Planaria EST Database


DrC_01839

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01839
         (444 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46871|KRP95_STRPU  Kinesin-II 95 kDa subunit (KRP-85/95 ...   107   9e-24
sp|Q61771|KIF3B_MOUSE  Kinesin-like protein KIF3B (Microtubu...    87   2e-17
sp|O15066|KIF3B_HUMAN  Kinesin-like protein KIF3B (Microtubu...    86   4e-17
sp|P46867|KLP68_DROME  Kinesin-like protein KLP68D                 50   3e-06
sp|O35066|KIF3C_MOUSE  Kinesin-like protein KIF3C                  43   3e-04
sp|O55165|KIF3C_RAT  Kinesin-like protein KIF3C                    43   3e-04
sp|O14782|KIF3C_HUMAN  Kinesin-like protein KIF3C                  43   4e-04
sp|Q88U22|PUR7_LACPL  Phosphoribosylaminoimidazole-succinoca...    29   4.0  
sp|Q8VHQ2|SOCS7_MOUSE  Suppressor of cytokine signaling 7 (S...    28   6.9  
sp|P57059|SN1L1_HUMAN  Serine/threonine-protein kinase SNF1-...    28   6.9  
>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 95 kDa subunit)
          Length = 742

 Score =  107 bits (268), Expect = 9e-24
 Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
 Frame = +3

Query: 3   SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALET 182
           SA+G RRPI+ ++R+A++ G +PR+K+EN+L VDLDMP+RTTRDYE PS+AP++ AAL+ 
Sbjct: 629 SAVGNRRPIADYARMAAQMGGNPRYKAENILSVDLDMPNRTTRDYEGPSVAPRVQAALDA 688

Query: 183 ALQDEGDIELDGSPSVFKSSPNL--XXXXXXXXXXXXXXDVAQEFPTSRGLVTK 338
           ALQDE D++L+  P VFK+   L                  +Q +P +RGL+ K
Sbjct: 689 ALQDEDDLDLEVQPEVFKAKTKLKKDKVRSKHKAVAKPGSNSQLYPQARGLIQK 742
>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin
           motor 3B)
          Length = 747

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
 Frame = +3

Query: 3   SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALET 182
           SA+G +RP+S+ +R++      PR+++EN+++++LDMPSRTTRDYE P+++P++ AAL+ 
Sbjct: 631 SAVGYKRPLSQHARMSMMIRPEPRYRAENIMLLELDMPSRTTRDYEGPAISPKVQAALDA 690

Query: 183 ALQDEGDIELDGS--PSVFKSSPNLXXXXXXXXXXXXXXD---VAQEFPTSRGLVTK 338
           ALQDE +I++D S   S     P                     +Q +P SRGLV K
Sbjct: 691 ALQDEDEIQVDASSFESTASRKPKARPKSGRKSGSSSSSSGNPASQFYPQSRGLVPK 747
>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin
           motor 3B) (HH0048)
          Length = 747

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 7/119 (5%)
 Frame = +3

Query: 3   SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALET 182
           SA+G +RP+S+ +R++       R+++EN+++++LDMPSRTTRDYE P++AP++ AAL+ 
Sbjct: 631 SAVGYKRPLSQHARMSMMIRPEARYRAENIVLLELDMPSRTTRDYEGPAIAPKVQAALDA 690

Query: 183 ALQDEGDIELDGSPSVFKSSPNLXXXXXXXXXXXXXXD-------VAQEFPTSRGLVTK 338
           ALQDE +I++D S   F+S+ N                        +Q +P SRGLV K
Sbjct: 691 ALQDEDEIQVDASS--FESTANKKSKARPKSGRKSGSSSSSSGTPASQLYPQSRGLVPK 747
>sp|P46867|KLP68_DROME Kinesin-like protein KLP68D
          Length = 784

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
 Frame = +3

Query: 18  RRPISRFSRLASKTGH--SPRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALETALQ 191
           RRP S ++   +K+    S R KSEN++  +L+MP RTT++Y  P ++  L A L  A+Q
Sbjct: 633 RRPTSEYALQEAKSNSPSSLRFKSENIVNYELEMPCRTTQEYRTPKVSASLQAVLAQAMQ 692

Query: 192 DEGD 203
             GD
Sbjct: 693 TGGD 696
>sp|O35066|KIF3C_MOUSE Kinesin-like protein KIF3C
          Length = 796

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +3

Query: 3   SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDM--PSRTTRDYEPPSMAPQLVAAL 176
           SA+G +RPIS+++R+A   G  PR+++EN++ ++LD+  P+    ++         V  +
Sbjct: 682 SAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDVSPPAIFEMEFSHDQEQDPRVLHM 741

Query: 177 ETALQDEGDIELDGSPSVFKS 239
           E  ++ +  +E   +  V KS
Sbjct: 742 ERLMRLDSFLERPSTTKVRKS 762
>sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C
          Length = 796

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +3

Query: 3   SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDM--PSRTTRDYEPPSMAPQLVAAL 176
           SA+G +RPIS+++R+A   G  PR+++EN++ ++LD+  P+    ++         V  +
Sbjct: 682 SAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDVSPPAIFEMEFSHDQEQDPRVLHM 741

Query: 177 ETALQDEGDIELDGSPSVFKS 239
           E  ++ +  +E   +  V KS
Sbjct: 742 ERLMRLDSFLERPSTSKVRKS 762
>sp|O14782|KIF3C_HUMAN Kinesin-like protein KIF3C
          Length = 793

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 30/37 (81%)
 Frame = +3

Query: 3   SAIGGRRPISRFSRLASKTGHSPRHKSENVLMVDLDM 113
           SA+G +RPIS+++R+A   G  PR+++EN++ ++LD+
Sbjct: 680 SAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDV 716
>sp|Q88U22|PUR7_LACPL Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
           synthetase)
          Length = 243

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 310 NS*ATSFLAVLGLFSFFFALRFGLDLNTEGLPSNSISPSSCKAV 179
           N   T+  A +G+    F + FGL    + L ++ ISP SC+ V
Sbjct: 163 NQRLTAIFAAMGVQLVDFKIEFGLTTTGKVLLADEISPDSCRLV 206
>sp|Q8VHQ2|SOCS7_MOUSE Suppressor of cytokine signaling 7 (SOCS-7)
          Length = 579

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 15  GRRP-ISRFSRLASKTGHSPRHKSENVLMVDLDMPSRTTRDYEPPSMAP 158
           GR+P ++R     S    SP    E V +VD+D+  R      PP+  P
Sbjct: 260 GRKPRLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPP 308
>sp|P57059|SN1L1_HUMAN Serine/threonine-protein kinase SNF1-like kinase 1
           (Serine/threonine-protein kinase SNF1LK)
          Length = 783

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 69  PRHKSENVLMVDLDMPSRTTRDYEPPSMAPQLVAALETALQDEGDIELDGS 221
           PR +S ++  +++     +T  + P  + PQ    +++ LQ E D EL  S
Sbjct: 362 PRPRSSDLSGLEVPQEGLSTDPFRPALLCPQPQTLVQSVLQAEMDCELQSS 412
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,143,030
Number of Sequences: 369166
Number of extensions: 799693
Number of successful extensions: 1906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1906
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)