Planaria EST Database


DrC_01811

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01811
         (865 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12849|GRSF1_HUMAN  G-rich sequence factor 1 (GRSF-1)           72   2e-12
sp|Q8C5Q4|GRSF1_MOUSE  G-rich sequence factor 1 (GRSF-1)           71   3e-12
sp|P52597|HNRPF_HUMAN  Heterogeneous nuclear ribonucleoprote...    70   8e-12
sp|P55795|HNRH2_HUMAN  Heterogeneous nuclear ribonucleoprote...    70   8e-12
sp|Q60HC3|HNRPF_MACFA  Heterogeneous nuclear ribonucleoprote...    70   8e-12
sp|P70333|HNRH2_MOUSE  Heterogeneous nuclear ribonucleoprote...    70   1e-11
sp|O35737|HNRH1_MOUSE  Heterogeneous nuclear ribonucleoprote...    67   6e-11
sp|P31943|HNRH1_HUMAN  Heterogeneous nuclear ribonucleoprote...    67   6e-11
sp|Q9Y4C8|RBM19_HUMAN  Probable RNA-binding protein 19 (RNA-...    54   7e-07
sp|Q9NTZ6|RBM12_HUMAN  RNA-binding protein 12 (RNA-binding m...    52   2e-06
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1)
          Length = 447

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
 Frame = +3

Query: 9   RGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           +GLP+S T  D+L F +   I N E+GI   LN DG+  G+AL+++++E  +    + + 
Sbjct: 122 QGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 181

Query: 186 KYMGTRFIEVFPATQK--DWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
            YMG R++EV+    +  D   + +++K S +     VRLRGLPY   ++DI  FF+
Sbjct: 182 MYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFA 238

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDG-RPSGEALVKLDNEIGLSDLRDYN 182
           LRGLPYS  E DI+ F  GL   N   I   ++  G R +GEA V+ +     +     +
Sbjct: 221 LRGLPYSCNEKDIVDFFAGL---NIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 277

Query: 183 GKYMGTRFIEVFPATQKD 236
            + +G R+IE+FP+ + +
Sbjct: 278 REEIGNRYIEIFPSRRNE 295

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 171 RDYNGKYMGTRFIEVFPATQKDWFGEEMRMKMSDMTYVRLRGLPYDVTKEDIFIFFS 341
           R Y+ +   T   ++ P  + +    ++  ++ D+  +R +GLP+  T ED+  FFS
Sbjct: 82  RSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS 138

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 598 TGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           TGEA+VQF   E AN AL +H + I +R++
Sbjct: 257 TGEAYVQFEEPEMANQALLKHREEIGNRYI 286
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1)
          Length = 479

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
 Frame = +3

Query: 9   RGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           +GLP+S T  D+L F +   I N E+GI   LN DG+  G+AL+++++E  +    + + 
Sbjct: 154 QGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 213

Query: 186 KYMGTRFIEVFPATQK--DWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
            YMG R++EV+    +  D   + +++K S +     VRLRGLPY   ++DI  FF+
Sbjct: 214 MYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFA 270

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDG-RPSGEALVKLDNEIGLSDLRDYN 182
           LRGLPYS  E DI+ F  GL   N   I   ++  G R +GEA V+ +     +     +
Sbjct: 253 LRGLPYSCNEKDIVDFFAGL---NIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309

Query: 183 GKYMGTRFIEVFPATQKD 236
            + +G R+IE+FP+ + +
Sbjct: 310 REEIGNRYIEIFPSRRNE 327

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 598 TGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           TGEA+VQF   E AN AL +H + I +R++
Sbjct: 289 TGEAYVQFEEPEMANQALLKHREEIGNRYI 318

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 171 RDYNGKYMGTRFIEVFPATQKDWFGEEMRMKMSDMTYVRLRGLPYDVTKEDIFIFFS 341
           R Y+ +   T   ++ P  + +    ++  ++ D+  +R +GLP+  T ED+  FFS
Sbjct: 114 RGYSQESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFS 170
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F (hnRNP F) (Nucleolin-like
           protein mcs94-1)
          Length = 415

