Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01829
(873 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NCC3|LYPA3_HUMAN 1-O-acylceramide synthase precursor (... 181 2e-45
sp|Q8VEB4|LYPA3_MOUSE 1-O-acylceramide synthase precursor (... 178 2e-44
sp|P53760|LCAT_CHICK Phosphatidylcholine-sterol acyltransfe... 162 1e-39
sp|P16301|LCAT_MOUSE Phosphatidylcholine-sterol acyltransfe... 150 4e-36
sp|P53761|LCAT_RABIT Phosphatidylcholine-sterol acyltransfe... 146 8e-35
sp|Q08758|LCAT_PAPAN Phosphatidylcholine-sterol acyltransfe... 142 9e-34
sp|P04180|LCAT_HUMAN Phosphatidylcholine-sterol acyltransfe... 140 5e-33
sp|P18424|LCAT_RAT Phosphatidylcholine-sterol acyltransfera... 140 6e-33
sp|O35724|LCAT_MICMN Phosphatidylcholine-sterol acyltransfe... 106 7e-23
sp|O35840|LCAT_TATKG Phosphatidylcholine-sterol acyltransfe... 103 5e-22
>sp|Q8NCC3|LYPA3_HUMAN 1-O-acylceramide synthase precursor (ACS) (Lysosomal phospholipase
A2) (Lysophospholipase 3) (LPLA2) (LCAT-like
lysophospholipase) (LLPL)
Length = 412
Score = 181 bits (460), Expect = 2e-45
Identities = 104/295 (35%), Positives = 162/295 (54%), Gaps = 7/295 (2%)
Frame = +2
Query: 2 RTTYSPKYIKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPY 181
R T P + V GFG +++FL S+ SYF+ + L + YT D+RGAPY
Sbjct: 103 RATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVG-WGYTRGEDVRGAPY 161
Query: 182 DFRKAPNEMKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYI 361
D+R+APNE YF ++ +IE+MY G V+++ HS+GN+ T F + Q WKDKYI
Sbjct: 162 DWRRAPNENGPYFLALREMIEEMY-QLYGGPVVLVAHSMGNMYTLYFLQRQPQAWKDKYI 220
Query: 362 RSFISISAPYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLW-PNV 538
R+F+S+ AP+ G TL+ + SG + + +K+R+ Q S S ++ P + W P
Sbjct: 221 RAFVSLGAPWGGVAKTLRVLASGDNNRIPVIGPLKIREQQRSAVSTSWLLPYNYTWSPEK 280
Query: 539 PLVLTNSKNFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPS 718
V T + N+T ++ + F+ E+ +D E ++ + P V+ HC++G G+ TP
Sbjct: 281 VFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPD 340
Query: 719 TLDYRQKQFPDMLPDIIYTDGDGTVPTHSMLICPQWKNQQ------SQLGYSKHI 865
+ Y + FPD P I + DGDGTV S L C W+++Q +L S+HI
Sbjct: 341 SFYY--ESFPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHI 393
>sp|Q8VEB4|LYPA3_MOUSE 1-O-acylceramide synthase precursor (ACS) (Lysosomal phospholipase
A2) (Lysophospholipase 3) (LCAT-like lysophospholipase)
(LLPL)
Length = 412
Score = 178 bits (452), Expect = 2e-44
Identities = 102/295 (34%), Positives = 162/295 (54%), Gaps = 7/295 (2%)
Frame = +2
Query: 2 RTTYSPKYIKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPY 181
R T P + V GFG +++FL ++ SYFY + L + YT D+RGAPY
Sbjct: 103 RATQFPDGVDVRVPGFGETFSMEFLDPSKRNVGSYFYTMVESLVG-WGYTRGEDVRGAPY 161
Query: 182 DFRKAPNEMKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYI 361
