Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01764
(470 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D7P6|NIFUN_MOUSE NifU-like N-terminal domain containin... 221 6e-58
sp|Q9H1K1|NIFUN_HUMAN NifU-like N-terminal domain containin... 221 6e-58
sp|Q57074|NIFU_HAEIN NifU-like protein 209 3e-54
sp|Q6CFQ0|ISU1_YARLI Iron sulfur cluster assembly protein 1... 206 3e-53
sp|Q9ZD61|NIFU_RICPR NifU-like protein 204 6e-53
sp|P0ACD7|NIFU_SHIFL NifU-like protein >gi|82581701|sp|P0AC... 203 2e-52
sp|O51885|NIFU_BUCAP NifU-like protein 194 6e-50
sp|Q6CRQ9|ISU1_KLULA Iron sulfur cluster assembly protein 1... 194 8e-50
sp|Q89A18|NIFU_BUCBP NifU-like protein 194 1e-49
sp|P57658|NIFU_BUCAI NifU-like protein 191 5e-49
>sp|Q9D7P6|NIFUN_MOUSE NifU-like N-terminal domain containing protein, mitochondrial
precursor (NifU-like protein) (Iron-sulfur cluster
assembly enzyme ISCU)
Length = 168
Score = 221 bits (563), Expect = 6e-58
Identities = 107/126 (84%), Positives = 117/126 (92%)
Frame = +2
Query: 17 RFYHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKT 196
R YH+KV+DH+ENPRNVGSLDK KNVGTGLVGAPACGDVMKLQI+VDE GKI+DA+FKT
Sbjct: 34 RLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKT 93
Query: 197 FGCGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALAD 376
FGCGSAIASSSLATEWVKGK++ EA TIKNT+IAKEL LPPVKLHCSMLAEDAIKAALAD
Sbjct: 94 FGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALAD 153
Query: 377 YKKKND 394
YK K +
Sbjct: 154 YKLKQE 159
>sp|Q9H1K1|NIFUN_HUMAN NifU-like N-terminal domain containing protein, mitochondrial
precursor (NifU-like protein) (Iron-sulfur cluster
assembly enzyme ISCU)
Length = 167
Score = 221 bits (563), Expect = 6e-58
Identities = 107/126 (84%), Positives = 117/126 (92%)
Frame = +2
Query: 17 RFYHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKT 196
R YH+KV+DH+ENPRNVGSLDK KNVGTGLVGAPACGDVMKLQI+VDE GKI+DA+FKT
Sbjct: 33 RLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKT 92
Query: 197 FGCGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALAD 376
FGCGSAIASSSLATEWVKGK++ EA TIKNT+IAKEL LPPVKLHCSMLAEDAIKAALAD
Sbjct: 93 FGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALAD 152
Query: 377 YKKKND 394
YK K +
Sbjct: 153 YKLKQE 158
>sp|Q57074|NIFU_HAEIN NifU-like protein
Length = 126
Score = 209 bits (531), Expect = 3e-54
Identities = 100/122 (81%), Positives = 112/122 (91%)
Frame = +2
Query: 23 YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
Y EKV+DH+ENPRNVGSLDK D NVGTG+VGAPACGDVM+LQIKVD+NG I DAKFKT+G
Sbjct: 3 YSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKTYG 62
Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
CGSAIASSSL TEWVKGKSL EAG IKN++IA+EL LPPVK+HCS+LAEDAIKAA+ADYK
Sbjct: 63 CGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYK 122
Query: 383 KK 388
K
Sbjct: 123 AK 124
>sp|Q6CFQ0|ISU1_YARLI Iron sulfur cluster assembly protein 1, mitochondrial precursor
(Iron sulfur cluster scaffold protein 1)
Length = 181
Score = 206 bits (523), Expect = 3e-53
Identities = 100/127 (78%), Positives = 113/127 (88%)
Frame = +2
Query: 8 LTGRFYHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAK 187
++ R YHEKVLDH+ NPRNVGS++KND++VGTGLVGAPACGDVMKLQI+VD+NG I D K
Sbjct: 32 ISRRGYHEKVLDHYNNPRNVGSMNKNDEDVGTGLVGAPACGDVMKLQIRVDDNGVIQDVK 91
Query: 188 FKTFGCGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAA 367
FKTFGCGSAIASSS TE V+GKSL EAG IKNT IAKELSLPPVKLHCSMLAEDAIK+A
Sbjct: 92 FKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVIAKELSLPPVKLHCSMLAEDAIKSA 151
Query: 368 LADYKKK 388
++DY K
Sbjct: 152 ISDYNSK 158
>sp|Q9ZD61|NIFU_RICPR NifU-like protein
Length = 131
Score = 204 bits (520), Expect = 6e-53
Identities = 99/124 (79%), Positives = 112/124 (90%)
Frame = +2
Query: 23 YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
Y +KV+DH+ENPRNVGSLDK KNVGTGLVGAPACGDVMKLQI+V ++ I DAKFKTFG
