Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01811
(865 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1) 72 2e-12
sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1) 71 3e-12
sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprote... 70 8e-12
sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprote... 70 8e-12
sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprote... 70 8e-12
sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprote... 70 1e-11
sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprote... 67 6e-11
sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprote... 67 6e-11
sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 (RNA-... 54 7e-07
sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 (RNA-binding m... 52 2e-06
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 (GRSF-1)
Length = 447
Score = 72.0 bits (175), Expect = 2e-12
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Frame = +3
Query: 9 RGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+GLP+S T D+L F + I N E+GI LN DG+ G+AL+++++E + + +
Sbjct: 122 QGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 181
Query: 186 KYMGTRFIEVFPATQK--DWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
YMG R++EV+ + D + +++K S + VRLRGLPY ++DI FF+
Sbjct: 182 MYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFA 238
Score = 42.0 bits (97), Expect = 0.002
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDG-RPSGEALVKLDNEIGLSDLRDYN 182
LRGLPYS E DI+ F GL N I ++ G R +GEA V+ + + +
Sbjct: 221 LRGLPYSCNEKDIVDFFAGL---NIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 277
Query: 183 GKYMGTRFIEVFPATQKD 236
+ +G R+IE+FP+ + +
Sbjct: 278 REEIGNRYIEIFPSRRNE 295
Score = 32.0 bits (71), Expect = 2.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 171 RDYNGKYMGTRFIEVFPATQKDWFGEEMRMKMSDMTYVRLRGLPYDVTKEDIFIFFS 341
R Y+ + T ++ P + + ++ ++ D+ +R +GLP+ T ED+ FFS
Sbjct: 82 RSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFS 138
Score = 31.6 bits (70), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 598 TGEAFVQFMTREDANLALQRHNQCIRSRWV 687
TGEA+VQF E AN AL +H + I +R++
Sbjct: 257 TGEAYVQFEEPEMANQALLKHREEIGNRYI 286
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 (GRSF-1)
Length = 479
Score = 71.2 bits (173), Expect = 3e-12
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Frame = +3
Query: 9 RGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+GLP+S T D+L F + I N E+GI LN DG+ G+AL+++++E + + +
Sbjct: 154 QGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 213
Query: 186 KYMGTRFIEVFPATQK--DWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
YMG R++EV+ + D + +++K S + VRLRGLPY ++DI FF+
Sbjct: 214 MYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFA 270
Score = 42.0 bits (97), Expect = 0.002
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDG-RPSGEALVKLDNEIGLSDLRDYN 182
LRGLPYS E DI+ F GL N I ++ G R +GEA V+ + + +
Sbjct: 253 LRGLPYSCNEKDIVDFFAGL---NIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 183 GKYMGTRFIEVFPATQKD 236
+ +G R+IE+FP+ + +
Sbjct: 310 REEIGNRYIEIFPSRRNE 327
Score = 31.6 bits (70), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 598 TGEAFVQFMTREDANLALQRHNQCIRSRWV 687
TGEA+VQF E AN AL +H + I +R++
Sbjct: 289 TGEAYVQFEEPEMANQALLKHREEIGNRYI 318
Score = 30.0 bits (66), Expect = 8.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 171 RDYNGKYMGTRFIEVFPATQKDWFGEEMRMKMSDMTYVRLRGLPYDVTKEDIFIFFS 341
R Y+ + T ++ P + + ++ ++ D+ +R +GLP+ T ED+ FFS
Sbjct: 114 RGYSQESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFS 170
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F (hnRNP F) (Nucleolin-like
protein mcs94-1)
Length = 415
Score = 70.1 bits (170), Expect = 8e-12
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Frame = +3
Query: 3 ELRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
+LRGLP+S + D+ FL+ I + +G+ +GR SGEA V+L +E +
Sbjct: 14 KLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKK 73
Query: 180 NGKYMGTRFIEVFPA--TQKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
+ + MG R+IEVF + T+ DW + +D +VRLRGLP+ TKE+I FFS
Sbjct: 74 DRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFS 132
Score = 46.6 bits (109), Expect = 9e-05
Identities = 25/77 (32%), Positives = 48/77 (62%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