D+R+APNE YF ++ +IE+MY G V+++ HS+GN+ F + Q WKDKYI
Sbjct: 162 DWRRAPNENGPYFLALREMIEEMY-QMYGGPVVLVAHSMGNVYMLYFLQRQPQVWKDKYI 220
Query: 362 RSFISISAPYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWPNVP 541
+F+S+ AP+ G TL+ + SG + + +K+R+ Q S S ++ P + W +
Sbjct: 221 HAFVSLGAPWGGVAKTLRVLASGDNNRIPVIGPLKIREQQRSAVSTSWLLPYNHTWSHEK 280
Query: 542 L-VLTNSKNFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPS 718
+ V T + N+T ++ + F+ E+ +D E ++ P VE HC++G G+ TP+
Sbjct: 281 VFVYTPTTNYTLRDYHRFFRDIGFEDGWFMRQDTEGLVEAMTPPGVELHCLYGTGVPTPN 340
Query: 719 TLDYRQKQFPDMLPDIIYTDGDGTVPTHSMLICPQWKNQQ------SQLGYSKHI 865
+ Y + FPD P I + DGDGTV S+L C W+++Q +L S+HI
Sbjct: 341 SFYY--ESFPDRDPKICFGDGDGTVNLESVLQCQAWQSRQEHRVSLQELPGSEHI 393
>sp|P53760|LCAT_CHICK Phosphatidylcholine-sterol acyltransferase precursor
(Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase)
Length = 413
Score = 162 bits (409), Expect = 1e-39
Identities = 97/275 (35%), Positives = 148/275 (53%), Gaps = 2/275 (0%)
Frame = +2
Query: 26 IKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPYDFRKAPNE 205
+ + GFG ++++L + L Y + + L N+ Y + +R APYD+R P E
Sbjct: 118 VHIRVPGFGKTYSVEYLDQSK--LAGYLHTLVQNLVNN-GYVRDQTVRAAPYDWRVGPQE 174
Query: 206 MKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYIRSFISISA 385
YF ++K LIE+M+ D V +IGHS+GNL F Q Q WKD+YI FIS+ A
Sbjct: 175 QPEYFQNLKALIEEMH-DEYQQRVFLIGHSMGNLNVLYFLLQQKQAWKDQYIGGFISLGA 233
Query: 386 PYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWP-NVPLVLTNSK 562
P+ GSV L+ + SG + +++IKLR+ Q + +M P S WP + + T S
Sbjct: 234 PWGGSVKPLRVLASGDNQGIPLMSNIKLREEQRMTTTSPWMFPTSLAWPEDHVFISTPSY 293
Query: 563 NFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPSTLDYRQKQ 742
N+T ++ F +E+ ++D + +K P V+T+C++G G T T Y +
Sbjct: 294 NYTYRDYQRFFTDVNLEDGWYMWEDMKDLLKGLPPPGVDTYCLYGTGYPTVETYIY-DEH 352
Query: 743 FPDMLP-DIIYTDGDGTVPTHSMLICPQWKNQQSQ 844
FP P D+IY DGD TV S +C +W+NQQ Q
Sbjct: 353 FPYEDPVDMIYGDGDDTVNKRSSELCKRWRNQQKQ 387
>sp|P16301|LCAT_MOUSE Phosphatidylcholine-sterol acyltransferase precursor
(Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase)
Length = 438
Score = 150 bits (379), Expect = 4e-36
Identities = 89/275 (32%), Positives = 145/275 (52%), Gaps = 2/275 (0%)
Frame = +2
Query: 26 IKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPYDFRKAPNE 205
+++ GFG ++++++ + L Y + + L N+ Y + +R APYD+R AP++
Sbjct: 120 VQIRVPGFGKTESVEYVD--DNKLAGYLHTLVQNLVNN-GYVRDETVRAAPYDWRLAPHQ 176
Query: 206 MKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYIRSFISISA 385
Y+ + L+E+MYA A G V +IGHSLG L F + Q WKD +I FIS+ A
Sbjct: 177 QDEYYKKLAGLVEEMYA-AYGKPVFLIGHSLGCLHVLHFLLRQPQSWKDHFIDGFISLGA 235
Query: 386 PYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWP-NVPLVLTNSK 562
