Planaria EST Database


DrC_01820

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01820
         (695 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41667|Y114_NPVAC  Hypothetical 49.3 kDa protein in HE65-...    32   1.2  
sp|P15605|YM04_PARTE  Hypothetical 18.8 kDa protein (ORF4)         31   2.7  
sp|O13353|CHS4_MAGGR  Chitin synthase 4 (Chitin-UDP acetyl-g...    30   8.0  
>sp|P41667|Y114_NPVAC Hypothetical 49.3 kDa protein in HE65-PK2 intergenic region
          Length = 424

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = -3

Query: 522 FALENILVSFYRQNTIRKI*IIQTIDKYKFQSANQNTIIQLYIINNKRHPTEEIRRKTVV 343
           + +ENI ++   +   R I  I+T+DK KF++ + +  +  Y++NN  HP +   ++T++
Sbjct: 197 YHIENIQMNLENKLKPRSI-TIETVDKDKFENKHSDIEV-CYVMNNSLHPQDVNSQQTLM 254

Query: 342 VDS 334
             S
Sbjct: 255 CSS 257
>sp|P15605|YM04_PARTE Hypothetical 18.8 kDa protein (ORF4)
          Length = 156

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 562 VSLFKFLPVLMTFFLVLAQYFMKIIS*FGFFRIFVKSIYTYFGF 693
           + ++K LP+ +TFF  +  +F  +   F  F +F  S + YF +
Sbjct: 66  IEVYKGLPLFVTFFYSVFFFFNYLSGFFFLFFVFFTSFFVYFSY 109
>sp|O13353|CHS4_MAGGR Chitin synthase 4 (Chitin-UDP acetyl-glucosaminyl transferase 4)
           (Class-IV chitin synthase 4)
          Length = 1198

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 238 PFGGPLAHELCLPHAFIGGFVGFDCCCSSV 149
           PFG PLAH +CL  A+  G +G      SV
Sbjct: 677 PFGFPLAHTICLVTAYSEGELGLRTTLDSV 706
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,566,548
Number of Sequences: 369166
Number of extensions: 1382694
Number of successful extensions: 3080
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3079
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)