LRGLP+ T+ +I+ F +GL I +GI + ++ +G+ +GEA V+ ++ +
Sbjct: 115 LRGLPFGCTKEEIVQFFSGLEI-VPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 186 KYMGTRFIEVFPATQKD 236
+ +G R+IEVF ++Q++
Sbjct: 174 ERIGHRYIEVFKSSQEE 190
Score = 39.7 bits (91), Expect = 0.011
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYKATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349
Query: 186 KYMGTRFIEVF 218
M R+IE+F
Sbjct: 350 ANMQHRYIELF 360
Score = 39.3 bits (90), Expect = 0.014
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
+ GL I +G+ L P+ TGEAFVQF ++E A AL +H + I R++
Sbjct: 131 FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
Score = 30.4 bits (67), Expect = 6.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
GPD TGEA V+F T E+A A+ + ++ R++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357
Score = 30.0 bits (66), Expect = 8.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 282 VRLRGLPYDVTKEDIFIFFS 341
V +RGLPY T+ DI+ FFS
Sbjct: 291 VHMRGLPYKATENDIYNFFS 310
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H' (hnRNP H') (FTP-3)
Length = 449
Score = 70.1 bits (170), Expect = 8e-12
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Frame = +3
Query: 3 ELRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
++RGLP+S + +++ F + I N SGI +GRPSGEA V+L++E +
Sbjct: 14 KVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKK 73
Query: 180 NGKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
+ + MG R++EVF + + DW + D +VRLRGLP+ +KE+I FFS
Sbjct: 74 DRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 182
LRGLP+ ++ +I+ F +GL I +G+ + ++ GR +GEA V+ EI L+ +
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 183 GKYMGTRFIEVFPATQKD 236
+ +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190
Score = 38.9 bits (89), Expect = 0.019
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 186 KYMGTRFIEVF 218
M R++E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 35.4 bits (80), Expect = 0.21
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
+ GL I +G+ L TGEAFVQF ++E A AL++H + I R++
Sbjct: 131 FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
Score = 33.5 bits (75), Expect = 0.79
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 562 GVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
G+ +Y + P+GEAFV+ + E+ LAL++ + + R+V
Sbjct: 42 GIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYV 83
Score = 32.0 bits (71), Expect = 2.3
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
GPD TGEA V+F T EDA A+ + ++ R+V
Sbjct: 322 GPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
Length = 415
Score = 70.1 bits (170), Expect = 8e-12
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Frame = +3
Query: 3 ELRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
+LRGLP+S + D+ FL+ I + +G+ +GR SGEA V+L +E +
Sbjct: 14 KLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKK 73
Query: 180 NGKYMGTRFIEVFPA--TQKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
+ + MG R+IEVF + T+ DW + +D +VRLRGLP+ TKE+I FFS
Sbjct: 74 DRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFS 132
Score = 46.6 bits (109), Expect = 9e-05
Identities = 25/77 (32%), Positives = 48/77 (62%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
LRGLP+ T+ +I+ F +GL I +GI + ++ +G+ +GEA V+ ++ +
Sbjct: 115 LRGLPFGCTKEEIVQFFSGLEI-VPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 186 KYMGTRFIEVFPATQKD 236
+ +G R+IEVF ++Q++
Sbjct: 174 ERIGHRYIEVFKSSQEE 190
Score = 39.7 bits (91), Expect = 0.011
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYKATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349
Query: 186 KYMGTRFIEVF 218
M R+IE+F
Sbjct: 350 ANMQHRYIELF 360
Score = 39.3 bits (90), Expect = 0.014
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
+ GL I +G+ L P+ TGEAFVQF ++E A AL +H + I R++
Sbjct: 131 FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
Score = 30.4 bits (67), Expect = 6.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
GPD TGEA V+F T E+A A+ + ++ R++
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357
Score = 30.0 bits (66), Expect = 8.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 282 VRLRGLPYDVTKEDIFIFFS 341
V +RGLPY T+ DI+ FFS
Sbjct: 291 VHMRGLPYKATENDIYNFFS 310
