Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01761
(697 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q92398|SPM1_SCHPO Mitogen-activated protein kinase spm1 ... 32 2.1
sp|P54445|PSIE_BACSU Protein psiE homolog 31 2.7
sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen) 30 6.1
sp|Q8DVF6|TRPD_STRMU Anthranilate phosphoribosyltransferase 30 8.0
>sp|Q92398|SPM1_SCHPO Mitogen-activated protein kinase spm1 (MAP kinase spm1) (MAP kinase
pmk1)
Length = 422
Score = 31.6 bits (70), Expect = 2.1
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = +1
Query: 37 WDTELNIKNNFIEIVQKLGWRGILDLLCVRKTTGSKDYLPITKKELFNAFSK 192
++ E+ ++ NF ++V++LG +G ++C + SKD + K++ N FSK
Sbjct: 11 FNQEMYVEPNF-KVVKELG-QGAYGIVCAARNVASKDQEAVAIKKITNVFSK 60
>sp|P54445|PSIE_BACSU Protein psiE homolog
Length = 139
Score = 31.2 bits (69), Expect = 2.7
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -2
Query: 543 NSCLSKGIKN*SMLIFVLPAFLFLWFYKT--NKIDW*VQPPGSITKFVAYFNYLSLTW*L 370
N CLS S L+ ++ L+ YK+ NK+D + G + F YF +++L +
Sbjct: 20 NVCLSFLALALSALLISETWYIVLFVYKSLFNKVDSYYEMLGELLIFFMYFEFIAL---I 76
Query: 369 VNIYPNSFFYYLSYFC*RAITFI 301
+ + + F + L YF IT +
Sbjct: 77 IKYFKSDFHFPLRYFIYIGITAV 99
>sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen)
Length = 504
Score = 30.0 bits (66), Expect = 6.1
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 172 LFNAFSKKYEKSKNLTVGGIAWTKHCNRDISSKWWGTPIGTEENKSNCALAKVTEIIEEA 351
+F +K +K++ IA+ + N D W P+G E + A T +EEA
Sbjct: 113 IFTGIAKSAQKTERFIKSAIAFLRKNNFDGFDLDWEYPVGVAEEHAKLVEAMKTAFVEEA 172
>sp|Q8DVF6|TRPD_STRMU Anthranilate phosphoribosyltransferase
Length = 335
Score = 29.6 bits (65), Expect = 8.0
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 214 LTVGGIAWTKHCNRDISSKWWGTPIGTEENKSNCALA--KVTEIIEEA--VWINIHQL-P 378
L GGI KH NR ISSK G+ EE N LA K+ ++++E V++ ++ P
Sbjct: 98 LAAGGIHIAKHGNRSISSK-SGSADVLEELGINVVLAPEKLAQVLDETGIVFLFAQKMHP 156
Query: 379 GQREIIEIRHKLG 417
R I R LG
Sbjct: 157 AMRYISPARQALG 169
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,214,470
Number of Sequences: 369166
Number of extensions: 1601316
Number of successful extensions: 4170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4167
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)