGFVYEKLMNLNFRISFNAFFQVNTMAANTLYST 478
+TS++ + S + T +++G + EKLM L F +S AFFQ+N LY
Sbjct: 243 VTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQE 302
Query: 479 IRQLLLKEVIDIDNKKNITLLDVCCGTGTIGLAMADLVDNVVGVEMCAESVEDANYNKNL 658
+ + L+ + TL+D CG GTIG A A V V G+++ ES+EDA N
Sbjct: 303 VEKALVLTGSE-------TLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEK 355
Query: 659 NKITNTHFHVGKAEDLMANLLMTEEKSHDKANREFVAIVDPPRAGLHINVIQALRRCDLI 838
N I N ++ VGKAED++ K + R IVDPPR+G +I++L +
Sbjct: 356 NGIENVYYEVGKAEDVL-------PKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLDVE-A 407
Query: 839 KNVIFVSCNP 868
K +++VSCNP
Sbjct: 408 KQLVYVSCNP 417
>sp|Q8R933|YH97_THETN Hypothetical RNA methyltransferase TTE1797
Length = 450
Score = 105 bits (261), Expect = 2e-22
Identities = 65/192 (33%), Positives = 105/192 (54%)
Frame = +2
Query: 299 ITSLLLTTRRNNSDPLDLSTTKIISGSGFVYEKLMNLNFRISFNAFFQVNTMAANTLYST 478
+ +L T + SD + +++ G ++ E+L+ L F+IS +FFQ N+ A +YST
Sbjct: 238 LVGVLHTYNDSWSDAVICEKLEVLYGRDYLIEELLGLKFKISAFSFFQTNSYGAERIYST 297
Query: 479 IRQLLLKEVIDIDNKKNITLLDVCCGTGTIGLAMADLVDNVVGVEMCAESVEDANYNKNL 658
+R+ D+ NK T+ D+ CGTGTIG+ MA L V+G+E+ E+V A N L
Sbjct: 298 VREF----AGDVSNK---TIFDLYCGTGTIGIVMAPLARKVIGIELVEEAVFSAKENAAL 350
Query: 659 NKITNTHFHVGKAEDLMANLLMTEEKSHDKANREFVAIVDPPRAGLHINVIQALRRCDLI 838
N + N F G D+ L +EK + +VDPPR+G++ ++ + +
Sbjct: 351 NGLENAVFIAG---DVSKKLREIKEKPD-------IVVVDPPRSGVNPKALEDIVNFEPE 400
Query: 839 KNVIFVSCNPEA 874
K +I+VSCNPE+
Sbjct: 401 K-IIYVSCNPES 411
>sp|Q892Z2|YJ41_CLOTE Hypothetical RNA methyltransferase CTC01941
Length = 456
Score = 101 bits (251), Expect = 3e-21
Identities = 61/191 (31%), Positives = 98/191 (51%)
Frame = +2
Query: 299 ITSLLLTTRRNNSDPLDLSTTKIISGSGFVYEKLMNLNFRISFNAFFQVNTMAANTLYST 478
+ +L T + SD + I+ G ++ E L+ L F+I+ +FFQ N+ A LYS
Sbjct: 241 LVGILHTINDSLSDVVQCDKLNILYGRDYIIEDLLGLKFKITPLSFFQTNSKGAEKLYSI 300
Query: 479 IRQLLLKEVIDIDNKKNITLLDVCCGTGTIGLAMADLVDNVVGVEMCAESVEDANYNKNL 658
+R I K+ T+ D+ CGTGTIG +A V+G+E+ E+VE A N L
Sbjct: 301 VRDF-------IGESKSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKL 353
Query: 659 NKITNTHFHVGKAEDLMANLLMTEEKSHDKANREFVAIVDPPRAGLHINVIQALRRCDLI 838
N + N F G +A ++ ++ D V I+DPPR G+H ++ + + D
Sbjct: 354 NNLNNCEFIAGD----IAQVIKEVKQKPD------VIILDPPRPGVHPKALEYVIKFD-S 402
Query: 839 KNVIFVSCNPE 871
+++VSCNP+
Sbjct: 403 PTIVYVSCNPK 413
>sp|Q8ES75|Y768_OCEIH Hypothetical RNA methyltransferase OB0768
Length = 459
Score = 99.8 bits (247), Expect = 1e-20
Identities = 58/170 (34%), Positives = 92/170 (54%)
