Planaria EST Database


DrC_01768

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01768
         (550 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BYH7|TBC17_MOUSE  TBC1 domain family member 17                54   3e-07
sp|Q9HA65|TBC17_HUMAN  TBC1 domain family member 17                53   6e-07
sp|Q9CXF4|TBC15_MOUSE  TBC1 domain family member 15                47   3e-05
sp|Q8TC07|TBC15_HUMAN  TBC1 domain family member 15                45   1e-04
sp|Q8R3S6|EXOC1_MOUSE  Exocyst complex component 1 (Exocyst ...    30   3.9  
sp|O18998|DNAS1_RABIT  Deoxyribonuclease-1 precursor (Deoxyr...    30   3.9  
sp|Q9NV70|EXOC1_HUMAN  Exocyst complex component 1 (Exocyst ...    30   5.1  
sp|Q9LQ54|DRL12_ARATH  Probable disease resistance protein A...    29   6.6  
sp|P36304|POLR_KYMVJ  RNA replicase polyprotein                    29   8.6  
sp|Q9ZES2|TRPE_BUCTC  Anthranilate synthase component I            29   8.6  
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17
          Length = 645

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 34/124 (27%), Positives = 60/124 (48%)
 Frame = +3

Query: 168 SAKTVRPITIDLADLKSFKRSKMTVGNLNSYMIFFMRDGSSHPMMVFRDGGTKNLMDKLE 347
           S+++    ++ L +LKS +RSK   G   +Y++   + G S P + F  GGT+ L+  L 
Sbjct: 111 SSRSSWAFSVSLGELKSIRRSKP--GLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLS 168

Query: 348 NYLSITKSNKERFLFLTEPRREEAVFQSFESLGMFTNTKEIQASKYSQPASNAKAKIWSE 527
            YL +  S ++  L+L  P+   A+  SF  L +F        S++ Q   +     +S 
Sbjct: 169 RYLLLASSPQDSRLYLVFPQDPSALSDSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSR 228

Query: 528 MRRF 539
           +  F
Sbjct: 229 VTNF 232
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17
          Length = 648

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 33/116 (28%), Positives = 55/116 (47%)
 Frame = +3

Query: 192 TIDLADLKSFKRSKMTVGNLNSYMIFFMRDGSSHPMMVFRDGGTKNLMDKLENYLSITKS 371
           ++ L +LKS +RSK   G   +Y++   + G S P + F  GGT+ L+  L  YL +  S
Sbjct: 120 SVSLGELKSIRRSKP--GLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASS 177

Query: 372 NKERFLFLTEPRREEAVFQSFESLGMFTNTKEIQASKYSQPASNAKAKIWSEMRRF 539
            ++  L+L  P    A+  SF  L +F        S++ Q   +     +S +  F
Sbjct: 178 PQDSRLYLVFPHDSSALSNSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNF 233
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15
          Length = 671

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 37/130 (28%), Positives = 62/130 (47%)
 Frame = +3

Query: 54  YDKELDGTLSLIEHNFKRPNGKATNERYITWKPNIKVESAKTVRPITIDLADLKSFKRSK 233
           Y+ E D   ++        NG A   R           + K+       LADLKS K+SK
Sbjct: 94  YEAEWDMVTTVSFKKKPHTNGDAPGHR-----------NGKSKWSFLFSLADLKSVKQSK 142

Query: 234 MTVGNLNSYMIFFMRDGSSHPMMVFRDGGTKNLMDKLENYLSITKSNKERFLFLTEPRRE 413
             +G   SY++F ++D    P + F  G +K L++ LE Y+ + +S ++    L    + 
Sbjct: 143 EGMGW--SYLVFCLKDDVMLPALHFHQGDSKLLIESLEKYVVLCESPQDSRTLLVN-CQN 199

Query: 414 EAVFQSFESL 443
           +++ QSFE+L
Sbjct: 200 KSLSQSFENL 209
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15
          Length = 691

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 27/81 (33%), Positives = 49/81 (60%)
 Frame = +3

