Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01788
(315 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase 32 0.45
sp|Q9CNH1|GLND_PASMU [Protein-PII] uridylyltransferase (PII... 31 0.77
sp|O83409|TOP1_TREPA DNA topoisomerase I (Omega-protein) (R... 28 6.5
sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule ... 28 8.5
sp|Q9NQ38|ISK5_HUMAN Serine protease inhibitor Kazal-type 5... 28 8.5
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
Length = 329
Score = 32.0 bits (71), Expect = 0.45
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = -2
Query: 251 PLGLSHRKCATLTVF----WDRKGILKIDFTEEIINSEYYCNIL-LETRNIRRKPRNQDL 87
P+ S R TV + K L+I F +NS Y N+L LE R +D
Sbjct: 167 PMVFSRRNFGGGTVMVWGAFTEKKKLEIQFVSSKMNSTDYQNVLELELSKYLRHYSRKDF 226
Query: 86 YLLHDNAPIHTSRKTQE 36
DNA IH S T++
Sbjct: 227 RFQQDNATIHVSNSTRD 243
>sp|Q9CNH1|GLND_PASMU [Protein-PII] uridylyltransferase (PII uridylyl-transferase)
(Uridylyl-removing enzyme) (UTase)
Length = 864
Score = 31.2 bits (69), Expect = 0.77
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 209 FWDRKGILKIDFTEEIINSEYYCNILLETR-NIRRKPRN-QDLYLLHDNAPIHTSRKTQE 36
FW R+ + + E + + Y N +I+ P +DL+LL+ A HT K
Sbjct: 166 FWpreAFFQAKYQERVERYQRYHNTSYNLEPDIKHSPGGLRDLHLLYWIALRHTGAKNLT 225
Query: 35 TLTNAGFV 12
+ N+GF+
Sbjct: 226 DILNSGFI 233
>sp|O83409|TOP1_TREPA DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 731
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 209 RRSTWHIFDAKVPEARPWMASHFREPIPLT 298
R + + +A V E R W+A+HF + +P T
Sbjct: 314 RTDSVRVSEAAVKEVRAWIATHFSDALPGT 343
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule precursor (CHD2)
Length = 2012
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 269 KPSKVLPLGLSHRKCATLTVFWDRKGILKI-DFTEEIINSEYYCNILLE 126
K S +LP +HR+ A ++ G LK+ D +E+ EY CN+L++
Sbjct: 539 KNSNLLPF--NHRQVA-----FENNGTLKLSDVQKEVDEGEYTCNVLVQ 580
>sp|Q9NQ38|ISK5_HUMAN Serine protease inhibitor Kazal-type 5 precursor (Lympho-epithelial
Kazal-type related inhibitor) (LEKTI) [Contains:
Hemofiltrate peptide HF6478; Hemofiltrate peptide HF7665]
Length = 1064
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -2
Query: 251 PLGLSH-RKCATLTVFWDRKGILKIDFTEEIINSEYYCNILLETRNIRRKPRNQDLYLLH 75
P G H KCA +DR+ + EE +S+ N E R RN +L
Sbjct: 873 PYGKMHINKCAMCQSIFDREANERKKKDEEKSSSKPSNNAKDECSEFRNYIRNNELICPR 932
Query: 74 DNAPIH 57
+N P+H
Sbjct: 933 ENDPVH 938
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,178,323
Number of Sequences: 369166
Number of extensions: 778515
Number of successful extensions: 1885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)