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')
Length = 449
Score = 69.7 bits (169), Expect = 1e-11
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Frame = +3
Query: 3 ELRGLPYSATETDILTFLNGLPIWN-ESGILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
++RGLP+S + +++ F + I N SG+ +GRPSGEA V+L++E +
Sbjct: 14 KVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKK 73
Query: 180 NGKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
+ + MG R++EVF + + DW + D +VRLRGLP+ +KE+I FFS
Sbjct: 74 DRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 182
LRGLP+ ++ +I+ F +GL I +G+ + ++ GR +GEA V+ EI L+ +
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 183 GKYMGTRFIEVFPATQKD 236
+ +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190
Score = 38.9 bits (89), Expect = 0.019
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 186 KYMGTRFIEVF 218
M R++E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 35.4 bits (80), Expect = 0.21
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
+ GL I +G+ L TGEAFVQF ++E A AL++H + I R++
Sbjct: 131 FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
Score = 32.7 bits (73), Expect = 1.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 562 GVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
GV +Y + P+GEAFV+ + ++ LAL++ + + R+V
Sbjct: 42 GVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYV 83
Score = 32.0 bits (71), Expect = 2.3
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
GPD TGEA V+F T EDA A+ + ++ R+V
Sbjct: 322 GPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H (hnRNP H)
Length = 449
Score = 67.0 bits (162), Expect = 6e-11
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Frame = +3
Query: 3 ELRGLPYSATETDILTFLNGLPIWNES-GILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
++RGLP+S + ++ F + I N + GI +GRPSGEA V+L++E +
Sbjct: 14 KVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKK 73
Query: 180 NGKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
+ + MG R++EVF + + DW + D +VRLRGLP+ +KE+I FFS
Sbjct: 74 DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132
Score = 43.9 bits (102), Expect = 6e-04
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 182
LRGLP+ ++ +I+ F +GL I +GI + ++ GR +GEA V+ EI L+ +
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 183 GKYMGTRFIEVFPATQKD 236
+ +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190
Score = 39.3 bits (90), Expect = 0.014
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 186 KYMGTRFIEVF 218
M R++E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 36.2 bits (82), Expect = 0.12
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
+ GL I +G+ L TGEAFVQF ++E A AL++H + I R++
Sbjct: 131 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 562 GVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
G+ +Y + P+GEAFV+ + ++ LAL++ + + R+V
Sbjct: 42 GIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYV 83
Score = 32.3 bits (72), Expect = 1.8
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
GPD TGEA V+F T EDA A+ + ++ R+V
Sbjct: 322 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 357
Score = 30.8 bits (68), Expect = 5.1
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Frame = +3
Query: 156 GLSDLRDYNGKYMGTRFIEVFPATQKDWFGEEMRM---KMSDMTY--------------V 284
G DYNG G F D FG ++ MSD Y V
Sbjct: 239 GYGGYDDYNGYNDGYGF-------GSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCV 291
Query: 285 RLRGLPYDVTKEDIFIFFS 341
+RGLPY T+ DI+ FFS
Sbjct: 292 HMRGLPYRATENDIYNFFS 310
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H (hnRNP H)
Length = 449
Score = 67.0 bits (162), Expect = 6e-11
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Frame = +3
Query: 3 ELRGLPYSATETDILTFLNGLPIWNES-GILITLNDDGRPSGEALVKLDNEIGLSDLRDY 179
++RGLP+S + ++ F + I N + GI +GRPSGEA V+L++E +
Sbjct: 14 KVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKK 73
Query: 180 NGKYMGTRFIEVFPAT--QKDWFGEEMRMKMSDMT---YVRLRGLPYDVTKEDIFIFFS 341
+ + MG R++EVF + + DW + D +VRLRGLP+ +KE+I FFS
Sbjct: 74 DRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFS 132
Score = 43.9 bits (102), Expect = 6e-04
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKL-DNEIGLSDLRDYN 182
LRGLP+ ++ +I+ F +GL I +GI + ++ GR +GEA V+ EI L+ +