 Score = 70.1 bits (170), Expect = 8e-12
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
 Frame = +3

Query: 3   ELRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
           +LRGLP+S +  D+  FL+   I +  +G+      +GR SGEA V+L +E  +      
Sbjct: 14  KLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKK 73

Query: 180 NGKYMGTRFIEVFPA--TQKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
           + + MG R+IEVF +  T+ DW  +      +D     +VRLRGLP+  TKE+I  FFS
Sbjct: 74  DRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFS 132

 Score = 46.6 bits (109), Expect = 9e-05
 Identities = 25/77 (32%), Positives = 48/77 (62%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           LRGLP+  T+ +I+ F +GL I   +GI + ++ +G+ +GEA V+  ++         + 
Sbjct: 115 LRGLPFGCTKEEIVQFFSGLEI-VPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173

Query: 186 KYMGTRFIEVFPATQKD 236
           + +G R+IEVF ++Q++
Sbjct: 174 ERIGHRYIEVFKSSQEE 190

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 26/71 (36%), Positives = 35/71 (49%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           +RGLPY ATE DI  F + L   N   + I +  DGR +GEA V+             + 
Sbjct: 293 MRGLPYKATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349

Query: 186 KYMGTRFIEVF 218
             M  R+IE+F
Sbjct: 350 ANMQHRYIELF 360

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +1

Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           + GL I  +G+ L   P+   TGEAFVQF ++E A  AL +H + I  R++
Sbjct: 131 FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           GPD   TGEA V+F T E+A  A+ +    ++ R++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 282 VRLRGLPYDVTKEDIFIFFS 341
           V +RGLPY  T+ DI+ FFS
Sbjct: 291 VHMRGLPYKATENDIYNFFS 310
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H' (hnRNP H') (FTP-3)
          Length = 449

 Score = 70.1 bits (170), Expect = 8e-12
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
 Frame = +3

Query: 3   ELRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
           ++RGLP+S +  +++ F +   I N  SGI      +GRPSGEA V+L++E  +      
Sbjct: 14  KVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKK 73

Query: 180 NGKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
           + + MG R++EVF +   + DW  +       D     +VRLRGLP+  +KE+I  FFS
Sbjct: 74  DRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 182
           LRGLP+  ++ +I+ F +GL I   +G+ + ++  GR +GEA V+    EI    L+ + 
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173

Query: 183 GKYMGTRFIEVFPATQKD 236
            + +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           +RGLPY ATE DI  F + L   N   + I +  DGR +GEA V+             + 
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349

Query: 186 KYMGTRFIEVF 218
             M  R++E+F
Sbjct: 350 ANMQHRYVELF 360

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           + GL I  +G+ L        TGEAFVQF ++E A  AL++H + I  R++
Sbjct: 131 FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 562 GVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           G+  +Y  +  P+GEAFV+  + E+  LAL++  + +  R+V
Sbjct: 42  GIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYV 83

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           GPD   TGEA V+F T EDA  A+ +    ++ R+V
Sbjct: 322 GPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
          Length = 415

 Score = 70.1 bits (170), Expect = 8e-12
 Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
 Frame = +3

Query: 3   ELRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
           +LRGLP+S +  D+  FL+   I +  +G+      +GR SGEA V+L +E  +      
Sbjct: 14  KLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKK 73

Query: 180 NGKYMGTRFIEVFPA--TQKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
           + + MG R+IEVF +  T+ DW  +      +D     +VRLRGLP+  TKE+I  FFS
Sbjct: 74  DRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFS 132

 Score = 46.6 bits (109), Expect = 9e-05
 Identities = 25/77 (32%), Positives = 48/77 (62%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           LRGLP+  T+ +I+ F +GL I   +GI + ++ +G+ +GEA V+  ++         + 
Sbjct: 115 LRGLPFGCTKEEIVQFFSGLEI-VPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173

Query: 186 KYMGTRFIEVFPATQKD 236
           + +G R+IEVF ++Q++
Sbjct: 174 ERIGHRYIEVFKSSQEE 190

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 26/71 (36%), Positives = 35/71 (49%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           +RGLPY ATE DI  F + L   N   + I +  DGR +GEA V+             + 
Sbjct: 293 MRGLPYKATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349

