Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01834
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7T3C7|RT4I1_BRARE Reticulon-4-interacting protein 1 hom... 123 2e-28
sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1, mi... 119 3e-27
sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1, mi... 116 2e-26
sp|Q8H0M1|QORH_SPIOL Chloroplastic quinone-oxidoreductase h... 80 2e-15
sp|Q9SV68|QORH_ARATH Putative chloroplastic quinone-oxidore... 74 2e-13
sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At... 68 1e-11
sp|Q8CRJ7|ZDH1_STAES Zinc-type alcohol dehydrogenase-like p... 67 3e-11
sp|Q6GEP3|ZDH1_STAAR Zinc-type alcohol dehydrogenase-like p... 65 1e-10
sp|Q8NVD1|ZDH1_STAAW Zinc-type alcohol dehydrogenase-like p... 64 1e-10
sp|P99173|ZDH1_STAAN Zinc-type alcohol dehydrogenase-like p... 64 1e-10
>sp|Q7T3C7|RT4I1_BRARE Reticulon-4-interacting protein 1 homolog, mitochondrial precursor
Length = 387
Score = 123 bits (309), Expect = 2e-28
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Frame = +1
Query: 7 YGDINDLRLTSSYRIPIITNPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVE- 183
YG + LR T + +PII PN V++KV AA +NPID+S+ GYGA+T + N+
Sbjct: 37 YGKNDVLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQ 96
Query: 184 ---EFPKILGRDFCGTVVKTGRSVKLFKTGMEVIGALWPFEEGSHADYVVCHESQLALKP 354
EFP ILGRD G +++ G VK FK G +V A+ P+++GS A++VV ++++ KP
Sbjct: 97 SGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIPPWKQGSLAEFVVVSGNEVSHKP 156
Query: 355 QSLKCIDAAAIPYAGLTAYSALVDFANLRTANASDKR 465
+SL+ +AA+IPY TA+SA+V+ L N++ KR
Sbjct: 157 KSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKR 193
>sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1, mitochondrial precursor
(NOGO-interacting mitochondrial protein)
Length = 396
Score = 119 bits (298), Expect = 3e-27
Identities = 67/157 (42%), Positives = 97/157 (61%), Gaps = 4/157 (2%)
Frame = +1
Query: 7 YGDINDLRLTSSYRIPIITNPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNV-- 180
YG LR T + +PII PN V++KV AASVNPID+++ SGYGA+ + +V
Sbjct: 51 YGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKI 110
Query: 181 --EEFPKILGRDFCGTVVKTGRSVKLFKTGMEVIGALWPFEEGSHADYVVCHESQLALKP 354
EEFP LGRD G V++ G VK FK G EV A+ P+++G+ +++VV ++++ KP
Sbjct: 111 KGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKP 170
Query: 355 QSLKCIDAAAIPYAGLTAYSALVDFANLRTANASDKR 465
+SL AA++PY LTA+SA+ L N + KR
Sbjct: 171 KSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKR 207
>sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1, mitochondrial precursor
(NOGO-interacting mitochondrial protein)
Length = 396
Score = 116 bits (291), Expect = 2e-26
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
Frame = +1
Query: 7 YGDINDLRLTSSYRIPIITNPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNV-- 180
YG LR T + +PII PN V+IKV AASVNPID+++ SGYGA+ + ++
Sbjct: 51 YGKNEVLRFTQNMMLPIIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNMKRDPLHMKT 110
Query: 181 --EEFPKILGRDFCGTVVKTGRSVKLFKTGMEVIGALWPFEEGSHADYVVCHESQLALKP 354
EEFP LGRD G V++ G VK F+ G EV A+ P+++G+ +++VV ++++ KP
Sbjct: 111 KGEEFPLTLGRDVSGVVMECGLDVKYFQPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKP 170
Query: 355 QSLKCIDAAAIPYAGLTAYSALVDFANLRTANASDKR 465
+SL AA++PY LTA+SA+ L N KR
Sbjct: 171 KSLTHTQAASLPYVALTAWSAINKVGGLSDKNCKGKR 207
>sp|Q8H0M1|QORH_SPIOL Chloroplastic quinone-oxidoreductase homolog (ceQORH)
Length = 329
Score = 80.1 bits (196), Expect = 2e-15
Identities = 44/132 (33%), Positives = 72/132 (54%)
Frame = +1
Query: 70 NHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVK 249
+ +L+K++AA++NPID I G + + +FP I G D G VV+ G +V
Sbjct: 34 DELLLKIEAATLNPIDWKIQKG--------VLRPLLPRKFPTIPGTDVAGEVVQAGSAVN 85
Query: 250 LFKTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVDF 429
FKTG +V+ L G+ A+Y V E+ +P + + AA+P A LTA+ AL F
Sbjct: 86 RFKTGDKVVAVLSHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQF 145
Query: 430 ANLRTANASDKR 465
AN++ + +++
Sbjct: 146 ANIKLDGSGERK 157
>sp|Q9SV68|QORH_ARATH Putative chloroplastic quinone-oxidoreductase homolog
Length = 329
