Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01771
(844 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VHE6|DYH5_MOUSE Ciliary dynein heavy chain 5 (Axonemal... 400 e-111
sp|Q8TE73|DYH5_HUMAN Ciliary dynein heavy chain 5 (Axonemal... 398 e-110
sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm 283 4e-76
sp|Q9SMH3|DYH1A_CHLRE Dynein 1-alpha heavy chain, flagellar... 200 5e-51
sp|Q9MBF8|DYH1B_CHLRE Dynein 1-beta heavy chain, flagellar ... 181 2e-45
sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm 171 3e-42
sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary 170 4e-42
sp|Q9NYC9|DYH9_HUMAN Ciliary dynein heavy chain 9 (Axonemal... 170 5e-42
sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary 168 2e-41
sp|Q96DT5|DYH11_HUMAN Ciliary dynein heavy chain 11 (Axonem... 150 6e-36
>sp|Q8VHE6|DYH5_MOUSE Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy chain 5)
(Mdnah5)
Length = 4621
Score = 400 bits (1028), Expect = e-111
Identities = 177/274 (64%), Positives = 226/274 (82%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTIEMLAKKHKVECRAISMGQGQEIHSRRLMSSFLVSGGWVLLQNC 181
TP++ LLSMGSDPT +I L K+ K+E R +SMGQGQE+H+R+L+ + +GGWVLLQNC
Sbjct: 4040 TPLICLLSMGSDPTDSIIALGKRLKIETRYVSMGQGQEVHARKLLHQTMANGGWVLLQNC 4099
Query: 182 HLSLNYMEELMDQIIETETIHDDFRLWVTTEIHPKFPISFLQMSIKFTNEPPQGIKAGIK 361
HL L++++ELMD + ETET+HD FRLW+TTE+H +FPI+ LQMSIKF NEPPQG++AG++
Sbjct: 4100 HLGLDFLDELMDVVTETETVHDTFRLWITTEVHKQFPITLLQMSIKFANEPPQGLRAGLR 4159
Query: 362 RTYTNFTQDFLDISNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNIPYEFNTADLNASLQ 541
RTY +QD LD+S QW+PM+YAVA+LH+ VQERRKFGPLGWNIPYEFN AD NA++Q
Sbjct: 4160 RTYGGVSQDLLDVSVGAQWKPMLYAVAFLHSTVQERRKFGPLGWNIPYEFNQADFNATVQ 4219
Query: 542 FVQNHLDDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDKRLLNTFCRRWFSDEMFNPKFR 721
F+QNHLDDMD+KKG+SW T+ YM+GEIQYGGRVTDDYDKRLLNTF + WFS+ MF P F
Sbjct: 4220 FIQNHLDDMDVKKGVSWTTVRYMIGEIQYGGRVTDDYDKRLLNTFAKVWFSENMFGPDFT 4279
Query: 722 FFKDHVIPTVTKLNDYIDLINELPNYDSPEMFGL 823
F++ + IP + ++ Y+ I LP YDSPE+FGL
Sbjct: 4280 FYQGYNIPKCSTVDGYLQYIQSLPAYDSPEVFGL 4313
>sp|Q8TE73|DYH5_HUMAN Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy chain 5)
(HL1)
Length = 4624
Score = 398 bits (1022), Expect = e-110
Identities = 178/274 (64%), Positives = 226/274 (82%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTIEMLAKKHKVECRAISMGQGQEIHSRRLMSSFLVSGGWVLLQNC 181
TP++ LLSMGSDPT +I L K+ K+E R +SMGQGQE+H+R+L+ + +GGW LLQNC
Sbjct: 4043 TPLICLLSMGSDPTDSIIALGKRLKIETRYVSMGQGQEVHARKLLQQTMANGGWALLQNC 4102
Query: 182 HLSLNYMEELMDQIIETETIHDDFRLWVTTEIHPKFPISFLQMSIKFTNEPPQGIKAGIK 361
HL L++M+ELMD IIETE +HD FRLW+TTE H +FPI+ LQMSIKF N+PPQG++AG+K
Sbjct: 4103 HLGLDFMDELMDIIIETELVHDAFRLWMTTEAHKQFPITLLQMSIKFANDPPQGLRAGLK 4162
Query: 362 RTYTNFTQDFLDISNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNIPYEFNTADLNASLQ 541
RTY+ +QD LD+S+ QW+PM+YAVA+LH+ VQERRKFG LGWNIPYEFN AD NA++Q
Sbjct: 4163 RTYSGVSQDLLDVSSGSQWKPMLYAVAFLHSTVQERRKFGALGWNIPYEFNQADFNATVQ 4222
Query: 542 FVQNHLDDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDKRLLNTFCRRWFSDEMFNPKFR 721
F+QNHLDDMD+KKG+SW TI YM+GEIQYGGRVTDDYDKRLLNTF + WFS+ MF P F
Sbjct: 4223 FIQNHLDDMDVKKGVSWTTIRYMIGEIQYGGRVTDDYDKRLLNTFAKVWFSENMFGPDFS 4282
Query: 722 FFKDHVIPTVTKLNDYIDLINELPNYDSPEMFGL 823
F++ + IP + +++Y+ I LP YDSPE+FGL
Sbjct: 4283 FYQGYNIPKCSTVDNYLQYIQSLPAYDSPEVFGL 4316
>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm
Length = 4485
Score = 283 bits (724), Expect = 4e-76
Identities = 133/283 (46%), Positives = 191/283 (67%), Gaps = 10/283 (3%)
Frame = +2
Query: 5 PMVGLLSMGSDPTPTIEMLAKKHKVECRAISMGQGQEIHSRRLMSSFLVSGGWVLLQNCH 184
P++ LLS G DPT IE LAKK K++ +SMGQGQE+ +R+ M++ + G WVLLQN H
Sbjct: 3890 PLICLLSPGPDPTKLIEDLAKKKKIKTLGVSMGQGQEVIARKHMAAASLEGHWVLLQNTH 3949
Query: 185 LSLNYMEELMDQIIETETIHDDFRLWVTTEIHPKFPISFLQMSIKFTNEPPQGIKAGIKR 364
L L Y+ E+ +++ E +H+DFRLW+T E HP+FPI LQM IK TNE P GIKAG++
Sbjct: 3950 LGLGYLTEVETFLVKEENVHEDFRLWITAEPHPQFPIGLLQMGIKITNEAPVGIKAGLRA 4009
Query: 365 TYTNFTQDFLDISNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNIPYEFNTADLNASLQF 544
+Y QD LD+ + +WR +++ + +LH+ VQE +FGP+GWN+PYEFN +DL+A +QF
Sbjct: 4010 SYQWVNQDMLDMVSRQEWRQLLFVMCFLHSVVQE-PQFGPIGWNVPYEFNQSDLSACVQF 4068
Query: 545 VQNHLDDMDIKKG--MSWKTICYMLGEIQYGGRVTDDYDKRLLNTFCRRWFSDEMFNPKF 718
+QNHL +MD KK +W+T+ YM+ IQYG R+TDD+DK L++TF ++F + P +
Sbjct: 4069 LQNHLSEMDAKKAPQPTWETVRYMISAIQYGSRITDDFDKLLMDTFAEKYFLQPVLQPSY 4128
Query: 719 RFFKD--------HVIPTVTKLNDYIDLINELPNYDSPEMFGL 823
FKD + +P T + + I LP +SPE+FGL
Sbjct: 4129 ELFKDTRSSDGFSYRVPDSTDIETFGSYIETLPGTESPEIFGL 4171
>sp|Q9SMH3|DYH1A_CHLRE Dynein 1-alpha heavy chain, flagellar inner arm I1 complex (1-alpha
DHC) (Dynein 1, subspecies f)
Length = 4625
Score = 200 bits (508), Expect = 5e-51
Identities = 104/291 (35%), Positives = 166/291 (57%), Gaps = 17/291 (5%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTI----EMLAKKHKVECRAISMGQGQEIHSRRLMSSFLVSGGWVL 169
TP+V +LS G+DP + E + + + + +++GQG ++ L+ + G W++
Sbjct: 4029 TPIVFVLSPGADPAFDVFKLGEEMGFRPGAKLKYMALGQGMGPKAQELIETGATRGLWIM 4088
Query: 170 LQNCHLSLNYMEELMDQIIETETIHDDFRLWVTTEIHPKFPISFLQMSIKFTNEPPQGIK 349
LQNCHL +++ L + + H DFRLW+TTE+ +FP+ LQ S+K EPP G+K
Sbjct: 4089 LQNCHLLPTWLKTLEKILEKITKPHADFRLWLTTELTDRFPLGVLQRSLKVVTEPPNGLK 4148
Query: 350 AGIKRTYTNFTQDFLDISNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNIPYEFNTADLN 529
++++Y+ T++ L +RP+VY + + H VQERRK+G LGWN+PY+FN D
