Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01768
(550 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 54 3e-07
sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 53 6e-07
sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 47 3e-05
sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 45 1e-04
sp|Q8R3S6|EXOC1_MOUSE Exocyst complex component 1 (Exocyst ... 30 3.9
sp|O18998|DNAS1_RABIT Deoxyribonuclease-1 precursor (Deoxyr... 30 3.9
sp|Q9NV70|EXOC1_HUMAN Exocyst complex component 1 (Exocyst ... 30 5.1
sp|Q9LQ54|DRL12_ARATH Probable disease resistance protein A... 29 6.6
sp|P36304|POLR_KYMVJ RNA replicase polyprotein 29 8.6
sp|Q9ZES2|TRPE_BUCTC Anthranilate synthase component I 29 8.6
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17
Length = 645
Score = 53.5 bits (127), Expect = 3e-07
Identities = 34/124 (27%), Positives = 60/124 (48%)
Frame = +3
Query: 168 SAKTVRPITIDLADLKSFKRSKMTVGNLNSYMIFFMRDGSSHPMMVFRDGGTKNLMDKLE 347
S+++ ++ L +LKS +RSK G +Y++ + G S P + F GGT+ L+ L
Sbjct: 111 SSRSSWAFSVSLGELKSIRRSKP--GLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLS 168
Query: 348 NYLSITKSNKERFLFLTEPRREEAVFQSFESLGMFTNTKEIQASKYSQPASNAKAKIWSE 527
YL + S ++ L+L P+ A+ SF L +F S++ Q + +S
Sbjct: 169 RYLLLASSPQDSRLYLVFPQDPSALSDSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSR 228
Query: 528 MRRF 539
+ F
Sbjct: 229 VTNF 232
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17
Length = 648
Score = 52.8 bits (125), Expect = 6e-07
Identities = 33/116 (28%), Positives = 55/116 (47%)
Frame = +3
Query: 192 TIDLADLKSFKRSKMTVGNLNSYMIFFMRDGSSHPMMVFRDGGTKNLMDKLENYLSITKS 371
++ L +LKS +RSK G +Y++ + G S P + F GGT+ L+ L YL + S
Sbjct: 120 SVSLGELKSIRRSKP--GLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASS 177
Query: 372 NKERFLFLTEPRREEAVFQSFESLGMFTNTKEIQASKYSQPASNAKAKIWSEMRRF 539
++ L+L P A+ SF L +F S++ Q + +S + F
Sbjct: 178 PQDSRLYLVFPHDSSALSNSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNF 233
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15
Length = 671
Score = 47.0 bits (110), Expect = 3e-05
Identities = 37/130 (28%), Positives = 62/130 (47%)
Frame = +3
Query: 54 YDKELDGTLSLIEHNFKRPNGKATNERYITWKPNIKVESAKTVRPITIDLADLKSFKRSK 233
Y+ E D ++ NG A R + K+ LADLKS K+SK
Sbjct: 94 YEAEWDMVTTVSFKKKPHTNGDAPGHR-----------NGKSKWSFLFSLADLKSVKQSK 142
Query: 234 MTVGNLNSYMIFFMRDGSSHPMMVFRDGGTKNLMDKLENYLSITKSNKERFLFLTEPRRE 413
+G SY++F ++D P + F G +K L++ LE Y+ + +S ++ L +
Sbjct: 143 EGMGW--SYLVFCLKDDVMLPALHFHQGDSKLLIESLEKYVVLCESPQDSRTLLVN-CQN 199
Query: 414 EAVFQSFESL 443
+++ QSFE+L
Sbjct: 200 KSLSQSFENL 209
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15
Length = 691
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/81 (33%), Positives = 49/81 (60%)
Frame = +3
Query: 201 LADLKSFKRSKMTVGNLNSYMIFFMRDGSSHPMMVFRDGGTKNLMDKLENYLSITKSNKE 380
L DLKS K++K +G SY++F ++D P + F G +K L++ LE Y+ + +S ++