Score = 73.9 bits (180), Expect = 2e-13
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
Frame = +1
Query: 46 RIPIIT-NPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGT 222
++P+ T N V +K++A S+NP+D I G + + F +FP I D G
Sbjct: 25 QVPVPTPKSNEVCLKLEATSLNPVDWKIQKG--------MIRPFLPRKFPCIPATDVAGE 76
Query: 223 VVKTGRSVKLFKTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGL 402
VV+ G VK FK G +V+ L G A++ V E +PQ + +AAA+P AGL
Sbjct: 77 VVEVGSGVKNFKAGDKVVAVLSHLGGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGL 136
Query: 403 TAYSALVDFANLRTANASDK 462
TA AL + A L+ K
Sbjct: 137 TALQALTNPAGLKLDGTGKK 156
>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740, chloroplast
precursor
Length = 386
Score = 67.8 bits (164), Expect = 1e-11
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Frame = +1
Query: 4 NYGDINDLRLTSSYRIPIITNPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVE 183
+YG ++ L+L S+ +P I + VLIKV AA++NP+D G +T +
Sbjct: 85 DYGGVDVLKLESNIVVPEIKE-DQVLIKVVAAALNPVDAKRRQGKFKATDSPL------- 136
Query: 184 EFPKILGRDFCGTVVKTGRSVKLFKTGMEVIGAL------WPFEEGSHADYVVCHESQLA 345
P + G D G VVK G +VK K G EV + P + GS A+Y E LA
Sbjct: 137 --PTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLA 194
Query: 346 LKPQSLKCIDAAAIPYAGLTAYSALV 423
LKP+++ AA +P A TA LV
Sbjct: 195 LKPKNIDFAQAAGLPLAIETADEGLV 220
>sp|Q8CRJ7|ZDH1_STAES Zinc-type alcohol dehydrogenase-like protein SE1777
Length = 336
Score = 66.6 bits (161), Expect = 3e-11
Identities = 40/131 (30%), Positives = 65/131 (49%)
Frame = +1
Query: 70 NHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVK 249
+ +L+KV + SVNP+D + V++ P++LG D G + K G V
Sbjct: 31 HELLVKVQSISVNPVDTK-------------QRTMPVDKVPRVLGFDAVGVIEKIGDQVS 77
Query: 250 LFKTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVDF 429
+F+ G V + P + GS+ +Y + E +A P +LK AA++P GLTAY L D
Sbjct: 78 MFQEGDVVFYSGSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDV 137
Query: 430 ANLRTANASDK 462
+ + +K
Sbjct: 138 FGISKEPSENK 148
>sp|Q6GEP3|ZDH1_STAAR Zinc-type alcohol dehydrogenase-like protein SAR2277
Length = 335
Score = 64.7 bits (156), Expect = 1e-10
Identities = 38/117 (32%), Positives = 59/117 (50%)
Frame = +1
Query: 76 VLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVKLF 255
+L+KV++ SVNP+D + V + P++LG D GTV G +V LF
Sbjct: 33 ILVKVNSISVNPVDTK-------------QRQMEVTQAPRVLGFDAIGTVEAIGPNVTLF 79
Query: 256 KTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVD 426
G V A P +GS+A Y + E+ +A P ++ +A ++P G+TAY D
Sbjct: 80 SPGDVVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFD 136
>sp|Q8NVD1|ZDH1_STAAW Zinc-type alcohol dehydrogenase-like protein MW2112
sp|Q6G7C8|ZDH1_STAAS Zinc-type alcohol dehydrogenase-like protein SAS2087
Length = 335
Score = 64.3 bits (155), Expect = 1e-10
Identities = 38/117 (32%), Positives = 58/117 (49%)
Frame = +1
Query: 76 VLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVKLF 255
+L+KV++ SVNP+D + V + P++LG D GTV G V LF
Sbjct: 33 ILVKVNSISVNPVDTK-------------QRQMEVTQAPRVLGFDAIGTVEAIGPDVTLF 79
Query: 256 KTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVD 426
G V A P +GS+A Y + E+ +A P ++ +A ++P G+TAY D
Sbjct: 80 SPGDVVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFD 136
>sp|P99173|ZDH1_STAAN Zinc-type alcohol dehydrogenase-like protein SA1988
sp|P63475|ZDH1_STAAM Zinc-type alcohol dehydrogenase-like protein SAV2186
Length = 335
Score = 64.3 bits (155), Expect = 1e-10
Identities = 38/117 (32%), Positives = 58/117 (49%)
Frame = +1
Query: 76 VLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVKLF 255
+L+KV++ SVNP+D + V + P++LG D GTV G V LF
Sbjct: 33 ILVKVNSISVNPVDTK-------------QRQMKVTQAPRVLGFDAIGTVEAIGPDVTLF 79
Query: 256 KTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVD 426
G V A P +GS+A Y + E+ +A P ++ +A ++P G+TAY D
Sbjct: 80 SPGDVVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFD 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,655,310
Number of Sequences: 369166
Number of extensions: 967422
Number of successful extensions: 2541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)