Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01731
(776 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28478|V70K_TYMVC 69 kDa protein 35 0.23
sp|P06600|PRP33_DAUCA Proline-rich 33 kDa extensin-related ... 34 0.39
sp|Q06841|NO75_LUPLU Early nodulin 75 protein (N-75) (NGM-75) 33 1.1
sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2 33 1.1
sp|O60885|BRD4_HUMAN Bromodomain-containing protein 4 (HUNK... 32 1.5
sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall prot... 32 1.5
sp|Q69ZL1|FGD6_MOUSE FYVE, RhoGEF and PH domain containing ... 32 1.5
sp|P10233|UL49_HHV11 Tegument protein UL49 32 1.9
sp|O42569|SOX2_XENLA Transcription factor SOX-2 (XLSOX-2) 32 1.9
sp|P13993|PRP2_SOYBN Repetitive proline-rich cell wall prot... 32 2.5
>sp|P28478|V70K_TYMVC 69 kDa protein
Length = 628
Score = 35.0 bits (79), Expect = 0.23
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 11/146 (7%)
Frame = +1
Query: 1 PSSAGTINSYKPLCTPTKSHLTTNM-HQKTTPRALDQNSIVVQPTMRKQXXXXXXXXXXX 177
P SA S++P+ P H+ + H PR S +QPT+R+
Sbjct: 172 PRSATRGPSFRPILLPKVVHVHDDPPHSSLRPRG--SRSRQLQPTVRRPLLAPNQF---- 225
Query: 178 XXXXXXXXXHKPKLNAPPISQKP--VNARPMLNNGNQRNPPPPIAK--------RPINNV 327
H P+ PP+S P + RP+ N + PP PI RP++ +
Sbjct: 226 ---------HSPR-QPPPLSDDPGILGPRPLAPNSTRDPPPRPITPGPSNTHGLRPLSVL 275
Query: 328 PVPHQRKPRTENQQTHNSRRSNNEHI 405
P R+ N + H R++ HI
Sbjct: 276 PRASPRRGLLPNPRRH---RTSTGHI 298
>sp|P06600|PRP33_DAUCA Proline-rich 33 kDa extensin-related protein precursor
Length = 211
Score = 34.3 bits (77), Expect = 0.39
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 205 HKPK-LNAPPISQKPVNARPMLNNGNQRNPPPPIAKRPINNVPVPHQRKP 351
HKP+ ++ PP+ + P +P ++ + P P+ + P PVP + P
Sbjct: 129 HKPQPIHRPPVHKPPTEHKPPVHEPATEHKPSPVYQPPKTEKPVPEHKPP 178
Score = 33.5 bits (75), Expect = 0.66
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 19/85 (22%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNPP----------------PPIAKRPINNVPVP 336
HKP + PP+ + PV P+ ++ PP PP+ K P+
Sbjct: 38 HKPPVYTPPVHKPPVYTPPVHKPPSEYKPPVEATNSVTEDHYPIHKPPVYKPPVQKPAPE 97
Query: 337 HQ---RKPRTENQQTHNSRRSNNEH 402
H+ KP HN+ ++H
Sbjct: 98 HKPPVHKPPIHKPPVHNTPSVTDDH 122
Score = 32.3 bits (72), Expect = 1.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNPPPPIAKRPINNVPV---PHQRKPRTE 360
HKP + PP+ + P++ P+ PP+ K P+ PV P + KP E
Sbjct: 23 HKPPVYTPPVHKPPIHKPPVYT--------PPVHKPPVYTPPVHKPPSEYKPPVE 69
>sp|Q06841|NO75_LUPLU Early nodulin 75 protein (N-75) (NGM-75)
Length = 434
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 208 KPKLNAPPISQKPVNARPMLNNGNQRNPP--PPIAKRPINNVPVPHQRKPRTE 360
KP + PP +KP P+ +R+PP PP ++P P PH++ P E
Sbjct: 242 KPPIEYPPPHEKP----PVYEPPYERSPPVHPPSHEKPPFVYPPPHEKSPMHE 290
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP----PPPIAKRPINNVPVPHQRKP 351
H P PPI P + +P ++ P PPP K PI P PH++ P
Sbjct: 107 HPPPHEKPPIEYSPPHEKPPVHEPPYEKPPLVHPPPHDKPPIEYHP-PHEKPP 158
Score = 31.6 bits (70), Expect = 2.5
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNPPPPIAKRPINNVPVPHQRKP 351
H P PPI P + +P + PPP K PI P PH++ P
Sbjct: 42 HPPPHEKPPIEYPPPHTKPPIEY------PPPHVKPPI-QYPPPHEKPP 83
Score = 31.2 bits (69), Expect = 3.3
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNPPPPIAKRPINNVPVPHQRKP 351
H P + PPI P + +P + PPP K PI P PH++ P
Sbjct: 139 HPPPHDKPPIEYHPPHEKPPIEY------PPPHEKPPI-EYPPPHEKPP 180
Score = 31.2 bits (69), Expect = 3.3
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNPP---PPIAKRPINNVPVPHQRKP 351
H P PPI P +P ++ PP PP +P P PH++ P
Sbjct: 204 HPPPDEKPPIEYPPPLEKPPVHEPPYEKPPPAQPPPHDKPPIEYPPPHEKPP 255
Score = 30.0 bits (66), Expect = 7.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNPPPPIAKRPINNVPVPHQRKP 351
+ P PPI P + +P + PPP K PI P+PH++ P
Sbjct: 53 YPPPHTKPPIEYPPPHVKPPIQY------PPPHEKPPIE-YPLPHEKPP 94
>sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2
Length = 798
Score = 32.7 bits (73), Expect = 1.1
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = +1
Query: 268 NNGNQRNPPPPIAKRPINNVPVPHQRKPRTENQQTHNSRRSNNEHIIQV*MIFAKQSSTY 447
N Q P K+P+NN P + N Q+ N ++ NN + + QS+T
Sbjct: 65 NQKQQTTQNKPANKKPMNNKPGEQRNNQNRPNNQSTNGQQRNNNNQNR-----HGQSNTQ 119
Query: 448 HKSCQSYHRISTRNNHN 498
++S Q+ RN N
Sbjct: 120 NRSNQTNTNNQNRNTQN 136
>sp|O60885|BRD4_HUMAN Bromodomain-containing protein 4 (HUNK1 protein)
Length = 1362
Score = 32.3 bits (72), Expect = 1.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = +1
Query: 211 PKLNAPPISQ-----KPVNARPMLNNGNQRNPPPPIAKRPIN-----NVPVPHQRKPRTE 360
P+ PP Q +PV+ +PM + + + PPPP ++P + P P KP+
