Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01820
(695 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41667|Y114_NPVAC Hypothetical 49.3 kDa protein in HE65-... 32 1.2
sp|P15605|YM04_PARTE Hypothetical 18.8 kDa protein (ORF4) 31 2.7
sp|O13353|CHS4_MAGGR Chitin synthase 4 (Chitin-UDP acetyl-g... 30 8.0
>sp|P41667|Y114_NPVAC Hypothetical 49.3 kDa protein in HE65-PK2 intergenic region
Length = 424
Score = 32.3 bits (72), Expect = 1.2
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = -3
Query: 522 FALENILVSFYRQNTIRKI*IIQTIDKYKFQSANQNTIIQLYIINNKRHPTEEIRRKTVV 343
+ +ENI ++ + R I I+T+DK KF++ + + + Y++NN HP + ++T++
Sbjct: 197 YHIENIQMNLENKLKPRSI-TIETVDKDKFENKHSDIEV-CYVMNNSLHPQDVNSQQTLM 254
Query: 342 VDS 334
S
Sbjct: 255 CSS 257
>sp|P15605|YM04_PARTE Hypothetical 18.8 kDa protein (ORF4)
Length = 156
Score = 31.2 bits (69), Expect = 2.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 562 VSLFKFLPVLMTFFLVLAQYFMKIIS*FGFFRIFVKSIYTYFGF 693
+ ++K LP+ +TFF + +F + F F +F S + YF +
Sbjct: 66 IEVYKGLPLFVTFFYSVFFFFNYLSGFFFLFFVFFTSFFVYFSY 109
>sp|O13353|CHS4_MAGGR Chitin synthase 4 (Chitin-UDP acetyl-glucosaminyl transferase 4)
(Class-IV chitin synthase 4)
Length = 1198
Score = 29.6 bits (65), Expect = 8.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 238 PFGGPLAHELCLPHAFIGGFVGFDCCCSSV 149
PFG PLAH +CL A+ G +G SV
Sbjct: 677 PFGFPLAHTICLVTAYSEGELGLRTTLDSV 706
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,566,548
Number of Sequences: 369166
Number of extensions: 1382694
Number of successful extensions: 3080
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3079
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)