Query: 201 LADLKSFKRSKMTVGNLNSYMIFFMRDGSSHPMMVFRDGGTKNLMDKLENYLSITKSNKE 380
           L DLKS K++K  +G   SY++F ++D    P + F  G +K L++ LE Y+ + +S ++
Sbjct: 132 LTDLKSIKQNKEGMGW--SYLVFCLKDDVVLPALHFHQGDSKLLIESLEKYVVLCESPQD 189

Query: 381 RFLFLTEPRREEAVFQSFESL 443
           +   L    + +++ QSFE+L
Sbjct: 190 KRTLLVN-CQNKSLSQSFENL 209
>sp|Q8R3S6|EXOC1_MOUSE Exocyst complex component 1 (Exocyst complex component Sec3)
          Length = 894

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
 Frame = +3

Query: 312 DGGTKNLMDKLENY-------------LSITKSNKERFLFLTEPRREEAVFQSFESL 443
           +G TKN MD L                + +T ++KE   F T PR+E AV Q  ESL
Sbjct: 404 EGLTKNYMDYLSRLYEREIKDFFEVAKMKMTGTSKESKKFATLPRKESAVKQETESL 460
>sp|O18998|DNAS1_RABIT Deoxyribonuclease-1 precursor (Deoxyribonuclease I) (DNase I)
          Length = 281

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
 Frame = +3

Query: 207 DLKSFKRSKMTVGNLNSYMIFFMRDGSSHPMMVFRDG---GTKNLMDKLENYLSIT---- 365
           +++SF  +KM+   L SY++  ++      +   RD        L+DKL    + T    
Sbjct: 28  NIRSFGETKMSNATLTSYIVRILQRYDIALIQEVRDSHLTAVGKLLDKLNEKAADTYRFV 87

Query: 366 -------KSNKERFLFLTEPRREEAVFQSF------ESLGMFTNTKEIQASKYSQPASNA 506
                  ++ KER+LF+  P  + +V  S+      E  G  T ++E    ++S P++  
Sbjct: 88  ASEPLGRRTYKERYLFVYRP-DQVSVLDSYYYDDGCEPCGTDTFSREPAVVRFSSPSTKV 146

Query: 507 K 509
           +
Sbjct: 147 R 147
>sp|Q9NV70|EXOC1_HUMAN Exocyst complex component 1 (Exocyst complex component Sec3)
          Length = 894

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
 Frame = +3

Query: 312 DGGTKNLMDKLENY-------------LSITKSNKERFLFLTEPRREEAVFQSFESL 443
           +G TKN MD L                + +T + KE   F T PR+E AV Q  ESL
Sbjct: 404 EGLTKNYMDYLSRLYEREIKDFFEVAKIKMTGTTKESKKFATLPRKESAVKQETESL 460
>sp|Q9LQ54|DRL12_ARATH Probable disease resistance protein At1g59620 (CW9)
          Length = 695

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 214 FKSAKSIVIGRTVFADSTFILGFHVIYLSFVALPFGRLKLC 92
           + + KS ++G T F D      +H+++LSF  LP   LK C
Sbjct: 361 YGNIKSHIVGGTSFNDKNMSSVYHILHLSFEELPI-YLKHC 400
>sp|P36304|POLR_KYMVJ RNA replicase polyprotein
          Length = 1874

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 24   ILHFDNLSKDYDKELDGTLSLIEHNFKRPNGKATNERYITWKPNIKVESAKTV 182
            + H  NL  +     DG +S IE + +   G +  E++I     I +   KTV
Sbjct: 943  VQHAKNLISNMKNGFDGVMSTIEPSIRHQPGHSpreKFIALDAMIDLARPKTV 995
>sp|Q9ZES2|TRPE_BUCTC Anthranilate synthase component I
          Length = 526

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 342 LENYLSITKSNKERFLFLTEPRREEAVFQSFESLGMFTN-TKEIQASKYSQPASNAKAKI 518
           LE+Y+ + K+N   ++F  + R       S ES   F++ T++I+      P +  + + 
Sbjct: 291 LESYIFLKKNNPSPYMFFMQDRHFVLFGASPESSLKFSSITRKIEI----HPIAGTRPRA 346

Query: 519 WSEMRRFDIN 548
           +S +++ DIN
Sbjct: 347 FSSIKKIDIN 356
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,104,631
Number of Sequences: 369166
Number of extensions: 1011944
Number of successful extensions: 2645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2643
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)