Sbjct: 4149 LNMRQSYSKITEEVLADCPHQAFRPLVYVLGFFHAVVQERRKYGKLGWNVPYDFNETDFR 4208
Query: 530 ASLQFVQNHL-------DDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDKRLLNTFCRRW 688
S+ + +L DD+ + W T+ Y++GE YGGRV+D YD+R+L T+ +
Sbjct: 4209 ISMALISTYLTKAWDAQDDL-----IPWGTLRYLIGEAMYGGRVSDSYDRRILTTYLDEY 4263
Query: 689 FSDEMFN--PKFRFF--KDH--VIPTVTKLNDYIDLINELPNYDSPEMFGL 823
D +F+ FRF+ KD+ IP + Y+ + LP SPE FGL
Sbjct: 4264 LGDFLFDTFQPFRFYACKDYEIAIPQTGSRDTYLKAVEALPLVQSPEAFGL 4314
>sp|Q9MBF8|DYH1B_CHLRE Dynein 1-beta heavy chain, flagellar inner arm I1 complex (1-beta
DHC) (Dynein 1, subspecies f)
Length = 4513
Score = 181 bits (459), Expect = 2e-45
Identities = 98/282 (34%), Positives = 162/282 (57%), Gaps = 9/282 (3%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTIEMLAKKHKVECR--AISMGQGQEIHSRRLMSSFLVSGGWVLLQ 175
+P++ +LS G DPT + LA + + R +++GQGQ + RL+ L G WV L
Sbjct: 3921 SPLIFVLSAGVDPTDNLRKLATEKGMTSRFFTVALGQGQAPTATRLIEDGLREGNWVFLA 3980
Query: 176 NCHLSLNYMEELMDQIIE---TETIHDDFRLWVTTEIHPKFPISFLQMSIKFTNEPPQGI 346
NCHL +++ L D+IIE T+ H++FRLW+++ P FPI+ LQ IK T EPP+G+
Sbjct: 3981 NCHLMTSWLPTL-DKIIEGFETKQPHENFRLWLSSNPSPSFPIAILQRGIKMTTEPPKGL 4039
Query: 347 KAGIKRTYTNFTQ-DFLDISNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNIPYEFNTAD 523
+A + R Y + + + ++++ +++A+ Y H+ + ERRKF LG+NIPY+FN D
Sbjct: 4040 RANLLRLYNSVSDASYAQCKTQIKYQKLLFALTYFHSVLLERRKFRTLGFNIPYDFNDTD 4099
Query: 524 LNASLQFVQNHLDDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDKRLLNTFCRRWF-SDE 700
+ S ++++LD + W + Y++ E YGGRVTD+ D+R+L ++ +++ D
Sbjct: 4100 FSVSDDLLKSYLDSYE---QTPWDALKYLIAEANYGGRVTDELDRRVLASYLNKFYCEDA 4156
Query: 701 MFNPKFRF--FKDHVIPTVTKLNDYIDLINELPNYDSPEMFG 820
+ P + + +P L + D I LP D PE FG
Sbjct: 4157 LAVPGYLLSPLSTYYVPENGPLQSFKDYILTLPAGDRPEAFG 4198
>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm
Length = 4568
Score = 171 bits (432), Expect = 3e-42
Identities = 102/296 (34%), Positives = 167/296 (56%), Gaps = 22/296 (7%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTIEMLAKK-----HKVECRAISMGQGQEIHSRRLMSSFLVSGGWV 166
TP+ LS G D ++E L KK + ++S+GQGQE + +S+ +GGWV
Sbjct: 3968 TPIFVFLSPGVDVAGSVEALGKKLGFTLDNGKYASVSLGQGQEPIAMDRLSAAHKNGGWV 4027
Query: 167 LLQNCHLSLNYMEELMDQIIE--TETIHDDFRLWVTTEIHPKF----PISFLQMSIKFTN 328
LLQN HL++++ +D+ ++ E H DFRL+++ E P PIS LQ SIK TN
Sbjct: 4028 LLQNIHLTIDWTTNQLDKKVDKLVEGAHPDFRLFLSAEPPPSLERGLPISLLQNSIKLTN 4087
Query: 329 EPPQGIKAGIKRTYTNFTQDFLD-ISNMMQWRPMVYAVAYLHTCVQERRKFG-------- 481
EP +G+KA ++R + NF ++ L+ + ++R +V+A+ Y H + ER+KFG
Sbjct: 4088 EPARGLKANLRRAWNNFNEEILESCAKQAEFRAIVFALCYFHAALLERKKFGVGNLPGAR 4147
Query: 482 -PLGWNIPYEFNTADLNASLQFVQNHLDDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDK 658
+GWN+ Y FNT DL Q N+L++ ++K + W+ + Y GEI YGG + +DYD+
