Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01824
(607 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CWD3|NUD17_MOUSE Nucleoside diphosphate-linked moiety ... 107 2e-23
sp|P0C025|NUD17_HUMAN Putative nucleoside diphosphate-linke... 102 6e-22
sp|Q6PEC0|AP4A_RAT Bis(5'-nucleosyl)-tetraphosphatase [Asym... 39 0.008
sp|P56380|AP4A_MOUSE Bis(5'-nucleosyl)-tetraphosphatase [As... 39 0.008
sp|Q94A82|NUD19_ARATH Probable NADH pyrophosphatase NUDT19,... 38 0.017
sp|P52006|YFAO_ECOLI Putative Nudix hydrolase yfaO 38 0.023
sp|Q7VPB7|NUDH_HAEDU Probable (di)nucleoside polyphosphate ... 37 0.051
sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety ... 36 0.087
sp|P75965|YMFB_ECOLI Putative Nudix hydrolase ymfB 36 0.087
sp|P57809|NUDH_PASMU Probable (di)nucleoside polyphosphate ... 36 0.087
>sp|Q9CWD3|NUD17_MOUSE Nucleoside diphosphate-linked moiety X motif 17, mitochondrial
precursor (Nudix motif 17)
Length = 296
Score = 107 bits (267), Expect = 2e-23
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Frame = +1
Query: 1 LRTFPNVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNF 180
LR PN+WV GGH++ +E + + REL+EE G++L + LL WES +P L++
Sbjct: 115 LRISPNLWVPPGGHMEPDEEILECGFRELWEECGLQLPKNQFSCVLLGLWESAYPPRLSW 174
Query: 181 GMPKYHHLVLYYKVVITNKNFQLD-KLSVNVDEVSEYCWLDKDKVAAIVRS--------- 330
G PKYHHL+LY V+ QL ++ VN +EV+ + WL D AA+V +
Sbjct: 175 GFPKYHHLILYVLVISQESQEQLQARIQVNPNEVNAFMWLGPDVAAAVVATEDGTRTPGL 234
Query: 331 FTDPLDLSILSDYTKKEISEKFEAVKVTSIDSKLEHEKILKPLSLLTGNVNEAREMDLVS 510
F+ L LS+ + T + + ++ P+ L E D
Sbjct: 235 FSQDLPLSVCA----------------TELKDDGGTQPLVLPMPTLMRTTPTTAEED--K 276
Query: 511 ERVSTGTKYALYEWLK 558
ER+ GTK+AL WL+
Sbjct: 277 ERIGAGTKFALQLWLQ 292
>sp|P0C025|NUD17_HUMAN Putative nucleoside diphosphate-linked moiety X motif 17,
mitochondrial precursor (Nudix motif 17)
Length = 295
Score = 102 bits (255), Expect = 6e-22
Identities = 71/188 (37%), Positives = 99/188 (52%), Gaps = 2/188 (1%)
Frame = +1
Query: 1 LRTFPNVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNF 180
L PN+WV GGHV+ E L D LREL+EE+G+ L + L WES +P L++
Sbjct: 115 LSVSPNLWVPPGGHVELEEELLDGGLRELWEESGLHLPQGQFSWVPLGLWESAYPPRLSW 174
Query: 181 GMPKYHHLVLYYKVVITNKNFQLD-KLSVNVDEVSEYCWLDKDKVAAIVRSFTDPLDLSI 357
G+PKYHH+VLY V+ QL ++ N +EVS WL D VAA V + D +
Sbjct: 175 GLPKYHHIVLYLLVISQESQQQLQARIQPNPNEVSALMWLTPD-VAAAVAAAEDGTETPG 233
Query: 358 LSDYTKKEISEKFEAVKVTSIDSKLEHEKILKPLSL-LTGNVNEAREMDLVSERVSTGTK 534
L +++ AV +LE + +PL L ++ + M ERVSTGTK
Sbjct: 234 L---LPQDLPPSVLAV-------ELEEDGRARPLVLHMSTLLRMIPTMAEDKERVSTGTK 283
Query: 535 YALYEWLK 558
+AL WL+
Sbjct: 284 FALKLWLQ 291
>sp|Q6PEC0|AP4A_RAT Bis(5'-nucleosyl)-tetraphosphatase [Asymmetrical] (Diadenosine
5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase)
(Diadenosine tetraphosphatase) (Ap4A hydrolase)
(Ap4Aase) (Nucleoside diphosphate-linked moiety X motif
2) (Nudix motif 2)
Length = 147
Score = 39.3 bits (90), Expect = 0.008
Identities = 31/102 (30%), Positives = 46/102 (45%)
Frame = +1
Query: 22 WVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNFGMPKYHH 201
W GHVD EN + ALRE EETGIE S+ + F LN+ K
Sbjct: 38 WTPPKGHVDPGENDLETALRETQEETGIEASQLIV--------LEGFRRELNYVARKKPK 89
Query: 202 LVLYYKVVITNKNFQLDKLSVNVDEVSEYCWLDKDKVAAIVR 327
V+Y+ + + + ++ +LS E Y WL D+ + +