Sbjct: 980 PQPQPPPQQQHQPPPRPVHLQPMQFSTHIQQPPPPQGQQPPHPPPGQQPPPPQPAKPQQV 1039
Query: 361 NQQTHNSRRSNNE 399
Q H+ R ++
Sbjct: 1040 IQHHHSPRHHKSD 1052
>sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall protein 2 precursor
Length = 371
Score = 32.3 bits (72), Expect = 1.5
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PPI + PV P+ ++ P PP+ K PI PV P KP E
Sbjct: 225 YKPPVEKPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPIYKPPVEKPPVYKPPVE 280
Score = 32.0 bits (71), Expect = 1.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PPI + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 255 YKPPVEKPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 310
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 35 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 90
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 65 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 120
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 95 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 150
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 125 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 180
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 155 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 210
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 185 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPIYKPPVE 240
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 215 YKPPVEKPPVYKPPVEKPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPIYKPPVE 270
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 305 YKPPVEKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVYKPPVE 360
Score = 30.0 bits (66), Expect = 7.4
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV 333
+KP + PP+ + PV P+ ++ P PP+ K P+ PV
Sbjct: 285 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVYKPPV 329
>sp|Q69ZL1|FGD6_MOUSE FYVE, RhoGEF and PH domain containing protein 6
Length = 1399
Score = 32.3 bits (72), Expect = 1.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 220 NAPPISQKPVNARPMLNNGNQRNPPPPIAKRP-INNVPVPHQRK 348
+A + + P+ +P L N + PPPPIA +P I + VP K
Sbjct: 3 SAAELKKPPLAPKPKLVGTNNKPPPPPIAPKPDIGSASVPRLTK 46
>sp|P10233|UL49_HHV11 Tegument protein UL49
Length = 301
Score = 32.0 bits (71), Expect = 1.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 229 PISQKPVNARPMLNNGNQRNPPPPIAKRPINNVPVPHQRKPRTENQQT 372
P +++PV+ + G R PPPP P R PRT+ T
Sbjct: 82 PRTRRPVSGAVLSGPGPARAPPPPAGSGGAGRTPTTAPRAPRTQRVAT 129
>sp|O42569|SOX2_XENLA Transcription factor SOX-2 (XLSOX-2)
Length = 311
Score = 32.0 bits (71), Expect = 1.9
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +1
Query: 226 PPISQKPVNARPMLNNGNQRNPPPPIAKRPINNVPV---PHQRKPRTENQQTHNSRRS 390
PP Q+P + NQ P KRP+N V +RK EN + HNS S
Sbjct: 11 PPAPQQPSGGNSNSASNNQNKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEIS 68
>sp|P13993|PRP2_SOYBN Repetitive proline-rich cell wall protein 2 precursor
Length = 230
Score = 31.6 bits (70), Expect = 2.5
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNPP---PPIAKRPINNVPV--PHQRKPRTE 360
+KP PP+ + PV +P + NPP PP+ K P+ PV P KP E
Sbjct: 30 YKPPTEKPPVYKPPVE-KPPVYKPPVENPPIYKPPVEKPPVYKPPVEKPPVYKPPVE 85
Score = 31.6 bits (70), Expect = 2.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PPI + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 50 YKPPVENPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 105
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 80 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 135
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 110 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 165
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 140 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 195
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV--PHQRKPRTE 360
+KP + PP+ + PV P+ ++ P PP+ K P+ PV P KP E
Sbjct: 40 YKPPVEKPPVYKPPVENPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVE 95
Score = 31.2 bits (69), Expect = 3.3
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 205 HKPKLNAPPISQKPVNARPMLNNGNQRNP--PPPIAKRPINNVPV---PHQRKPRTEN 363
+KP + PP+ + PV P+ ++ P PP+ K P+ P P+ + P T++
Sbjct: 170 YKPPVEKPPVYKPPVEKPPVYKPPVEKPPIYKPPVEKPPVYKPPYGKPPYPKYPPTDD 227
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,497,325
Number of Sequences: 369166
Number of extensions: 1562348
Number of successful extensions: 4772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4612
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)