Frame = +2
Query: 359 TKIISGSGFVYEKLMNLNFRISFNAFFQVNTMAANTLYSTIRQLLLKEVIDIDNKKNITL 538
TK++ G ++Y+K+ +L F IS +FFQVN + LY E +ID K+ +
Sbjct: 261 TKVLWGENYIYDKIGDLTFAISPKSFFQVNPVQTKVLYDKAL-----EYANID--KDDVV 313
Query: 539 LDVCCGTGTIGLAMADLVDNVVGVEMCAESVEDANYNKNLNKITNTHFHVGKAEDLMANL 718
+D CG G+I L +A V G+E+ E++EDA N +N + N F VG+AE +M
Sbjct: 314 IDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVM--- 370
Query: 719 LMTEEKSHDKANREFVAIVDPPRAGLHINVIQALRRCDLIKNVIFVSCNP 868
K ++ V +VDPPR G ++ ++A+ K +++VSCNP
Sbjct: 371 ----PKWKEQGLDPDVIVVDPPRKGCDVDFLEAMIAMK-PKRIVYVSCNP 415
>sp|Q8KGF9|Y009_CHLTE Hypothetical RNA methyltransferase CT0009
Length = 483
Score = 99.8 bits (247), Expect = 1e-20
Identities = 58/169 (34%), Positives = 95/169 (56%)
Frame = +2
Query: 365 IISGSGFVYEKLMNLNFRISFNAFFQVNTMAANTLYSTIRQLLLKEVIDIDNKKNITLLD 544
+ISG G+V E+L +L+FRIS N+FFQ NT A TLY I + + + D T+ D
Sbjct: 287 VISGDGYVTERLGDLDFRISANSFFQTNTRQAETLYDQI--IAVGGITPED-----TVYD 339
Query: 545 VCCGTGTIGLAMADLVDNVVGVEMCAESVEDANYNKNLNKITNTHFHVGKAEDLMANLLM 724
+ CGTGTI L +A +G+E+ +V+DA N LN ++NT F ++ A
Sbjct: 340 LYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTVFFQADLKNFHA---- 395
Query: 725 TEEKSHDKANREFVAIVDPPRAGLHINVIQALRRCDLIKNVIFVSCNPE 871
+++ + + + + DPPRAG+H + + + + +++VSCNP+
Sbjct: 396 -MQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQ-PERIVYVSCNPD 442
>sp|Q8XIK5|Y2114_CLOPE Hypothetical RNA methyltransferase CPE2114
Length = 451
Score = 97.8 bits (242), Expect = 4e-20
Identities = 63/198 (31%), Positives = 102/198 (51%)
Frame = +2
Query: 278 GKGIECGITSLLLTTRRNNSDPLDLSTTKIISGSGFVYEKLMNLNFRISFNAFFQVNTMA 457
G ++ + S++ T S+ + I+ G F+ E L+ LNF+IS +FFQ N++
Sbjct: 232 GLNLKGKLKSIIHTESDALSEAVIPEKVNILYGDDFITENLLGLNFKISPFSFFQTNSLG 291
Query: 458 ANTLYSTIRQLLLKEVIDIDNKKNITLLDVCCGTGTIGLAMADLVDNVVGVEMCAESVED 637
A LYS +R + DNK + D+ CGTGTIG A V+G+E+ E+
Sbjct: 292 AEKLYSIVRDFMGAA----DNK---VVFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMA 344
Query: 638 ANYNKNLNKITNTHFHVGKAEDLMANLLMTEEKSHDKANREFVAIVDPPRAGLHINVIQA 817
AN N LN + N +F G +A ++ T + D + I+DPPR+G+H +
Sbjct: 345 ANENAKLNGLNNCNFIAGD----VAEVIKTVKDKPD------IIILDPPRSGVHPKALDY 394
Query: 818 LRRCDLIKNVIFVSCNPE 871
+ + + +I+VSCNP+
Sbjct: 395 VIKFN-APQIIYVSCNPK 411
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,617,098
Number of Sequences: 369166
Number of extensions: 1832429
Number of successful extensions: 5347
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5129
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)