Planaria EST Database


DrC_01764

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01764
         (470 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D7P6|NIFUN_MOUSE  NifU-like N-terminal domain containin...   221   6e-58
sp|Q9H1K1|NIFUN_HUMAN  NifU-like N-terminal domain containin...   221   6e-58
sp|Q57074|NIFU_HAEIN  NifU-like protein                           209   3e-54
sp|Q6CFQ0|ISU1_YARLI  Iron sulfur cluster assembly protein 1...   206   3e-53
sp|Q9ZD61|NIFU_RICPR  NifU-like protein                           204   6e-53
sp|P0ACD7|NIFU_SHIFL  NifU-like protein >gi|82581701|sp|P0AC...   203   2e-52
sp|O51885|NIFU_BUCAP  NifU-like protein                           194   6e-50
sp|Q6CRQ9|ISU1_KLULA  Iron sulfur cluster assembly protein 1...   194   8e-50
sp|Q89A18|NIFU_BUCBP  NifU-like protein                           194   1e-49
sp|P57658|NIFU_BUCAI  NifU-like protein                           191   5e-49
>sp|Q9D7P6|NIFUN_MOUSE NifU-like N-terminal domain containing protein, mitochondrial
           precursor (NifU-like protein) (Iron-sulfur cluster
           assembly enzyme ISCU)
          Length = 168

 Score =  221 bits (563), Expect = 6e-58
 Identities = 107/126 (84%), Positives = 117/126 (92%)
 Frame = +2

Query: 17  RFYHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKT 196
           R YH+KV+DH+ENPRNVGSLDK  KNVGTGLVGAPACGDVMKLQI+VDE GKI+DA+FKT
Sbjct: 34  RLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKT 93

Query: 197 FGCGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALAD 376
           FGCGSAIASSSLATEWVKGK++ EA TIKNT+IAKEL LPPVKLHCSMLAEDAIKAALAD
Sbjct: 94  FGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALAD 153

Query: 377 YKKKND 394
           YK K +
Sbjct: 154 YKLKQE 159
>sp|Q9H1K1|NIFUN_HUMAN NifU-like N-terminal domain containing protein, mitochondrial
           precursor (NifU-like protein) (Iron-sulfur cluster
           assembly enzyme ISCU)
          Length = 167

 Score =  221 bits (563), Expect = 6e-58
 Identities = 107/126 (84%), Positives = 117/126 (92%)
 Frame = +2

Query: 17  RFYHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKT 196
           R YH+KV+DH+ENPRNVGSLDK  KNVGTGLVGAPACGDVMKLQI+VDE GKI+DA+FKT
Sbjct: 33  RLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKT 92

Query: 197 FGCGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALAD 376
           FGCGSAIASSSLATEWVKGK++ EA TIKNT+IAKEL LPPVKLHCSMLAEDAIKAALAD
Sbjct: 93  FGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALAD 152

Query: 377 YKKKND 394
           YK K +
Sbjct: 153 YKLKQE 158
>sp|Q57074|NIFU_HAEIN NifU-like protein
          Length = 126

 Score =  209 bits (531), Expect = 3e-54
 Identities = 100/122 (81%), Positives = 112/122 (91%)
 Frame = +2

Query: 23  YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
           Y EKV+DH+ENPRNVGSLDK D NVGTG+VGAPACGDVM+LQIKVD+NG I DAKFKT+G
Sbjct: 3   YSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKTYG 62

Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
           CGSAIASSSL TEWVKGKSL EAG IKN++IA+EL LPPVK+HCS+LAEDAIKAA+ADYK
Sbjct: 63  CGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYK 122

Query: 383 KK 388
            K
Sbjct: 123 AK 124
>sp|Q6CFQ0|ISU1_YARLI Iron sulfur cluster assembly protein 1, mitochondrial precursor
           (Iron sulfur cluster scaffold protein 1)
          Length = 181

 Score =  206 bits (523), Expect = 3e-53
 Identities = 100/127 (78%), Positives = 113/127 (88%)
 Frame = +2

Query: 8   LTGRFYHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAK 187
           ++ R YHEKVLDH+ NPRNVGS++KND++VGTGLVGAPACGDVMKLQI+VD+NG I D K
Sbjct: 32  ISRRGYHEKVLDHYNNPRNVGSMNKNDEDVGTGLVGAPACGDVMKLQIRVDDNGVIQDVK 91

Query: 188 FKTFGCGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAA 367
           FKTFGCGSAIASSS  TE V+GKSL EAG IKNT IAKELSLPPVKLHCSMLAEDAIK+A
Sbjct: 92  FKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVIAKELSLPPVKLHCSMLAEDAIKSA 151

Query: 368 LADYKKK 388
           ++DY  K
Sbjct: 152 ISDYNSK 158
>sp|Q9ZD61|NIFU_RICPR NifU-like protein
          Length = 131

 Score =  204 bits (520), Expect = 6e-53
 Identities = 99/124 (79%), Positives = 112/124 (90%)
 Frame = +2

Query: 23  YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
           Y +KV+DH+ENPRNVGSLDK  KNVGTGLVGAPACGDVMKLQI+V ++  I DAKFKTFG
Sbjct: 3   YSKKVIDHYENPRNVGSLDKKKKNVGTGLVGAPACGDVMKLQIEVGDDEIITDAKFKTFG 62

Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
           CGSAIASSSL TEW+KGKS+ +A  IKNTEIAKELSLPPVKLHCS+LAEDAIKAA+ADYK
Sbjct: 63  CGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYK 122

Query: 383 KKND 394
           +K +
Sbjct: 123 QKRE 126
>sp|P0ACD7|NIFU_SHIFL NifU-like protein
 sp|P0ACD4|NIFU_ECOLI NifU-like protein
 sp|P0ACD5|NIFU_ECOL6 NifU-like protein
 sp|P0ACD6|NIFU_ECO57 NifU-like protein
          Length = 128

 Score =  203 bits (516), Expect = 2e-52
 Identities = 96/124 (77%), Positives = 111/124 (89%)
 Frame = +2

Query: 23  YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
           Y EKV+DH+ENPRNVGS D ND+NVG+G+VGAPACGDVMKLQIKV++ G I DA+FKT+G
Sbjct: 3   YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 62

Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
           CGSAIASSSL TEWVKGKSL EA  IKNT+IA+EL LPPVK+HCS+LAEDAIKAA+ADYK
Sbjct: 63  CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYK 122

Query: 383 KKND 394
            K +
Sbjct: 123 SKRE 126
>sp|O51885|NIFU_BUCAP NifU-like protein
          Length = 128

 Score =  194 bits (494), Expect = 6e-50
 Identities = 92/125 (73%), Positives = 108/125 (86%)
 Frame = +2

Query: 23  YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
           Y +KV+DH+ENPRNVGS   +D NVG+GLVGAPACGDVMKLQIKV+E G I DA FKT+G
Sbjct: 3   YSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQGIIEDACFKTYG 62

Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
           CGSAIASSSL TEW+KGKS+TEA  IKNT I +EL LPPVK+HCS+LAEDAIKAA++DYK
Sbjct: 63  CGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYK 122

Query: 383 KKNDE 397
            K ++
Sbjct: 123 SKKNK 127
>sp|Q6CRQ9|ISU1_KLULA Iron sulfur cluster assembly protein 1, mitochondrial precursor
           (Iron sulfur cluster scaffold protein 1)
          Length = 180

 Score =  194 bits (493), Expect = 8e-50
 Identities = 98/127 (77%), Positives = 109/127 (85%), Gaps = 1/127 (0%)
 Frame = +2

Query: 11  TGRFYHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKV-DENGKIIDAK 187
           + RFYH KV+DH+ NPRNVGSLDKN  NVGTGLVGAPACGDVMKLQI+V DE G I + K
Sbjct: 47  SARFYHPKVIDHYTNPRNVGSLDKNLPNVGTGLVGAPACGDVMKLQIQVNDETGVIENVK 106

Query: 188 FKTFGCGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAA 367
           FKTFGCGSAIASSS  TE V+GK+L +A  IKNTEIA+ELSLPPVKLHCSMLAEDAIKAA
Sbjct: 107 FKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAA 166

Query: 368 LADYKKK 388
           + DY+ K
Sbjct: 167 IKDYQAK 173
>sp|Q89A18|NIFU_BUCBP NifU-like protein
          Length = 126

 Score =  194 bits (492), Expect = 1e-49
 Identities = 94/123 (76%), Positives = 106/123 (86%)
 Frame = +2

Query: 23  YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
           Y +KV+DH+ENPRNVGS    D NVG+GLVGAPACGDVMKLQIKV++NG I DA FKT+G
Sbjct: 3   YSKKVIDHYENPRNVGSFKTIDANVGSGLVGAPACGDVMKLQIKVNKNGIIQDACFKTYG 62

Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
           CGSAIASSSL TEW+KGKSL EA  IKNT IA+EL LPPVK+HCS+LAEDAIKAA+ DYK
Sbjct: 63  CGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYK 122

Query: 383 KKN 391
            KN
Sbjct: 123 NKN 125
>sp|P57658|NIFU_BUCAI NifU-like protein
          Length = 127

 Score =  191 bits (486), Expect = 5e-49
 Identities = 92/122 (75%), Positives = 106/122 (86%)
 Frame = +2

Query: 23  YHEKVLDHFENPRNVGSLDKNDKNVGTGLVGAPACGDVMKLQIKVDENGKIIDAKFKTFG 202
           Y +KV+DH+ENPRNVGS    D NVG+GLVGAPACGDVMKLQIKV+E G I DA FKT+G
Sbjct: 3   YSKKVMDHYENPRNVGSFSSTDLNVGSGLVGAPACGDVMKLQIKVNEKGIIEDACFKTYG 62

Query: 203 CGSAIASSSLATEWVKGKSLTEAGTIKNTEIAKELSLPPVKLHCSMLAEDAIKAALADYK 382
           CGSAIASSSL TEWVKGKS+ EA +IKNT I +EL LPPVK+HCS+LAEDAIKAA++DYK
Sbjct: 63  CGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYK 122

Query: 383 KK 388
           +K
Sbjct: 123 RK 124
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,183,545
Number of Sequences: 369166
Number of extensions: 855515
Number of successful extensions: 2546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2495
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)