Sbjct: 90 TVIYWLAEVKDYDVEI-RLS---QEHQAYRWLGLDEACQLAQ 127
>sp|P56380|AP4A_MOUSE Bis(5'-nucleosyl)-tetraphosphatase [Asymmetrical] (Diadenosine
5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase)
(Diadenosine tetraphosphatase) (Ap4A hydrolase)
(Ap4Aase) (Nucleoside diphosphate-linked moiety X motif
2) (Nudix motif 2)
Length = 147
Score = 39.3 bits (90), Expect = 0.008
Identities = 31/102 (30%), Positives = 46/102 (45%)
Frame = +1
Query: 22 WVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNFGMPKYHH 201
W GHVD EN + ALRE EETGIE S+ I F LN+ +
Sbjct: 38 WTPPKGHVDPGENDLETALRETREETGIEASQLTI--------IEGFRRELNYVARQKPK 89
Query: 202 LVLYYKVVITNKNFQLDKLSVNVDEVSEYCWLDKDKVAAIVR 327
V+Y+ + + N ++ +LS E Y WL ++ + +
Sbjct: 90 TVIYWLAEVKDYNVEI-RLS---QEHQAYRWLGLEEACQLAQ 127
>sp|Q94A82|NUD19_ARATH Probable NADH pyrophosphatase NUDT19, chloroplast precursor (Nudix
hydrolase 19) (AtNUDT19)
Length = 438
Score = 38.1 bits (87), Expect = 0.017
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 4 RTFPNVWVAAGGHVDTNENLEDAALRELFEETGIEL 111
R P +W G ++ E+LE+A RE +EETGIE+
Sbjct: 266 RYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEV 301
>sp|P52006|YFAO_ECOLI Putative Nudix hydrolase yfaO
Length = 141
Score = 37.7 bits (86), Expect = 0.023
Identities = 24/96 (25%), Positives = 45/96 (46%)
Frame = +1
Query: 10 FPNVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNFGMP 189
FP W +GG V+ E +E+A RE+ EE G +L +I S + T+ +
Sbjct: 29 FPGQWAISGGGVEPGERIEEALRREIREELGEQLLLTEI-TPWTFSDDIRTKTYADGRKE 87
Query: 190 KYHHLVLYYKVVITNKNFQLDKLSVNVDEVSEYCWL 297
+ + + L + V N+ +++ +E +Y W+
Sbjct: 88 EIYMIYLIFDCVSANREVKIN------EEFQDYAWV 117
>sp|Q7VPB7|NUDH_HAEDU Probable (di)nucleoside polyphosphate hydrolase
Length = 197
Score = 36.6 bits (83), Expect = 0.051
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 16 NVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNFGMPK 192
N W G ++ EN+E A REL+EE G L++KD+ + W S + +L + +PK
Sbjct: 31 NSWQFPQGGINEGENIETAMYRELYEEVG--LTKKDVRL----LWASKY--WLKYKLPK 81
>sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety X motif 6 (Nudix motif 6)
(Protein GFG) (GFG-1) (Antisense basic fibroblast growth
factor)
Length = 316
Score = 35.8 bits (81), Expect = 0.087
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 16 NVWVAAGGHVDTNENLEDAALRELFEETGIE 108
N+W GG + E++ D A+RE+FEETGI+
Sbjct: 169 NMWKFPGGLSEPEEDIGDTAVREVFEETGIK 199
>sp|P75965|YMFB_ECOLI Putative Nudix hydrolase ymfB
Length = 153
Score = 35.8 bits (81), Expect = 0.087
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 19 VWVAAGGHVDTNENLEDAALRELFEETGI 105
+W GH++ +E L +AA REL+EETGI
Sbjct: 30 LWNQPAGHLEADETLVEAAARELWEETGI 58
>sp|P57809|NUDH_PASMU Probable (di)nucleoside polyphosphate hydrolase
Length = 198
Score = 35.8 bits (81), Expect = 0.087
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 16 NVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEI 132
N W G ++ NE+ E A RELFEE G LS KD++I
Sbjct: 31 NSWQFPQGGINDNESAEQAMYRELFEEVG--LSPKDVKI 67
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,500,470
Number of Sequences: 369166
Number of extensions: 1142815
Number of successful extensions: 3208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3200
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)