Sbjct: 3 YSKKVIDHYENPRNVGSLDKKKKNVGTGLVGAPACGDVMKLQIEVGDDEIITDAKFKTFG 62
Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
CGSAIASSSL TEW+KGKS+ +A IKNTEIAKELSLPPVKLHCS+LAEDAIKAA+ADYK
Sbjct: 63 CGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYK 122
Query: 383 KKND 394
+K +
Sbjct: 123 QKRE 126
>sp|P0ACD7|NIFU_SHIFL NifU-like protein
sp|P0ACD4|NIFU_ECOLI NifU-like protein
sp|P0ACD5|NIFU_ECOL6 NifU-like protein
sp|P0ACD6|NIFU_ECO57 NifU-like protein
Length = 128
Score = 203 bits (516), Expect = 2e-52
Identities = 96/124 (77%), Positives = 111/124 (89%)
Frame = +2
Query: 23 YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
Y EKV+DH+ENPRNVGS D ND+NVG+G+VGAPACGDVMKLQIKV++ G I DA+FKT+G
Sbjct: 3 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 62
Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
CGSAIASSSL TEWVKGKSL EA IKNT+IA+EL LPPVK+HCS+LAEDAIKAA+ADYK
Sbjct: 63 CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYK 122
Query: 383 KKND 394
K +
Sbjct: 123 SKRE 126
>sp|O51885|NIFU_BUCAP NifU-like protein
Length = 128
Score = 194 bits (494), Expect = 6e-50
Identities = 92/125 (73%), Positives = 108/125 (86%)
Frame = +2
Query: 23 YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
Y +KV+DH+ENPRNVGS +D NVG+GLVGAPACGDVMKLQIKV+E G I DA FKT+G
Sbjct: 3 YSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQGIIEDACFKTYG 62
Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
CGSAIASSSL TEW+KGKS+TEA IKNT I +EL LPPVK+HCS+LAEDAIKAA++DYK
Sbjct: 63 CGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYK 122
Query: 383 KKNDE 397
K ++
Sbjct: 123 SKKNK 127
>sp|Q6CRQ9|ISU1_KLULA Iron sulfur cluster assembly protein 1, mitochondrial precursor
(Iron sulfur cluster scaffold protein 1)
Length = 180
Score = 194 bits (493), Expect = 8e-50
Identities = 98/127 (77%), Positives = 109/127 (85%), Gaps = 1/127 (0%)
Frame = +2
Query: 11 TGRFYHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKV-DENGKIIDAK 187
+ RFYH KV+DH+ NPRNVGSLDKN NVGTGLVGAPACGDVMKLQI+V DE G I + K
Sbjct: 47 SARFYHPKVIDHYTNPRNVGSLDKNLPNVGTGLVGAPACGDVMKLQIQVNDETGVIENVK 106
Query: 188 FKTFGCGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAA 367
FKTFGCGSAIASSS TE V+GK+L +A IKNTEIA+ELSLPPVKLHCSMLAEDAIKAA
Sbjct: 107 FKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAA 166
Query: 368 LADYKKK 388
+ DY+ K
Sbjct: 167 IKDYQAK 173
>sp|Q89A18|NIFU_BUCBP NifU-like protein
Length = 126
Score = 194 bits (492), Expect = 1e-49
Identities = 94/123 (76%), Positives = 106/123 (86%)
Frame = +2
Query: 23 YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
Y +KV+DH+ENPRNVGS D NVG+GLVGAPACGDVMKLQIKV++NG I DA FKT+G
Sbjct: 3 YSKKVIDHYENPRNVGSFKTIDANVGSGLVGAPACGDVMKLQIKVNKNGIIQDACFKTYG 62
Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
CGSAIASSSL TEW+KGKSL EA IKNT IA+EL LPPVK+HCS+LAEDAIKAA+ DYK
Sbjct: 63 CGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYK 122
Query: 383 KKN 391
KN
Sbjct: 123 NKN 125
>sp|P57658|NIFU_BUCAI NifU-like protein
Length = 127
Score = 191 bits (486), Expect = 5e-49
Identities = 92/122 (75%), Positives = 106/122 (86%)
Frame = +2
Query: 23 YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
Y +KV+DH+ENPRNVGS D NVG+GLVGAPACGDVMKLQIKV+E G I DA FKT+G
Sbjct: 3 YSKKVMDHYENPRNVGSFSSTDLNVGSGLVGAPACGDVMKLQIKVNEKGIIEDACFKTYG 62
Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
CGSAIASSSL TEWVKGKS+ EA +IKNT I +EL LPPVK+HCS+LAEDAIKAA++DYK
Sbjct: 63 CGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYK 122
Query: 383 KK 388
+K
Sbjct: 123 RK 124
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,183,545
Number of Sequences: 369166
Number of extensions: 855515
Number of successful extensions: 2546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2495
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)