Sbjct: 4148 SGIGWNMNYPFNTGDLLCCGQTANNYLEN-NVK--VPWEDLRYNFGEIMYGGHIVEDYDR 4204
Query: 659 RLLNTFCRRWFSDEMFNPKFRFFKDHVIPTVT-KLNDYIDLINELPNYDSPEMFGL 823
RL + R++ ++ + + FF +P T ++ I+E+ ++P FGL
Sbjct: 4205 RLAMCYLRKYVNEGLLD-NMEFFPGFAMPPNTANHRQVLEFIDEVMPPETPLAFGL 4259
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary
Length = 4466
Score = 170 bits (431), Expect = 4e-42
Identities = 96/286 (33%), Positives = 152/286 (53%), Gaps = 12/286 (4%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTIEMLAKK-----HKVECRAISMGQGQEIHSRRLMSSFLVSGGWV 166
TP+ +LS G DP +E L KK +S+GQGQEI + + M G WV
Sbjct: 3877 TPVFFILSPGVDPLKDVEALGKKLGFTFDNNNFHNVSLGQGQEIVAEQCMDLAAKEGHWV 3936
Query: 167 LLQNCHLSLNYMEELMDQIIETET-IHDDFRLWVTTEIHPK-----FPISFLQMSIKFTN 328
+LQN HL ++ L ++ + HD +R++++ E P L+ SIK TN
Sbjct: 3937 ILQNIHLVAKWLSTLEKKLEQYSVGSHDSYRVYMSAEPAGSPEAHIIPQGILESSIKITN 3996
Query: 329 EPPQGIKAGIKRTYTNFTQDFLDI-SNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNIPY 505
EPP G+ A + + NF QD L++ + +++ +++A+ Y H V ER+KFGP GWN Y
Sbjct: 3997 EPPTGMFANLHKALYNFNQDTLEMCAREAEFKVILFALCYFHAVVCERQKFGPQGWNRSY 4056
Query: 506 EFNTADLNASLQFVQNHLDDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDKRLLNTFCRR 685
FNT DL S+ + N+L+ + W+ + Y+ GEI YGG +TDD+D+RL T+
Sbjct: 4057 PFNTGDLTISVNVLYNYLE---ANSKVPWQDLRYLFGEIMYGGHITDDWDRRLCRTYLEE 4113
Query: 686 WFSDEMFNPKFRFFKDHVIPTVTKLNDYIDLINELPNYDSPEMFGL 823
+ + EM + + +P + Y I+E+ +SP ++GL
Sbjct: 4114 YMAPEMLDGELYLAPGFPVPPNSDYKGYHQYIDEILPPESPYLYGL 4159
>sp|Q9NYC9|DYH9_HUMAN Ciliary dynein heavy chain 9 (Axonemal beta dynein heavy chain 9)
Length = 4486
Score = 170 bits (430), Expect = 5e-42
Identities = 101/287 (35%), Positives = 152/287 (52%), Gaps = 13/287 (4%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTIEMLAKK-----HKVECRAISMGQGQEIHSRRLMSSFLVSGGWV 166
TPM +LS G DP +E +K + +S+GQGQE+ + + G WV
Sbjct: 3897 TPMFFILSPGVDPLKDVESQGRKLGYTFNNQNFHNVSLGQGQEVVAEAALDLAAKKGHWV 3956
Query: 167 LLQNCHLSLNYMEELMDQIIE-TETIHDDFRLWVTTEIHPK-----FPISFLQMSIKFTN 328
+LQN HL ++ L ++ E +E H +FR++++ E P P L+ SIK TN
Sbjct: 3957 ILQNIHLVAKWLSTLEKKLEEHSENSHPEFRVFMSAEPAPSPEGHIIPQGILENSIKITN 4016
Query: 329 EPPQGIKAGIKRTYTNFTQDFLDI-SNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNIPY 505
EPP G+ A + + NFTQD L++ S +++ +++A+ Y H V ERRKFGP GWN Y
Sbjct: 4017 EPPTGMHANLHKALDNFTQDTLEMCSRETEFKSILFALCYFHAVVAERRKFGPQGWNRSY 4076
Query: 506 EFNTADLNASLQFVQNHLDDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDKRLLNTFCRR 685
FNT DL S+ + N L + + + + Y+ GEI YGG +TDD+D+RL T+
Sbjct: 4077 PFNTGDLTISVNVLYNFL---EANAKVPYDDLRYLFGEIMYGGHITDDWDRRLCRTYLGE 4133
Query: 686 WFSDEMFNPKFRFFKDHVIPTVTKLNDYIDLIN-ELPNYDSPEMFGL 823
+ EM + +P N Y I+ ELP +SP ++GL
Sbjct: 4134 FIRPEMLEGELSLAPGFPLPGNMDYNGYHQYIDAELPP-ESPYLYGL 4179
>sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary
Length = 4466
Score = 168 bits (426), Expect = 2e-41
Identities = 97/287 (33%), Positives = 154/287 (53%), Gaps = 13/287 (4%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTIEMLAKK-----HKVECRAISMGQGQEIHSRRLMSSFLVSGGWV 166
TP+ +LS G DP +E L KK +S+GQGQEI + + M G WV
Sbjct: 3877 TPVFFILSPGVDPLKDVEALGKKLGFTFDNNNFHNVSLGQGQEIVAEQCMDLAAKEGHWV 3936
Query: 167 LLQNCHLSLNYMEELMDQIIETETI--HDDFRLWVTTEIHPK-----FPISFLQMSIKFT 325
+LQN HL ++ L ++ +E +I H+ +R++++ E P L+ SIK T
Sbjct: 3937 ILQNIHLVAKWLSTL-EKKLEQYSIGSHESYRVYMSAEPAGSPESHIIPQGILESSIKIT 3995
Query: 326 NEPPQGIKAGIKRTYTNFTQDFLDI-SNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNIP 502
NEPP G+ A + + NF QD L++ + +++ +++A+ Y H V ER+KFGP GWN
Sbjct: 3996 NEPPTGMFANLHKALYNFNQDTLEMCAREAEFKVILFALCYFHAVVCERQKFGPQGWNRS 4055
Query: 503 YEFNTADLNASLQFVQNHLDDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDKRLLNTFCR 682
Y FNT DL S+ + N+L+ + W+ + Y+ GEI YGG +TDD+D+RL T+
Sbjct: 4056 YPFNTGDLTISVNVLYNYLE---ANSKVPWQDLRYLFGEIMYGGHITDDWDRRLCRTYLE 4112
Query: 683 RWFSDEMFNPKFRFFKDHVIPTVTKLNDYIDLINELPNYDSPEMFGL 823
+ + EM + +P + Y I+E+ +SP ++GL
Sbjct: 4113 EYMAPEMLDGDLYLAPGFPVPPNSDYKGYHQYIDEILPPESPYLYGL 4159
>sp|Q96DT5|DYH11_HUMAN Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy chain 11)
Length = 4523
Score = 150 bits (378), Expect = 6e-36
Identities = 88/288 (30%), Positives = 145/288 (50%), Gaps = 14/288 (4%)
Frame = +2
Query: 2 TPMVGLLSMGSDPTPTIEMLAKK-----HKVECRAISMGQGQEIHSRRLMSSFLVSGGWV 166
TP+ +LS G D +E+L K+ + +S+GQGQE + + G WV
Sbjct: 3934 TPIFFILSPGVDALKDLEILGKRLGFTIDSGKFHNVSLGQGQETVAEVALEKASKGGHWV 3993
Query: 167 LLQNCHLS---LNYMEELMDQIIETETIHDDFRLWVTTEIHPK-----FPISFLQMSIKF 322
+LQN HL L +E+L+++ ++ H D+R++++ E P P L+ SIK
Sbjct: 3994 ILQNVHLVAKWLGTLEKLLERF--SQGSHRDYRVFMSAESAPTPDEHIIPQGLLENSIKI 4051
Query: 323 TNEPPQGIKAGIKRTYTNFTQDFLDI-SNMMQWRPMVYAVAYLHTCVQERRKFGPLGWNI 499
TNEPP G+ A + NF QD L+I S +++ +++++ Y H CV R +FGP GW+
Sbjct: 4052 TNEPPTGMLANLHAALYNFDQDTLEICSKEQEFKSILFSLCYFHACVAGRLRFGPQGWSR 4111
Query: 500 PYEFNTADLNASLQFVQNHLDDMDIKKGMSWKTICYMLGEIQYGGRVTDDYDKRLLNTFC 679
Y FN DL + N+L+ + W+ + Y+ GEI YGG +TDD+D++L +
Sbjct: 4112 SYPFNPGDLTICASVLYNYLE---ANSKVPWEDLRYLFGEIMYGGHITDDWDRKLCRVYL 4168
Query: 680 RRWFSDEMFNPKFRFFKDHVIPTVTKLNDYIDLINELPNYDSPEMFGL 823
+ + + + P Y I E+ +SP ++GL
Sbjct: 4169 EEFVNPSLTEDELMLAPGFAAPPYLDYAGYHQYIEEMLPPESPALYGL 4216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,538,411
Number of Sequences: 369166
Number of extensions: 2355970
Number of successful extensions: 5429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5359
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)