Planaria EST Database


DrC_01776

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01776
         (686 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O18158|OGT1_CAEEL  UDP-N-acetylglucosamine--peptide N-ace...    41   0.003
sp|Q96AY4|K1043_HUMAN  TPR repeat-containing protein KIAA1043      38   0.022
sp|O15294|OGT1_HUMAN  UDP-N-acetylglucosamine--peptide N-ace...    37   0.049
sp|P56558|OGT1_RAT  UDP-N-acetylglucosamine--peptide N-acety...    37   0.049
sp|Q5BK48|TTC5_RAT  Tetratricopeptide repeat protein 5 (TPR ...    35   0.14 
sp|Q99LG4|TTC5_MOUSE  Tetratricopeptide repeat protein 5 (TP...    34   0.32 
sp|P16522|CDC23_YEAST  Anaphase promoting complex subunit CD...    34   0.41 
sp|Q8N0Z6|TTC5_HUMAN  Tetratricopeptide repeat protein 5 (TP...    33   0.54 
sp|O34327|RAPJ_BACSU  Response regulator aspartate phosphata...    33   0.70 
sp|Q86TV6|TTC7B_HUMAN  Tetratricopeptide repeat protein 7B (...    33   0.70 
>sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
           (O-GlcNAc) (OGT)
          Length = 1151

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 30/103 (29%), Positives = 48/103 (46%)
 Frame = +2

Query: 53  AQYHLILAKMHLGMGAYEEAEANLLETVQITFDKADAWAQFGHLKFIVGDEQAAESCFSR 232
           A  H  LA +    G   +A  +  E ++I    ADA++  G+    +GD  AA +C++R
Sbjct: 465 AAAHSNLASILQQQGKLNDAILHYKEAIRIAPTFADAYSNMGNTLKEMGDSSAAIACYNR 524

Query: 233 ALNLVDDIPEPHPVYMRLASIYLIQDKYIEAKQAFLLACKNNP 361
           A+ +     + H     LASI+       EA Q++  A K  P
Sbjct: 525 AIQINPAFADAH---SNLASIHKDAGNMAEAIQSYSTALKLKP 564
>sp|Q96AY4|K1043_HUMAN TPR repeat-containing protein KIAA1043
          Length = 1716

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
 Frame = +2

Query: 71  LAKMHLGMGAYEEA----EANLLETVQI--TFDKADAWAQFGHLKFIVGDEQAAESCFSR 232
           L   H  MG+ ++A    E  L+   ++   F+KA A+ + G L   +G+ + A SC  R
Sbjct: 158 LGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLER 217

Query: 233 ALNLVDDIPE---PHPVYMRLASIYLIQDKYIEAKQAFLLACK-----NNPTC 367
            LN+  D+ +          L  +Y    +Y  A Q   L  +     NNPTC
Sbjct: 218 QLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTC 270
>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
           110 kDa subunit (O-GlcNAc transferase p110 subunit)
          Length = 1046

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 29/103 (28%), Positives = 47/103 (45%)
 Frame = +2

Query: 53  AQYHLILAKMHLGMGAYEEAEANLLETVQITFDKADAWAQFGHLKFIVGDEQAAESCFSR 232
           A  H  LA +    G  +EA  +  E ++I+   ADA++  G+    + D Q A  C++R
Sbjct: 361 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 420

Query: 233 ALNLVDDIPEPHPVYMRLASIYLIQDKYIEAKQAFLLACKNNP 361
           A+ +     + H     LASI+       EA  ++  A K  P
Sbjct: 421 AIQINPAFADAH---SNLASIHKDSGNIPEAIASYRTALKLKP 460
>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
           110 kDa subunit (O-GlcNAc transferase p110 subunit)
          Length = 1036

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 29/103 (28%), Positives = 47/103 (45%)
 Frame = +2

Query: 53  AQYHLILAKMHLGMGAYEEAEANLLETVQITFDKADAWAQFGHLKFIVGDEQAAESCFSR 232
           A  H  LA +    G  +EA  +  E ++I+   ADA++  G+    + D Q A  C++R
Sbjct: 351 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 410

Query: 233 ALNLVDDIPEPHPVYMRLASIYLIQDKYIEAKQAFLLACKNNP 361
           A+ +     + H     LASI+       EA  ++  A K  P
Sbjct: 411 AIQINPAFADAH---SNLASIHKDSGNIPEAIASYRTALKLKP 450
>sp|Q5BK48|TTC5_RAT Tetratricopeptide repeat protein 5 (TPR repeat protein 5)
          Length = 440

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 107 EAEANLLETVQITFDKADAWAQFGHLKFIVGDEQAAESCFSRAL 238
           EAE  L + V++  +  +AW Q G + +  GD  AA +CFS AL
Sbjct: 87  EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTCFSGAL 130
>sp|Q99LG4|TTC5_MOUSE Tetratricopeptide repeat protein 5 (TPR repeat protein 5)
          Length = 440

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 107 EAEANLLETVQITFDKADAWAQFGHLKFIVGDEQAAESCFSRAL 238
           EAE  L + V++  +  +AW Q G + +  GD  +A +CFS AL
Sbjct: 87  EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 130
>sp|P16522|CDC23_YEAST Anaphase promoting complex subunit CDC23 (Cell division control
           protein 23)
          Length = 626

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 140 ITFDK--ADAWAQFGHLKFIVGDEQAAESCFSRALNLVDDIPEPHPVYMRLASIYLIQDK 313
           +T DK   +AW   GH    + +  AA  C+ RA   VD  P     +  L   Y + D 
Sbjct: 424 LTLDKKTTNAWTLMGHEFVELSNSHAAIECYRRA---VDICPRDFKAWFGLGQAYALLDM 480

Query: 314 YIEAKQAFLLACKNNP 361
           ++ +   F  AC   P
Sbjct: 481 HLYSLYYFQKACTLKP 496
>sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5 (TPR repeat protein 5)
          Length = 440

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 107 EAEANLLETVQITFDKADAWAQFGHLKFIVGDEQAAESCFSRAL 238
           +AE  L + V++  +  +AW Q G + +  GD  AA +CFS AL
Sbjct: 87  KAEELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTCFSGAL 130
>sp|O34327|RAPJ_BACSU Response regulator aspartate phosphatase J
          Length = 373

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = +2

Query: 35  IFNNLRAQYHLILAKMHLGMGAYEEAEANLLETVQITFDKADAWAQFGHLKFIVGDEQAA 214
           I  NL   YH   A  HL   A E A   L E   I    A A+   GH K+ +GD + A
Sbjct: 186 IAGNLTDVYHHEKALTHL-CSALEHAR-QLEEAYMI----AAAYYNVGHCKYSLGDYKEA 239

Query: 215 ESCFSRALNLVDD--IPEPHPVYMRLASIYLIQDKYIEAKQAF 337
           E  F  A  + ++    +       L  IY  + KY +A +A+
Sbjct: 240 EGYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAY 282
>sp|Q86TV6|TTC7B_HUMAN Tetratricopeptide repeat protein 7B (Tetratricopeptide repeat
           protein 7-like-1)
          Length = 741

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 92  MGAYEEAEANLLETVQITFDKADAWAQFGHLKFIVGDEQAAESCFSRALNLVDDIP 259
           +G Y  AE  L + VQ+     + W   G +    G++ AA  CF  AL L    P
Sbjct: 675 LGRYSLAEKILRDAVQVNSTAHEVWNGLGEVLQAQGNDAAATECFLTALELEASSP 730
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,354,820
Number of Sequences: 369166
Number of extensions: 1131859
Number of successful extensions: 2283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2283
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)