Query: 186 KYMGTRFIEVF 218
             M  R+IE+F
Sbjct: 350 ANMQHRYIELF 360

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +1

Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           + GL I  +G+ L   P+   TGEAFVQF ++E A  AL +H + I  R++
Sbjct: 131 FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           GPD   TGEA V+F T E+A  A+ +    ++ R++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 282 VRLRGLPYDVTKEDIFIFFS 341
           V +RGLPY  T+ DI+ FFS
Sbjct: 291 VHMRGLPYKATENDIYNFFS 310
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')
          Length = 449

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
 Frame = +3

Query: 3   ELRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
           ++RGLP+S +  +++ F +   I N  SG+      +GRPSGEA V+L++E  +      
Sbjct: 14  KVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKK 73

Query: 180 NGKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
           + + MG R++EVF +   + DW  +       D     +VRLRGLP+  +KE+I  FFS
Sbjct: 74  DRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 182
           LRGLP+  ++ +I+ F +GL I   +G+ + ++  GR +GEA V+    EI    L+ + 
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173

Query: 183 GKYMGTRFIEVFPATQKD 236
            + +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           +RGLPY ATE DI  F + L   N   + I +  DGR +GEA V+             + 
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349

Query: 186 KYMGTRFIEVF 218
             M  R++E+F
Sbjct: 350 ANMQHRYVELF 360

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           + GL I  +G+ L        TGEAFVQF ++E A  AL++H + I  R++
Sbjct: 131 FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 562 GVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           GV  +Y  +  P+GEAFV+  + ++  LAL++  + +  R+V
Sbjct: 42  GVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYV 83

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           GPD   TGEA V+F T EDA  A+ +    ++ R+V
Sbjct: 322 GPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H (hnRNP H)
          Length = 449

 Score = 67.0 bits (162), Expect = 6e-11
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
 Frame = +3

Query: 3   ELRGLPYSATETDILTFLNGLPIWNES-GILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
           ++RGLP+S +  ++  F +   I N + GI      +GRPSGEA V+L++E  +      
Sbjct: 14  KVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKK 73

Query: 180 NGKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
           + + MG R++EVF +   + DW  +       D     +VRLRGLP+  +KE+I  FFS
Sbjct: 74  DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 182
           LRGLP+  ++ +I+ F +GL I   +GI + ++  GR +GEA V+    EI    L+ + 
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173

Query: 183 GKYMGTRFIEVFPATQKD 236
            + +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           +RGLPY ATE DI  F + L   N   + I +  DGR +GEA V+             + 
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349

Query: 186 KYMGTRFIEVF 218
             M  R++E+F
Sbjct: 350 ANMQHRYVELF 360

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           + GL I  +G+ L        TGEAFVQF ++E A  AL++H + I  R++
Sbjct: 131 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 562 GVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           G+  +Y  +  P+GEAFV+  + ++  LAL++  + +  R+V
Sbjct: 42  GIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYV 83

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           GPD   TGEA V+F T EDA  A+ +    ++ R+V
Sbjct: 322 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 357

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
 Frame = +3

Query: 156 GLSDLRDYNGKYMGTRFIEVFPATQKDWFGEEMRM---KMSDMTY--------------V 284
           G     DYNG   G  F         D FG ++      MSD  Y              V
Sbjct: 239 GYGGYDDYNGYNDGYGF-------GSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCV 291

Query: 285 RLRGLPYDVTKEDIFIFFS 341
            +RGLPY  T+ DI+ FFS
Sbjct: 292 HMRGLPYRATENDIYNFFS 310
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H (hnRNP H)
          Length = 449

 Score = 67.0 bits (162), Expect = 6e-11
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
 Frame = +3

Query: 3   ELRGLPYSATETDILTFLNGLPIWNES-GILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
           ++RGLP+S +  ++  F +   I N + GI      +GRPSGEA V+L++E  +      
Sbjct: 14  KVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKK 73

