Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01839
(444 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 ... 107 9e-24
sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B (Microtubu... 87 2e-17
sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B (Microtubu... 86 4e-17
sp|P46867|KLP68_DROME Kinesin-like protein KLP68D 50 3e-06
sp|O35066|KIF3C_MOUSE Kinesin-like protein KIF3C 43 3e-04
sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C 43 3e-04
sp|O14782|KIF3C_HUMAN Kinesin-like protein KIF3C 43 4e-04
sp|Q88U22|PUR7_LACPL Phosphoribosylaminoimidazole-succinoca... 29 4.0
sp|Q8VHQ2|SOCS7_MOUSE Suppressor of cytokine signaling 7 (S... 28 6.9
sp|P57059|SN1L1_HUMAN Serine/threonine-protein kinase SNF1-... 28 6.9
>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 95 kDa subunit)
Length = 742
Score = 107 bits (268), Expect = 9e-24
Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Frame = +3
Query: 3 SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALET 182
SA+G RRPI+ ++R+A++ G +PR+K+EN+L VDLDMP+RTTRDYE PS+AP++ AAL+
Sbjct: 629 SAVGNRRPIADYARMAAQMGGNPRYKAENILSVDLDMPNRTTRDYEGPSVAPRVQAALDA 688
Query: 183 ALQDEGDIELDGSPSVFKSSPNL--XXXXXXXXXXXXXXDVAQEFPTSRGLVTK 338
ALQDE D++L+ P VFK+ L +Q +P +RGL+ K
Sbjct: 689 ALQDEDDLDLEVQPEVFKAKTKLKKDKVRSKHKAVAKPGSNSQLYPQARGLIQK 742
>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin
motor 3B)
Length = 747
Score = 86.7 bits (213), Expect = 2e-17
Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
Frame = +3
Query: 3 SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALET 182
SA+G +RP+S+ +R++ PR+++EN+++++LDMPSRTTRDYE P+++P++ AAL+
Sbjct: 631 SAVGYKRPLSQHARMSMMIRPEPRYRAENIMLLELDMPSRTTRDYEGPAISPKVQAALDA 690
Query: 183 ALQDEGDIELDGS--PSVFKSSPNLXXXXXXXXXXXXXXD---VAQEFPTSRGLVTK 338
ALQDE +I++D S S P +Q +P SRGLV K
Sbjct: 691 ALQDEDEIQVDASSFESTASRKPKARPKSGRKSGSSSSSSGNPASQFYPQSRGLVPK 747
>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin
motor 3B) (HH0048)
Length = 747
Score = 85.9 bits (211), Expect = 4e-17
Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 7/119 (5%)
Frame = +3
Query: 3 SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALET 182
SA+G +RP+S+ +R++ R+++EN+++++LDMPSRTTRDYE P++AP++ AAL+
Sbjct: 631 SAVGYKRPLSQHARMSMMIRPEARYRAENIVLLELDMPSRTTRDYEGPAIAPKVQAALDA 690
Query: 183 ALQDEGDIELDGSPSVFKSSPNLXXXXXXXXXXXXXXD-------VAQEFPTSRGLVTK 338
ALQDE +I++D S F+S+ N +Q +P SRGLV K
Sbjct: 691 ALQDEDEIQVDASS--FESTANKKSKARPKSGRKSGSSSSSSGTPASQLYPQSRGLVPK 747
>sp|P46867|KLP68_DROME Kinesin-like protein KLP68D
Length = 784
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 18 RRPISRFSRLASKTGH--SPRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALETALQ 191
RRP S ++ +K+ S R KSEN++ +L+MP RTT++Y P ++ L A L A+Q
Sbjct: 633 RRPTSEYALQEAKSNSPSSLRFKSENIVNYELEMPCRTTQEYRTPKVSASLQAVLAQAMQ 692
Query: 192 DEGD 203
GD
Sbjct: 693 TGGD 696
>sp|O35066|KIF3C_MOUSE Kinesin-like protein KIF3C
Length = 796
Score = 43.1 bits (100), Expect = 3e-04
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDM--PSRTTRDYEPPSMAPQLVAAL 176
SA+G +RPIS+++R+A G PR+++EN++ ++LD+ P+ ++ V +
Sbjct: 682 SAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDVSPPAIFEMEFSHDQEQDPRVLHM 741
Query: 177 ETALQDEGDIELDGSPSVFKS 239
E ++ + +E + V KS
Sbjct: 742 ERLMRLDSFLERPSTTKVRKS 762
>sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C
Length = 796
Score = 43.1 bits (100), Expect = 3e-04
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +3
Query: 3 SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDM--PSRTTRDYEPPSMAPQLVAAL 176
SA+G +RPIS+++R+A G PR+++EN++ ++LD+ P+ ++ V +
Sbjct: 682 SAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDVSPPAIFEMEFSHDQEQDPRVLHM 741
Query: 177 ETALQDEGDIELDGSPSVFKS 239
E ++ + +E + V KS
Sbjct: 742 ERLMRLDSFLERPSTSKVRKS 762
>sp|O14782|KIF3C_HUMAN Kinesin-like protein KIF3C
Length = 793
Score = 42.7 bits (99), Expect = 4e-04
Identities = 16/37 (43%), Positives = 30/37 (81%)
Frame = +3
Query: 3 SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDM 113
SA+G +RPIS+++R+A G PR+++EN++ ++LD+
Sbjct: 680 SAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDV 716
>sp|Q88U22|PUR7_LACPL Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
Length = 243
Score = 29.3 bits (64), Expect = 4.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 310 NS*ATSFLAVLGLFSFFFALRFGLDLNTEGLPSNSISPSSCKAV 179
N T+ A +G+ F + FGL + L ++ ISP SC+ V
Sbjct: 163 NQRLTAIFAAMGVQLVDFKIEFGLTTTGKVLLADEISPDSCRLV 206
>sp|Q8VHQ2|SOCS7_MOUSE Suppressor of cytokine signaling 7 (SOCS-7)
Length = 579
Score = 28.5 bits (62), Expect = 6.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 15 GRRP-ISRFSRLASKTGHSPRHKSENVLMVDLDMPSRTTRDYEPPSMAP 158
GR+P ++R S SP E V +VD+D+ R PP+ P
Sbjct: 260 GRKPRLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPP 308
>sp|P57059|SN1L1_HUMAN Serine/threonine-protein kinase SNF1-like kinase 1
(Serine/threonine-protein kinase SNF1LK)
Length = 783
Score = 28.5 bits (62), Expect = 6.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 69 PRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALETALQDEGDIELDGS 221
PR +S ++ +++ +T + P + PQ +++ LQ E D EL S
Sbjct: 362 PRPRSSDLSGLEVPQEGLSTDPFRPALLCPQPQTLVQSVLQAEMDCELQSS 412
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,143,030
Number of Sequences: 369166
Number of extensions: 799693
Number of successful extensions: 1906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1906
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)