Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01730
(710 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 32 1.3
sp|P21301|NUCM_TRYBB NADH-ubiquinone oxidoreductase 49 kDa ... 31 2.8
sp|P75083|Y031_MYCPN Hypothetical protein MG028 homolog (B0... 30 4.9
sp|Q24332|NT56_DROVI Lethal(2)neighbour of Tid protein (NOT58) 30 8.3
sp|P03881|YXT1_YEAST Hypothetical protein B-386 (ORF1) 30 8.3
>sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1
Length = 326
Score = 32.3 bits (72), Expect = 1.3
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +2
Query: 365 HKFALVKIHIPKETLNNN*LQYKDR*NIFKDNNKITTLKNQNRKS*YILYSRKNRKIDML 544
+K L+K + K +NNN + + N+ NNK+ ++ N N S + KN +++M+
Sbjct: 14 NKNMLLKNMLLKMNINNNNMNTNNN-NMKYMNNKLQSINNMNNWSLQMYNYNKNNELNMM 72
Query: 545 ENIP*I-KSLYKIIML*FTKNLYAEINQSH 631
+ + K LYK++ + N+ +N +
Sbjct: 73 MMMNMMNKLLYKLMNMIMINNMTMNVNNKN 102
>sp|P21301|NUCM_TRYBB NADH-ubiquinone oxidoreductase 49 kDa subunit homolog (NADH
dehydrogenase subunit 7 homolog)
Length = 386
Score = 31.2 bits (69), Expect = 2.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -1
Query: 575 CKEILFMGCFQ---ACLFSYFFLNIICTMIFYFDFSKWLFYCCL 453
CK+ F+G F CLF Y + +I I +S W CCL
Sbjct: 275 CKQCFFVGFFVFGFVCLFDYLYCDITIETIIMLFYSLWC--CCL 316
>sp|P75083|Y031_MYCPN Hypothetical protein MG028 homolog (B01_orf203)
Length = 203
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 536 LFSYFFLNIICTMIFYFDFSKWLFYCCL*IYFTYPYIVINYYSVFLWEYVF*PMRICDSI 357
LF FL I+ IFYF KW YPY ++ + W Y+ +I
Sbjct: 43 LFLTPFLGIVAASIFYFFDVKWFL-------ADYPYKKFHFQKKWTWTYLSGVFVFFANI 95
Query: 356 VINIEL 339
++N+ L
Sbjct: 96 LVNVIL 101
>sp|Q24332|NT56_DROVI Lethal(2)neighbour of Tid protein (NOT58)
Length = 526
Score = 29.6 bits (65), Expect = 8.3
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -1
Query: 569 EILFMGCFQACLFSYF---FLNIICTMIFYFDFSKWLFYCCL*IYFTYPY-IVINYYSVF 402
+I F C Q L +F F+ + C ++ F W F+ + ++ PY + + Y +
Sbjct: 400 DIYFEPCTQLALLPFFLCNFIGVACARSLHYQFYIWYFHSLPYLVWSTPYSLGVRYLILG 459
Query: 401 LWEY 390
+ EY
Sbjct: 460 IIEY 463
>sp|P03881|YXT1_YEAST Hypothetical protein B-386 (ORF1)
Length = 386
Score = 29.6 bits (65), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 476 KWLFYCCL*IYFTYPYIVINYYSVFLWE 393
KWL+ + I+ YP + I YYS + W+
Sbjct: 66 KWLYSNIVTIFDKYPCLTIKYYSYYKWK 93
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,690,254
Number of Sequences: 369166
Number of extensions: 970453
Number of successful extensions: 2122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2120
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)