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEI-VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 183 GKYMGTRFIEVFPATQKD 236
+ +G R+IE+F +++ +
Sbjct: 174 ER-IGHRYIEIFKSSRAE 190
Score = 39.3 bits (90), Expect = 0.014
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+RGLPY ATE DI F + L N + I + DGR +GEA V+ +
Sbjct: 293 MRGLPYRATENDIYNFFSPL---NPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 186 KYMGTRFIEVF 218
M R++E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 36.2 bits (82), Expect = 0.12
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 535 YVGLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
+ GL I +G+ L TGEAFVQF ++E A AL++H + I R++
Sbjct: 131 FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 562 GVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
G+ +Y + P+GEAFV+ + ++ LAL++ + + R+V
Sbjct: 42 GIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYV 83
Score = 32.3 bits (72), Expect = 1.8
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 580 GPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
GPD TGEA V+F T EDA A+ + ++ R+V
Sbjct: 322 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 357
Score = 30.8 bits (68), Expect = 5.1
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Frame = +3
Query: 156 GLSDLRDYNGKYMGTRFIEVFPATQKDWFGEEMRM---KMSDMTY--------------V 284
G DYNG G F D FG ++ MSD Y V
Sbjct: 239 GYGGYDDYNGYNDGYGF-------GSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCV 291
Query: 285 RLRGLPYDVTKEDIFIFFS 341
+RGLPY T+ DI+ FFS
Sbjct: 292 HMRGLPYRATENDIYNFFS 310
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 (RNA-binding motif protein 19)
Length = 960
Score = 53.5 bits (127), Expect = 7e-07
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Frame = +3
Query: 3 ELRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYN 182
+LRG P++ TE +++ FL L I I N G +G V NE + N
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 183 GKYMGTRFIEVF-----PATQ-------KDWFG-----EEMRMKMSDMTYVRLRGLPYDV 311
+YMG R+IEVF P T+ K W G E +++ + +R LPY
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 312 TKEDIFIFFSR 344
T+ED+ FS+
Sbjct: 414 TEEDLEKLFSK 424
>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 (RNA-binding motif protein 12) (SH3/WW
domain anchor protein in the nucleus) (SWAN)
Length = 932
Score = 52.0 bits (123), Expect = 2e-06
Identities = 33/101 (32%), Positives = 49/101 (48%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
L+GLP+ A ++ F L I +S I I +G+ +GE V+ NE +
Sbjct: 434 LKGLPFEAENKHVIDFFKKLDIVEDS-IYIAYGPNGKATGEGFVEFRNEADYKAALCRHK 492
Query: 186 KYMGTRFIEVFPATQKDWFGEEMRMKMSDMTYVRLRGLPYD 308
+YMG RFI+V P T+K ++ DM RL+ YD
Sbjct: 493 QYMGNRFIQVHPITKKG------MLEKIDMIRKRLQNFSYD 527
Score = 43.9 bits (102), Expect = 6e-04
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLSDLRDYNG 185
+ G+P+SA E D+ F +GL + + + + GR +G LVK + + N
Sbjct: 308 VHGMPFSAMENDVRDFFHGLRV---DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNR 364
Query: 186 KYMGTRFIEVFPATQKDW 239
M R++EV PAT++ W
Sbjct: 365 MLMIQRYVEVSPATERQW 382
Score = 41.6 bits (96), Expect = 0.003
Identities = 17/49 (34%), Positives = 35/49 (71%)
Frame = +3
Query: 6 LRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNE 152
+ +P+S T+ D+L FL G+P+ +E+ + + ++++G+ G+ALV+ NE
Sbjct: 548 ITNIPFSITKMDVLQFLEGIPV-DENAVHVLVDNNGQGLGQALVQFKNE 595
Score = 40.0 bits (92), Expect = 0.008
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 544 LMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCIRSRWV 687
L I D + + YGP+ TGE FV+F D AL RH Q + +R++
Sbjct: 453 LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 500
Score = 31.6 bits (70), Expect = 3.0
Identities = 17/72 (23%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 ELRGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDN-EIGLSDLRDY 179
+++ +P++ + +IL F G + S + + N+ G P+GEA+V ++ + + + D
Sbjct: 859 KVQNMPFTVSIDEILDFFYGYQVIPGS-VCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 180 NGKYMGTRFIEV 215
N + +G+R +++
Sbjct: 918 NDRPIGSRKVKL 929
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,514,125
Number of Sequences: 369166
Number of extensions: 1667688
Number of successful extensions: 3644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3617
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)