Sbjct: 132 LTDLKSIKQNKEGMGW--SYLVFCLKDDVVLPALHFHQGDSKLLIESLEKYVVLCESPQD 189
Query: 381 RFLFLTEPRREEAVFQSFESL 443
+ L + +++ QSFE+L
Sbjct: 190 KRTLLVN-CQNKSLSQSFENL 209
>sp|Q8R3S6|EXOC1_MOUSE Exocyst complex component 1 (Exocyst complex component Sec3)
Length = 894
Score = 30.0 bits (66), Expect = 3.9
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Frame = +3
Query: 312 DGGTKNLMDKLENY-------------LSITKSNKERFLFLTEPRREEAVFQSFESL 443
+G TKN MD L + +T ++KE F T PR+E AV Q ESL
Sbjct: 404 EGLTKNYMDYLSRLYEREIKDFFEVAKMKMTGTSKESKKFATLPRKESAVKQETESL 460
>sp|O18998|DNAS1_RABIT Deoxyribonuclease-1 precursor (Deoxyribonuclease I) (DNase I)
Length = 281
Score = 30.0 bits (66), Expect = 3.9
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Frame = +3
Query: 207 DLKSFKRSKMTVGNLNSYMIFFMRDGSSHPMMVFRDG---GTKNLMDKLENYLSIT---- 365
+++SF +KM+ L SY++ ++ + RD L+DKL + T
Sbjct: 28 NIRSFGETKMSNATLTSYIVRILQRYDIALIQEVRDSHLTAVGKLLDKLNEKAADTYRFV 87
Query: 366 -------KSNKERFLFLTEPRREEAVFQSF------ESLGMFTNTKEIQASKYSQPASNA 506
++ KER+LF+ P + +V S+ E G T ++E ++S P++
Sbjct: 88 ASEPLGRRTYKERYLFVYRP-DQVSVLDSYYYDDGCEPCGTDTFSREPAVVRFSSPSTKV 146
Query: 507 K 509
+
Sbjct: 147 R 147
>sp|Q9NV70|EXOC1_HUMAN Exocyst complex component 1 (Exocyst complex component Sec3)
Length = 894
Score = 29.6 bits (65), Expect = 5.1
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Frame = +3
Query: 312 DGGTKNLMDKLENY-------------LSITKSNKERFLFLTEPRREEAVFQSFESL 443
+G TKN MD L + +T + KE F T PR+E AV Q ESL
Sbjct: 404 EGLTKNYMDYLSRLYEREIKDFFEVAKIKMTGTTKESKKFATLPRKESAVKQETESL 460
>sp|Q9LQ54|DRL12_ARATH Probable disease resistance protein At1g59620 (CW9)
Length = 695
Score = 29.3 bits (64), Expect = 6.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 214 FKSAKSIVIGRTVFADSTFILGFHVIYLSFVALPFGRLKLC 92
+ + KS ++G T F D +H+++LSF LP LK C
Sbjct: 361 YGNIKSHIVGGTSFNDKNMSSVYHILHLSFEELPI-YLKHC 400
>sp|P36304|POLR_KYMVJ RNA replicase polyprotein
Length = 1874
Score = 28.9 bits (63), Expect = 8.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 24 ILHFDNLSKDYDKELDGTLSLIEHNFKRPNGKATNERYITWKPNIKVESAKTV 182
+ H NL + DG +S IE + + G + E++I I + KTV
Sbjct: 943 VQHAKNLISNMKNGFDGVMSTIEPSIRHQPGHSpreKFIALDAMIDLARPKTV 995
>sp|Q9ZES2|TRPE_BUCTC Anthranilate synthase component I
Length = 526
Score = 28.9 bits (63), Expect = 8.6
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 342 LENYLSITKSNKERFLFLTEPRREEAVFQSFESLGMFTN-TKEIQASKYSQPASNAKAKI 518
LE+Y+ + K+N ++F + R S ES F++ T++I+ P + + +
Sbjct: 291 LESYIFLKKNNPSPYMFFMQDRHFVLFGASPESSLKFSSITRKIEI----HPIAGTRPRA 346
Query: 519 WSEMRRFDIN 548
+S +++ DIN
Sbjct: 347 FSSIKKIDIN 356
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,104,631
Number of Sequences: 369166
Number of extensions: 1011944
Number of successful extensions: 2645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2643
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)