Planaria EST Database


DrC_01824

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01824
         (607 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CWD3|NUD17_MOUSE  Nucleoside diphosphate-linked moiety ...   107   2e-23
sp|P0C025|NUD17_HUMAN  Putative nucleoside diphosphate-linke...   102   6e-22
sp|Q6PEC0|AP4A_RAT  Bis(5'-nucleosyl)-tetraphosphatase [Asym...    39   0.008
sp|P56380|AP4A_MOUSE  Bis(5'-nucleosyl)-tetraphosphatase [As...    39   0.008
sp|Q94A82|NUD19_ARATH  Probable NADH pyrophosphatase NUDT19,...    38   0.017
sp|P52006|YFAO_ECOLI  Putative Nudix hydrolase yfaO                38   0.023
sp|Q7VPB7|NUDH_HAEDU  Probable (di)nucleoside polyphosphate ...    37   0.051
sp|P53370|NUDT6_HUMAN  Nucleoside diphosphate-linked moiety ...    36   0.087
sp|P75965|YMFB_ECOLI  Putative Nudix hydrolase ymfB                36   0.087
sp|P57809|NUDH_PASMU  Probable (di)nucleoside polyphosphate ...    36   0.087
>sp|Q9CWD3|NUD17_MOUSE Nucleoside diphosphate-linked moiety X motif 17, mitochondrial
           precursor (Nudix motif 17)
          Length = 296

 Score =  107 bits (267), Expect = 2e-23
 Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
 Frame = +1

Query: 1   LRTFPNVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNF 180
           LR  PN+WV  GGH++ +E + +   REL+EE G++L +      LL  WES +P  L++
Sbjct: 115 LRISPNLWVPPGGHMEPDEEILECGFRELWEECGLQLPKNQFSCVLLGLWESAYPPRLSW 174

Query: 181 GMPKYHHLVLYYKVVITNKNFQLD-KLSVNVDEVSEYCWLDKDKVAAIVRS--------- 330
           G PKYHHL+LY  V+      QL  ++ VN +EV+ + WL  D  AA+V +         
Sbjct: 175 GFPKYHHLILYVLVISQESQEQLQARIQVNPNEVNAFMWLGPDVAAAVVATEDGTRTPGL 234

Query: 331 FTDPLDLSILSDYTKKEISEKFEAVKVTSIDSKLEHEKILKPLSLLTGNVNEAREMDLVS 510
           F+  L LS+ +                T +      + ++ P+  L        E D   
Sbjct: 235 FSQDLPLSVCA----------------TELKDDGGTQPLVLPMPTLMRTTPTTAEED--K 276

Query: 511 ERVSTGTKYALYEWLK 558
           ER+  GTK+AL  WL+
Sbjct: 277 ERIGAGTKFALQLWLQ 292
>sp|P0C025|NUD17_HUMAN Putative nucleoside diphosphate-linked moiety X motif 17,
           mitochondrial precursor (Nudix motif 17)
          Length = 295

 Score =  102 bits (255), Expect = 6e-22
 Identities = 71/188 (37%), Positives = 99/188 (52%), Gaps = 2/188 (1%)
 Frame = +1

Query: 1   LRTFPNVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNF 180
           L   PN+WV  GGHV+  E L D  LREL+EE+G+ L +       L  WES +P  L++
Sbjct: 115 LSVSPNLWVPPGGHVELEEELLDGGLRELWEESGLHLPQGQFSWVPLGLWESAYPPRLSW 174

Query: 181 GMPKYHHLVLYYKVVITNKNFQLD-KLSVNVDEVSEYCWLDKDKVAAIVRSFTDPLDLSI 357
           G+PKYHH+VLY  V+      QL  ++  N +EVS   WL  D VAA V +  D  +   
Sbjct: 175 GLPKYHHIVLYLLVISQESQQQLQARIQPNPNEVSALMWLTPD-VAAAVAAAEDGTETPG 233

Query: 358 LSDYTKKEISEKFEAVKVTSIDSKLEHEKILKPLSL-LTGNVNEAREMDLVSERVSTGTK 534
           L     +++     AV       +LE +   +PL L ++  +     M    ERVSTGTK
Sbjct: 234 L---LPQDLPPSVLAV-------ELEEDGRARPLVLHMSTLLRMIPTMAEDKERVSTGTK 283

Query: 535 YALYEWLK 558
           +AL  WL+
Sbjct: 284 FALKLWLQ 291
>sp|Q6PEC0|AP4A_RAT Bis(5'-nucleosyl)-tetraphosphatase [Asymmetrical] (Diadenosine
           5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase)
           (Diadenosine tetraphosphatase) (Ap4A hydrolase)
           (Ap4Aase) (Nucleoside diphosphate-linked moiety X motif
           2) (Nudix motif 2)
          Length = 147

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 31/102 (30%), Positives = 46/102 (45%)
 Frame = +1