P+ GS+ ++ + SG + L++IKL++ Q + +M P +WP + + T +
Sbjct: 236 PWGGSIKAMRILASGDNQGIPILSNIKLKEEQRITTTSPWMLPAPHVWPEDHVFISTPNF 295
Query: 563 NFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPSTLDYRQKQ 742
N+T ++ F E F ++ +P VE +C++G+G TP T Y
Sbjct: 296 NYTVQDFERFFTDLHFEEGWHMFLQSRDLLERLPAPGVEVYCLYGVGRPTPHTYIY-DHN 354
Query: 743 FPDMLP-DIIYTDGDGTVPTHSMLICPQWKNQQSQ 844
FP P +Y DGD TV T S +C QW+ +QSQ
Sbjct: 355 FPYKDPVAALYEDGDDTVATRSTELCGQWQGRQSQ 389
>sp|P53761|LCAT_RABIT Phosphatidylcholine-sterol acyltransferase precursor
(Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase)
Length = 440
Score = 146 bits (368), Expect = 8e-35
Identities = 91/283 (32%), Positives = 147/283 (51%), Gaps = 2/283 (0%)
Frame = +2
Query: 2 RTTYSPKYIKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPY 181
R SP +++ GFG ++++L N L Y + + L N+ Y + +R APY
Sbjct: 113 RVVISPG-VQIRVPGFGKTYSVEYLD--NNKLAGYMHTLVQNLVNN-GYVRDETVRAAPY 168
Query: 182 DFRKAPNEMKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYI 361
D+R P++ + Y+ + L+E+M+A A G V +IGHSLG L F + Q WKD++I
Sbjct: 169 DWRLEPSQQEEYYGKLAGLVEEMHA-AYGKPVFLIGHSLGCLHLLYFLLRQPQSWKDRFI 227
Query: 362 RSFISISAPYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWP-NV 538
FIS+ AP+ GS+ + + SG + ++ IKLR+ Q + +M P+ +WP +
Sbjct: 228 DGFISLGAPWGGSIKPMLVLASGDNQGIPLMSSIKLREEQRITTTSPWMFPSQGVWPEDH 287
Query: 539 PLVLTNSKNFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPS 718
+ T S N+T ++ F+ E + + +P VE +C++G+GL TP
Sbjct: 288 VFISTPSFNYTGRDFKRFFEDLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGIGLPTPH 347
Query: 719 TLDYRQKQFPDMLP-DIIYTDGDGTVPTHSMLICPQWKNQQSQ 844
T Y FP P ++Y DGD TV T S +C W+ +Q Q
Sbjct: 348 TYIY-DHGFPYTDPVGVLYEDGDDTVATSSTDLCGLWRGRQPQ 389
>sp|Q08758|LCAT_PAPAN Phosphatidylcholine-sterol acyltransferase precursor
(Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase)
Length = 440
Score = 142 bits (359), Expect = 9e-34
Identities = 87/275 (31%), Positives = 142/275 (51%), Gaps = 2/275 (0%)
Frame = +2
Query: 26 IKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPYDFRKAPNE 205
+++ GFG ++++L + L Y + + L N+ Y + +R APYD+R P +
Sbjct: 120 VQIRVPGFGKTYSVEYLD--SSKLAGYLHTLVQNLVNN-GYVRDETVRAAPYDWRLEPGQ 176
Query: 206 MKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYIRSFISISA 385
+ Y+ + L+E+M+A A G V +IGHSLG L F + Q WKD++I FIS+ A
Sbjct: 177 QEEYYHKLAGLVEEMHA-AYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGA 235
Query: 386 PYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWP-NVPLVLTNSK 562
P+ GS+ + + SG + ++ IKL++ Q + +M P+ WP + + T S
Sbjct: 236 PWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRITTTSPWMFPSRLAWPEDHVFISTPSF 295
