Planaria EST Database


DrC_01804

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01804
         (281 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41257|SYI_CAMJE  Isoleucyl-tRNA synthetase (Isoleucine--...    29   3.8  
sp|Q85437|VP5_RDVF  Minor core protein P5                          29   3.8  
sp|Q00267|NHOA_SALTY  N-hydroxyarylamine O-acetyltransferase...    28   6.5  
sp|P53753|YN96_YEAST  Hypothetical 121.1 kDa protein in BIO3...    28   6.5  
sp|Q46855|YQHC_ECOLI  Putative HTH-type transcriptional regu...    28   6.5  
>sp|P41257|SYI_CAMJE Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
          Length = 917

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 84  LLNGEEQMSLAASVFKTVTTFSPLQSRNSLKIIGEN 191
           L +GE Q  L A  F+ +   +PL  R S+ I+GE+
Sbjct: 278 LTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEH 313
>sp|Q85437|VP5_RDVF Minor core protein P5
          Length = 801

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
 Frame = -2

Query: 166 FRLWRGLKVVTVLKTLAASDIC-------SSPFNNTDVILRLSLYRHFISDPIII 23
           F  W G K  TVL        C       S+  N +  +L L++  HF++ P+I+
Sbjct: 667 FHYWSGSKTFTVLSHFEVPHECGPLVFEASTDVNVSGHLLSLAIAAHFVASPMIL 721
>sp|Q00267|NHOA_SALTY N-hydroxyarylamine O-acetyltransferase (Arylhydroxamate
           N,O-acetyltransferase) (Arylamine N-acetyltransferase)
           (NAT101)
          Length = 281

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 205 FLHLKFSPIIFNEFRLWRGLKVVTVLKTLAASDICSSPFNNTDVIL 68
           FLH  F+ +         G+  V  L+TL  +  C+ PF N DV+L
Sbjct: 4   FLHAYFTRLHCQPL----GVPTVEALRTLHLAHNCAIPFENLDVLL 45
>sp|P53753|YN96_YEAST Hypothetical 121.1 kDa protein in BIO3-HXT17 intergenic region
           precursor
          Length = 1117

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 51  LYSESLRITSVLLNGEEQMSLAASVFKTVTTFSPLQSRNSLKIIGENFKCRKT 209
           L+S SL I+   LNG    S++      + T  P  S    KII  +    KT
Sbjct: 173 LFSSSLSISGTQLNGTLLTSVSKGTIDPLVTQMPSYSSQETKIIPSSLTSNKT 225
>sp|Q46855|YQHC_ECOLI Putative HTH-type transcriptional regulator yqhC
          Length = 318

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 54  YSESLRITSVLLNGEEQMSLAASVFKTVTTFSPLQSRNSLKIIGENFKCRKTRLIVI 224
           Y+E+L +  +       +S     FK+VT+ SPLQ         +N++  K R+++I
Sbjct: 223 YTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL-------KNYRLHKARMMII 272
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,927,806
Number of Sequences: 369166
Number of extensions: 489468
Number of successful extensions: 1313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)