Planaria EST Database


DrC_01834

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01834
         (467 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7T3C7|RT4I1_BRARE  Reticulon-4-interacting protein 1 hom...   123   2e-28
sp|Q8WWV3|RT4I1_HUMAN  Reticulon-4-interacting protein 1, mi...   119   3e-27
sp|Q924D0|RT4I1_MOUSE  Reticulon-4-interacting protein 1, mi...   116   2e-26
sp|Q8H0M1|QORH_SPIOL  Chloroplastic quinone-oxidoreductase h...    80   2e-15
sp|Q9SV68|QORH_ARATH  Putative chloroplastic quinone-oxidore...    74   2e-13
sp|Q9ZUC1|QORL_ARATH  Quinone oxidoreductase-like protein At...    68   1e-11
sp|Q8CRJ7|ZDH1_STAES  Zinc-type alcohol dehydrogenase-like p...    67   3e-11
sp|Q6GEP3|ZDH1_STAAR  Zinc-type alcohol dehydrogenase-like p...    65   1e-10
sp|Q8NVD1|ZDH1_STAAW  Zinc-type alcohol dehydrogenase-like p...    64   1e-10
sp|P99173|ZDH1_STAAN  Zinc-type alcohol dehydrogenase-like p...    64   1e-10
>sp|Q7T3C7|RT4I1_BRARE Reticulon-4-interacting protein 1 homolog, mitochondrial precursor
          Length = 387

 Score =  123 bits (309), Expect = 2e-28
 Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
 Frame = +1

Query: 7   YGDINDLRLTSSYRIPIITNPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVE- 183
           YG  + LR T +  +PII  PN V++KV AA +NPID+S+  GYGA+T  +     N+  
Sbjct: 37  YGKNDVLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQ 96

Query: 184 ---EFPKILGRDFCGTVVKTGRSVKLFKTGMEVIGALWPFEEGSHADYVVCHESQLALKP 354
              EFP ILGRD  G +++ G  VK FK G +V  A+ P+++GS A++VV   ++++ KP
Sbjct: 97  SGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIPPWKQGSLAEFVVVSGNEVSHKP 156

Query: 355 QSLKCIDAAAIPYAGLTAYSALVDFANLRTANASDKR 465
           +SL+  +AA+IPY   TA+SA+V+   L   N++ KR
Sbjct: 157 KSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKR 193
>sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1, mitochondrial precursor
           (NOGO-interacting mitochondrial protein)
          Length = 396

 Score =  119 bits (298), Expect = 3e-27
 Identities = 67/157 (42%), Positives = 97/157 (61%), Gaps = 4/157 (2%)
 Frame = +1

Query: 7   YGDINDLRLTSSYRIPIITNPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNV-- 180
           YG    LR T +  +PII  PN V++KV AASVNPID+++ SGYGA+   +     +V  
Sbjct: 51  YGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKI 110

Query: 181 --EEFPKILGRDFCGTVVKTGRSVKLFKTGMEVIGALWPFEEGSHADYVVCHESQLALKP 354
             EEFP  LGRD  G V++ G  VK FK G EV  A+ P+++G+ +++VV   ++++ KP
Sbjct: 111 KGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKP 170

Query: 355 QSLKCIDAAAIPYAGLTAYSALVDFANLRTANASDKR 465
           +SL    AA++PY  LTA+SA+     L   N + KR
Sbjct: 171 KSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKR 207
>sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1, mitochondrial precursor
           (NOGO-interacting mitochondrial protein)
          Length = 396

 Score =  116 bits (291), Expect = 2e-26
 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 4/157 (2%)
 Frame = +1

Query: 7   YGDINDLRLTSSYRIPIITNPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNV-- 180
           YG    LR T +  +PII  PN V+IKV AASVNPID+++ SGYGA+   +     ++  
Sbjct: 51  YGKNEVLRFTQNMMLPIIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNMKRDPLHMKT 110

Query: 181 --EEFPKILGRDFCGTVVKTGRSVKLFKTGMEVIGALWPFEEGSHADYVVCHESQLALKP 354
             EEFP  LGRD  G V++ G  VK F+ G EV  A+ P+++G+ +++VV   ++++ KP
Sbjct: 111 KGEEFPLTLGRDVSGVVMECGLDVKYFQPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKP 170

Query: 355 QSLKCIDAAAIPYAGLTAYSALVDFANLRTANASDKR 465
           +SL    AA++PY  LTA+SA+     L   N   KR
Sbjct: 171 KSLTHTQAASLPYVALTAWSAINKVGGLSDKNCKGKR 207
>sp|Q8H0M1|QORH_SPIOL Chloroplastic quinone-oxidoreductase homolog (ceQORH)
          Length = 329

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 44/132 (33%), Positives = 72/132 (54%)
 Frame = +1

Query: 70  NHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVK 249
           + +L+K++AA++NPID  I  G        + +     +FP I G D  G VV+ G +V 
Sbjct: 34  DELLLKIEAATLNPIDWKIQKG--------VLRPLLPRKFPTIPGTDVAGEVVQAGSAVN 85

Query: 250 LFKTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVDF 429
            FKTG +V+  L     G+ A+Y V  E+    +P  +   + AA+P A LTA+ AL  F
Sbjct: 86  RFKTGDKVVAVLSHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQF 145