Query: 563 NFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPSTLDYRQKQ 742
N+T ++ F E + + +P VE +C++G+GL TP T Y
Sbjct: 296 NYTGRDFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIY-DHG 354
Query: 743 FPDMLP-DIIYTDGDGTVPTHSMLICPQWKNQQSQ 844
FP P D++Y DGD TV T S +C W+ +Q Q
Sbjct: 355 FPYTDPVDVLYEDGDDTVATRSTELCGLWQGRQPQ 389
>sp|P04180|LCAT_HUMAN Phosphatidylcholine-sterol acyltransferase precursor
(Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase)
Length = 440
Score = 140 bits (353), Expect = 5e-33
Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 2/275 (0%)
Frame = +2
Query: 26 IKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPYDFRKAPNE 205
+++ GFG ++++L + L Y + + L N+ Y + +R APYD+R P +
Sbjct: 120 VQIRVPGFGKTYSVEYLD--SSKLAGYLHTLVQNLVNN-GYVRDETVRAAPYDWRLEPGQ 176
Query: 206 MKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYIRSFISISA 385
+ Y+ + L+E+M+A A G V +IGHSLG L F + Q WKD++I FIS+ A
Sbjct: 177 QEEYYRKLAGLVEEMHA-AYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGA 235
Query: 386 PYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWP-NVPLVLTNSK 562
P+ GS+ + + SG + ++ IKL++ Q + +M P+ WP + + T S
Sbjct: 236 PWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRITTTSPWMFPSRMAWPEDHVFISTPSF 295
Query: 563 NFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPSTLDYRQKQ 742
N+T ++ F E + + +P VE +C++G+GL TP T Y
Sbjct: 296 NYTGRDFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIY-DHG 354
Query: 743 FPDMLP-DIIYTDGDGTVPTHSMLICPQWKNQQSQ 844
FP P ++Y DGD TV T S +C W+ +Q Q
Sbjct: 355 FPYTDPVGVLYEDGDDTVATRSTELCGLWQGRQPQ 389
>sp|P18424|LCAT_RAT Phosphatidylcholine-sterol acyltransferase precursor
(Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase)
Length = 440
Score = 140 bits (352), Expect = 6e-33
Identities = 88/275 (32%), Positives = 140/275 (50%), Gaps = 2/275 (0%)
Frame = +2
Query: 26 IKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPYDFRKAPNE 205
+++ GFG ++++L + L Y + L N+ Y + +R APYD+R AP +
Sbjct: 120 VQIRVPGFGKTYSVEYLD--DNKLAGYLNTLVQNLVNN-GYVRDETVRAAPYDWRLAPRQ 176
Query: 206 MKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYIRSFISISA 385
Y+ + L+E+MYA A G V +IGHSLG L F + Q WKD +I FIS+ A
Sbjct: 177 QDEYYQKLAGLVEEMYA-AYGKPVFLIGHSLGCLHVLHFLLRQPQSWKDHFIDGFISLGA 235
Query: 386 PYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWP-NVPLVLTNSK 562
P+ GS+ ++ + SG + +++IKLR+ Q + +M P +WP + + T +
Sbjct: 236 PWGGSIKPMRILASGDNQGIPIMSNIKLREEQRITTTSPWMFPAHHVWPEDHVFISTPNF 295
Query: 563 NFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPSTLDYRQKQ 742
N+T ++ F E F + +P VE +C++G+G+ T T Y
Sbjct: 296 NYTGQDFERFFADLHFEEGWHMFLQSRDLLAGLPAPGVEVYCLYGVGMPTAHTYIY-DHN 354
Query: 743 FPDMLP-DIIYTDGDGTVPTHSMLICPQWKNQQSQ 844
FP P +Y DGD TV T S +C Q + +QSQ