Query: 180 NGKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
           + + MG R++EVF +   + DW  +       D     +VRLRGLP+  +KE+I  FFS
Sbjct: 74  DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 182
           LRGLP+  ++ +I+ F +GL I   +GI + ++  GR +GEA V+    EI    L+ + 
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173

Query: 183 GKYMGTRFIEVFPATQKD 236
            + +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           +RGLPY ATE DI  F + L   N   + I +  DGR +GEA V+             + 
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349

Query: 186 KYMGTRFIEVF 218
             M  R++E+F
Sbjct: 350 ANMQHRYVELF 360

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           + GL I  +G+ L        TGEAFVQF ++E A  AL++H + I  R++
Sbjct: 131 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 562 GVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           G+  +Y  +  P+GEAFV+  + ++  LAL++  + +  R+V
Sbjct: 42  GIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYV 83

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           GPD   TGEA V+F T EDA  A+ +    ++ R+V
Sbjct: 322 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 357

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
 Frame = +3

Query: 156 GLSDLRDYNGKYMGTRFIEVFPATQKDWFGEEMRM---KMSDMTY--------------V 284
           G     DYNG   G  F         D FG ++      MSD  Y              V
Sbjct: 239 GYGGYDDYNGYNDGYGF-------GSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCV 291

Query: 285 RLRGLPYDVTKEDIFIFFS 341
            +RGLPY  T+ DI+ FFS
Sbjct: 292 HMRGLPYRATENDIYNFFS 310
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 (RNA-binding motif protein 19)
          Length = 960

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
 Frame = +3

Query: 3   ELRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYN 182
           +LRG P++ TE +++ FL  L       I I  N  G  +G   V   NE  +      N
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353

Query: 183 GKYMGTRFIEVF-----PATQ-------KDWFG-----EEMRMKMSDMTYVRLRGLPYDV 311
            +YMG R+IEVF     P T+       K W G      E    +++   + +R LPY  
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413

Query: 312 TKEDIFIFFSR 344
           T+ED+   FS+
Sbjct: 414 TEEDLEKLFSK 424
>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 (RNA-binding motif protein 12) (SH3/WW
           domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 33/101 (32%), Positives = 49/101 (48%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           L+GLP+ A    ++ F   L I  +S I I    +G+ +GE  V+  NE         + 
Sbjct: 434 LKGLPFEAENKHVIDFFKKLDIVEDS-IYIAYGPNGKATGEGFVEFRNEADYKAALCRHK 492

Query: 186 KYMGTRFIEVFPATQKDWFGEEMRMKMSDMTYVRLRGLPYD 308
           +YMG RFI+V P T+K        ++  DM   RL+   YD
Sbjct: 493 QYMGNRFIQVHPITKKG------MLEKIDMIRKRLQNFSYD 527

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
           + G+P+SA E D+  F +GL +     + +  +  GR +G  LVK  +     +    N 
Sbjct: 308 VHGMPFSAMENDVRDFFHGLRV---DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNR 364

Query: 186 KYMGTRFIEVFPATQKDW 239
             M  R++EV PAT++ W
Sbjct: 365 MLMIQRYVEVSPATERQW 382

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 17/49 (34%), Positives = 35/49 (71%)
 Frame = +3

Query: 6   LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNE 152
           +  +P+S T+ D+L FL G+P+ +E+ + + ++++G+  G+ALV+  NE
Sbjct: 548 ITNIPFSITKMDVLQFLEGIPV-DENAVHVLVDNNGQGLGQALVQFKNE 595

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +1

Query: 544 LMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
           L I  D + + YGP+   TGE FV+F    D   AL RH Q + +R++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 500

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 17/72 (23%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +3

Query: 3    ELRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDN-EIGLSDLRDY 179
            +++ +P++ +  +IL F  G  +   S + +  N+ G P+GEA+V  ++ +   + + D 
Sbjct: 859  KVQNMPFTVSIDEILDFFYGYQVIPGS-VCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917

Query: 180  NGKYMGTRFIEV 215
            N + +G+R +++
Sbjct: 918  NDRPIGSRKVKL 929
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,514,125
Number of Sequences: 369166
Number of extensions: 1667688
Number of successful extensions: 3644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3617
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)