Query: 430 ANLRTANASDKR 465
           AN++   + +++
Sbjct: 146 ANIKLDGSGERK 157
>sp|Q9SV68|QORH_ARATH Putative chloroplastic quinone-oxidoreductase homolog
          Length = 329

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
 Frame = +1

Query: 46  RIPIIT-NPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGT 222
           ++P+ T   N V +K++A S+NP+D  I  G        + + F   +FP I   D  G 
Sbjct: 25  QVPVPTPKSNEVCLKLEATSLNPVDWKIQKG--------MIRPFLPRKFPCIPATDVAGE 76

Query: 223 VVKTGRSVKLFKTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGL 402
           VV+ G  VK FK G +V+  L     G  A++ V  E     +PQ +   +AAA+P AGL
Sbjct: 77  VVEVGSGVKNFKAGDKVVAVLSHLGGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGL 136

Query: 403 TAYSALVDFANLRTANASDK 462
           TA  AL + A L+      K
Sbjct: 137 TALQALTNPAGLKLDGTGKK 156
>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740, chloroplast
           precursor
          Length = 386

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
 Frame = +1

Query: 4   NYGDINDLRLTSSYRIPIITNPNHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVE 183
           +YG ++ L+L S+  +P I   + VLIKV AA++NP+D     G   +T   +       
Sbjct: 85  DYGGVDVLKLESNIVVPEIKE-DQVLIKVVAAALNPVDAKRRQGKFKATDSPL------- 136

Query: 184 EFPKILGRDFCGTVVKTGRSVKLFKTGMEVIGAL------WPFEEGSHADYVVCHESQLA 345
             P + G D  G VVK G +VK  K G EV   +       P + GS A+Y    E  LA
Sbjct: 137 --PTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLA 194

Query: 346 LKPQSLKCIDAAAIPYAGLTAYSALV 423
           LKP+++    AA +P A  TA   LV
Sbjct: 195 LKPKNIDFAQAAGLPLAIETADEGLV 220
>sp|Q8CRJ7|ZDH1_STAES Zinc-type alcohol dehydrogenase-like protein SE1777
          Length = 336

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 40/131 (30%), Positives = 65/131 (49%)
 Frame = +1

Query: 70  NHVLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVK 249
           + +L+KV + SVNP+D                +   V++ P++LG D  G + K G  V 
Sbjct: 31  HELLVKVQSISVNPVDTK-------------QRTMPVDKVPRVLGFDAVGVIEKIGDQVS 77

Query: 250 LFKTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVDF 429
           +F+ G  V  +  P + GS+ +Y +  E  +A  P +LK   AA++P  GLTAY  L D 
Sbjct: 78  MFQEGDVVFYSGSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDV 137

Query: 430 ANLRTANASDK 462
             +    + +K
Sbjct: 138 FGISKEPSENK 148
>sp|Q6GEP3|ZDH1_STAAR Zinc-type alcohol dehydrogenase-like protein SAR2277
          Length = 335

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 38/117 (32%), Positives = 59/117 (50%)
 Frame = +1

Query: 76  VLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVKLF 255
           +L+KV++ SVNP+D                +   V + P++LG D  GTV   G +V LF
Sbjct: 33  ILVKVNSISVNPVDTK-------------QRQMEVTQAPRVLGFDAIGTVEAIGPNVTLF 79

Query: 256 KTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVD 426
             G  V  A  P  +GS+A Y +  E+ +A  P ++   +A ++P  G+TAY    D
Sbjct: 80  SPGDVVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFD 136
>sp|Q8NVD1|ZDH1_STAAW Zinc-type alcohol dehydrogenase-like protein MW2112
 sp|Q6G7C8|ZDH1_STAAS Zinc-type alcohol dehydrogenase-like protein SAS2087
          Length = 335

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 38/117 (32%), Positives = 58/117 (49%)
 Frame = +1

Query: 76  VLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVKLF 255
           +L+KV++ SVNP+D                +   V + P++LG D  GTV   G  V LF
Sbjct: 33  ILVKVNSISVNPVDTK-------------QRQMEVTQAPRVLGFDAIGTVEAIGPDVTLF 79

Query: 256 KTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVD 426
             G  V  A  P  +GS+A Y +  E+ +A  P ++   +A ++P  G+TAY    D
Sbjct: 80  SPGDVVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFD 136
>sp|P99173|ZDH1_STAAN Zinc-type alcohol dehydrogenase-like protein SA1988
 sp|P63475|ZDH1_STAAM Zinc-type alcohol dehydrogenase-like protein SAV2186
          Length = 335

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 38/117 (32%), Positives = 58/117 (49%)
 Frame = +1

Query: 76  VLIKVDAASVNPIDLSIISGYGASTFKIIGKYFNVEEFPKILGRDFCGTVVKTGRSVKLF 255
           +L+KV++ SVNP+D                +   V + P++LG D  GTV   G  V LF
Sbjct: 33  ILVKVNSISVNPVDTK-------------QRQMKVTQAPRVLGFDAIGTVEAIGPDVTLF 79

Query: 256 KTGMEVIGALWPFEEGSHADYVVCHESQLALKPQSLKCIDAAAIPYAGLTAYSALVD 426
             G  V  A  P  +GS+A Y +  E+ +A  P ++   +A ++P  G+TAY    D
Sbjct: 80  SPGDVVFYAGSPNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFD 136
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,655,310
Number of Sequences: 369166
Number of extensions: 967422
Number of successful extensions: 2541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)