Sbjct: 355 FPYKDPVAALYEDGDDTVATRSTELCGQVQGRQSQ 389
>sp|O35724|LCAT_MICMN Phosphatidylcholine-sterol acyltransferase (Lecithin-cholesterol
acyltransferase) (Phospholipid-cholesterol
acyltransferase)
Length = 299
Score = 106 bits (265), Expect = 7e-23
Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 2/278 (0%)
Frame = +2
Query: 26 IKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPYDFRKAPNE 205
+++ GFG ++++L + L Y + + L N+ Y + +R APYD+R AP++
Sbjct: 40 VQIRVPGFGKTYSVEYLD--DNKLAGYLHTLVQNLVNNA-YVRDETVRAAPYDWRLAPSQ 96
Query: 206 MKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYIRSFISISA 385
Y+ + L+E+MY DA G V +IGH LG L F + Q WK
Sbjct: 97 QDEYYQKLAELVEEMY-DAYGKPVFLIGHRLGCLHVLHFL--LHQSWK------------ 141
Query: 386 PYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWPNVPLVL-TNSK 562
GI +++IKL++ Q + +M P +WP + + T +
Sbjct: 142 ----------GI--------PIMSNIKLKEEQRITTTSPWMFPAHHVWPEDHVFISTPNF 183
Query: 563 NFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPSTLDYRQKQ 742
N+T ++ F E F ++ +P VE +C++G+G T T Y
Sbjct: 184 NYTGQDFKRFFADLHFEEGWYMFLQSRDLLEGLPAPGVEVYCLYGVGRPTRYTYIY-DHN 242
Query: 743 FPDMLP-DIIYTDGDGTVPTHSMLICPQWKNQQSQLGY 853
FP P I+Y DGD TV T S +C QW+ +QSQ Y
Sbjct: 243 FPYKDPVAILYEDGDETVATRSTELCGQWQGRQSQPVY 280
>sp|O35840|LCAT_TATKG Phosphatidylcholine-sterol acyltransferase (Lecithin-cholesterol
acyltransferase) (Phospholipid-cholesterol
acyltransferase)
Length = 293
Score = 103 bits (258), Expect = 5e-22
Identities = 77/275 (28%), Positives = 124/275 (45%), Gaps = 2/275 (0%)
Frame = +2
Query: 26 IKVEASGFGSIDTIKFLSKFNFSLTSYFYHIANLLTNSYNYTANIDIRGAPYDFRKAPNE 205
+++ GFG ++++L + L Y + + L N+ Y + +R APYD+R P++
Sbjct: 38 VEIRVPGFGKTYSVEYLD--DNKLAEYMHTLVQNLVNN-GYVRDETVRAAPYDWRLEPSQ 94
Query: 206 MKTYFSDVKTLIEKMYADANGTSVIIIGHSLGNLLTQEFFHQISQKWKDKYIRSFISISA 385
Y+ + LIE+MYA A G V +IGHSLG L F +
Sbjct: 95 QDDYYQKLAGLIEEMYA-AYGKPVFLIGHSLGCLHVLYFLLR------------------ 135
Query: 386 PYSGSVVTLQGILSGFSGTHDFLNHIKLRKMQNSFPSFYYMSPNSKLWPNVPLVLTNSK- 562
QGI ++ IKLR+ Q + +M P+ +WP + ++ +
Sbjct: 136 ---------QGI--------PIMSSIKLREEQRITTTSPWMFPDRDVWPEDHVFISTPEF 178
Query: 563 NFTAKNMNEIFKLSKVENSIEHFKDQEKYMKNRISPKVETHCIFGLGLKTPSTLDYRQKQ 742
N+T ++ F E + + +P V+ +C++G+GL TP T Y
Sbjct: 179 NYTGQDFERFFSDLHFEEGWYMWLQSRDLLAGLPAPGVDVYCLYGVGLPTPHTYIY-DHN 237
Query: 743 FPDMLP-DIIYTDGDGTVPTHSMLICPQWKNQQSQ 844
FP P +Y DGD TV T S +C QW+ +QSQ
Sbjct: 238 FPYKDPVAALYEDGDDTVATRSTELCGQWQGRQSQ 272
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,356,668
Number of Sequences: 369166
Number of extensions: 2355669
Number of successful extensions: 6200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6163
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)