Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01804
(281 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41257|SYI_CAMJE Isoleucyl-tRNA synthetase (Isoleucine--... 29 3.8
sp|Q85437|VP5_RDVF Minor core protein P5 29 3.8
sp|Q00267|NHOA_SALTY N-hydroxyarylamine O-acetyltransferase... 28 6.5
sp|P53753|YN96_YEAST Hypothetical 121.1 kDa protein in BIO3... 28 6.5
sp|Q46855|YQHC_ECOLI Putative HTH-type transcriptional regu... 28 6.5
>sp|P41257|SYI_CAMJE Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
Length = 917
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 84 LLNGEEQMSLAASVFKTVTTFSPLQSRNSLKIIGEN 191
L +GE Q L A F+ + +PL R S+ I+GE+
Sbjct: 278 LTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEH 313
>sp|Q85437|VP5_RDVF Minor core protein P5
Length = 801
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Frame = -2
Query: 166 FRLWRGLKVVTVLKTLAASDIC-------SSPFNNTDVILRLSLYRHFISDPIII 23
F W G K TVL C S+ N + +L L++ HF++ P+I+
Sbjct: 667 FHYWSGSKTFTVLSHFEVPHECGPLVFEASTDVNVSGHLLSLAIAAHFVASPMIL 721
>sp|Q00267|NHOA_SALTY N-hydroxyarylamine O-acetyltransferase (Arylhydroxamate
N,O-acetyltransferase) (Arylamine N-acetyltransferase)
(NAT101)
Length = 281
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 205 FLHLKFSPIIFNEFRLWRGLKVVTVLKTLAASDICSSPFNNTDVIL 68
FLH F+ + G+ V L+TL + C+ PF N DV+L
Sbjct: 4 FLHAYFTRLHCQPL----GVPTVEALRTLHLAHNCAIPFENLDVLL 45
>sp|P53753|YN96_YEAST Hypothetical 121.1 kDa protein in BIO3-HXT17 intergenic region
precursor
Length = 1117
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 51 LYSESLRITSVLLNGEEQMSLAASVFKTVTTFSPLQSRNSLKIIGENFKCRKT 209
L+S SL I+ LNG S++ + T P S KII + KT
Sbjct: 173 LFSSSLSISGTQLNGTLLTSVSKGTIDPLVTQMPSYSSQETKIIPSSLTSNKT 225
>sp|Q46855|YQHC_ECOLI Putative HTH-type transcriptional regulator yqhC
Length = 318
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 54 YSESLRITSVLLNGEEQMSLAASVFKTVTTFSPLQSRNSLKIIGENFKCRKTRLIVI 224
Y+E+L + + +S FK+VT+ SPLQ +N++ K R+++I
Sbjct: 223 YTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL-------KNYRLHKARMMII 272
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,927,806
Number of Sequences: 369166
Number of extensions: 489468
Number of successful extensions: 1313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)