Query: 22  WVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNFGMPKYHH 201
           W    GHVD  EN  + ALRE  EETGIE S+  +           F   LN+   K   
Sbjct: 38  WTPPKGHVDPGENDLETALRETQEETGIEASQLIV--------LEGFRRELNYVARKKPK 89

Query: 202 LVLYYKVVITNKNFQLDKLSVNVDEVSEYCWLDKDKVAAIVR 327
            V+Y+   + + + ++ +LS    E   Y WL  D+   + +
Sbjct: 90  TVIYWLAEVKDYDVEI-RLS---QEHQAYRWLGLDEACQLAQ 127
>sp|P56380|AP4A_MOUSE Bis(5'-nucleosyl)-tetraphosphatase [Asymmetrical] (Diadenosine
           5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase)
           (Diadenosine tetraphosphatase) (Ap4A hydrolase)
           (Ap4Aase) (Nucleoside diphosphate-linked moiety X motif
           2) (Nudix motif 2)
          Length = 147

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 31/102 (30%), Positives = 46/102 (45%)
 Frame = +1

Query: 22  WVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNFGMPKYHH 201
           W    GHVD  EN  + ALRE  EETGIE S+  I           F   LN+   +   
Sbjct: 38  WTPPKGHVDPGENDLETALRETREETGIEASQLTI--------IEGFRRELNYVARQKPK 89

Query: 202 LVLYYKVVITNKNFQLDKLSVNVDEVSEYCWLDKDKVAAIVR 327
            V+Y+   + + N ++ +LS    E   Y WL  ++   + +
Sbjct: 90  TVIYWLAEVKDYNVEI-RLS---QEHQAYRWLGLEEACQLAQ 127
>sp|Q94A82|NUD19_ARATH Probable NADH pyrophosphatase NUDT19, chloroplast precursor (Nudix
           hydrolase 19) (AtNUDT19)
          Length = 438

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 4   RTFPNVWVAAGGHVDTNENLEDAALRELFEETGIEL 111
           R  P +W    G ++  E+LE+A  RE +EETGIE+
Sbjct: 266 RYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEV 301
>sp|P52006|YFAO_ECOLI Putative Nudix hydrolase yfaO
          Length = 141

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 24/96 (25%), Positives = 45/96 (46%)
 Frame = +1

Query: 10  FPNVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNFGMP 189
           FP  W  +GG V+  E +E+A  RE+ EE G +L   +I      S +    T+ +    
Sbjct: 29  FPGQWAISGGGVEPGERIEEALRREIREELGEQLLLTEI-TPWTFSDDIRTKTYADGRKE 87

Query: 190 KYHHLVLYYKVVITNKNFQLDKLSVNVDEVSEYCWL 297
           + + + L +  V  N+  +++      +E  +Y W+
Sbjct: 88  EIYMIYLIFDCVSANREVKIN------EEFQDYAWV 117
>sp|Q7VPB7|NUDH_HAEDU Probable (di)nucleoside polyphosphate hydrolase
          Length = 197

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +1

Query: 16  NVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEISLLCSWESTFPTFLNFGMPK 192
           N W    G ++  EN+E A  REL+EE G  L++KD+ +     W S +  +L + +PK
Sbjct: 31  NSWQFPQGGINEGENIETAMYRELYEEVG--LTKKDVRL----LWASKY--WLKYKLPK 81
>sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety X motif 6 (Nudix motif 6)
           (Protein GFG) (GFG-1) (Antisense basic fibroblast growth
           factor)
          Length = 316

 Score = 35.8 bits (81), Expect = 0.087
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 16  NVWVAAGGHVDTNENLEDAALRELFEETGIE 108
           N+W   GG  +  E++ D A+RE+FEETGI+
Sbjct: 169 NMWKFPGGLSEPEEDIGDTAVREVFEETGIK 199
>sp|P75965|YMFB_ECOLI Putative Nudix hydrolase ymfB
          Length = 153

 Score = 35.8 bits (81), Expect = 0.087
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 19  VWVAAGGHVDTNENLEDAALRELFEETGI 105
           +W    GH++ +E L +AA REL+EETGI
Sbjct: 30  LWNQPAGHLEADETLVEAAARELWEETGI 58
>sp|P57809|NUDH_PASMU Probable (di)nucleoside polyphosphate hydrolase
          Length = 198

 Score = 35.8 bits (81), Expect = 0.087
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +1

Query: 16  NVWVAAGGHVDTNENLEDAALRELFEETGIELSRKDIEI 132
           N W    G ++ NE+ E A  RELFEE G  LS KD++I
Sbjct: 31  NSWQFPQGGINDNESAEQAMYRELFEEVG--LSPKDVKI 67
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,500,470
Number of Sequences: 369166
Number of extensions: 1142815
Number of successful extensions: 3208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3200
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)