Planaria EST Database


DrC_01761

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01761
         (697 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92398|SPM1_SCHPO  Mitogen-activated protein kinase spm1 ...    32   2.1  
sp|P54445|PSIE_BACSU  Protein psiE homolog                         31   2.7  
sp|P29030|CHIT_BRUMA  Endochitinase precursor (MF1 antigen)        30   6.1  
sp|Q8DVF6|TRPD_STRMU  Anthranilate phosphoribosyltransferase       30   8.0  
>sp|Q92398|SPM1_SCHPO Mitogen-activated protein kinase spm1 (MAP kinase spm1) (MAP kinase
           pmk1)
          Length = 422

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = +1

Query: 37  WDTELNIKNNFIEIVQKLGWRGILDLLCVRKTTGSKDYLPITKKELFNAFSK 192
           ++ E+ ++ NF ++V++LG +G   ++C  +   SKD   +  K++ N FSK
Sbjct: 11  FNQEMYVEPNF-KVVKELG-QGAYGIVCAARNVASKDQEAVAIKKITNVFSK 60
>sp|P54445|PSIE_BACSU Protein psiE homolog
          Length = 139

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -2

Query: 543 NSCLSKGIKN*SMLIFVLPAFLFLWFYKT--NKIDW*VQPPGSITKFVAYFNYLSLTW*L 370
           N CLS      S L+     ++ L+ YK+  NK+D   +  G +  F  YF +++L   +
Sbjct: 20  NVCLSFLALALSALLISETWYIVLFVYKSLFNKVDSYYEMLGELLIFFMYFEFIAL---I 76

Query: 369 VNIYPNSFFYYLSYFC*RAITFI 301
           +  + + F + L YF    IT +
Sbjct: 77  IKYFKSDFHFPLRYFIYIGITAV 99
>sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen)
          Length = 504

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 172 LFNAFSKKYEKSKNLTVGGIAWTKHCNRDISSKWWGTPIGTEENKSNCALAKVTEIIEEA 351
           +F   +K  +K++      IA+ +  N D     W  P+G  E  +    A  T  +EEA
Sbjct: 113 IFTGIAKSAQKTERFIKSAIAFLRKNNFDGFDLDWEYPVGVAEEHAKLVEAMKTAFVEEA 172
>sp|Q8DVF6|TRPD_STRMU Anthranilate phosphoribosyltransferase
          Length = 335

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +1

Query: 214 LTVGGIAWTKHCNRDISSKWWGTPIGTEENKSNCALA--KVTEIIEEA--VWINIHQL-P 378
           L  GGI   KH NR ISSK  G+    EE   N  LA  K+ ++++E   V++   ++ P
Sbjct: 98  LAAGGIHIAKHGNRSISSK-SGSADVLEELGINVVLAPEKLAQVLDETGIVFLFAQKMHP 156

Query: 379 GQREIIEIRHKLG 417
             R I   R  LG
Sbjct: 157 AMRYISPARQALG 169
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,214,470
Number of Sequences: 369166
Number of extensions: 1601316
Number of successful extensions: 4170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4167
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)