Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01729
(263 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34858|NU4LM_ANOGA NADH-ubiquinone oxidoreductase chain ... 32 0.34
sp|P33512|NU4LM_ANOQU NADH-ubiquinone oxidoreductase chain ... 30 1.7
>sp|P34858|NU4LM_ANOGA NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
4L)
Length = 99
Score = 32.3 bits (72), Expect = 0.34
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -1
Query: 227 HHLLTLLSFRYVPRHILTYFKFL*FFVNYSNFCTFM*YYIVIIKIC 90
H L TLLS Y+ +L+ F FL F++N+ N+ T+ + + +C
Sbjct: 28 HLLSTLLSLEYM---VLSLFIFLFFYLNFMNYETYFSMFFLTFCVC 70
>sp|P33512|NU4LM_ANOQU NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
4L)
Length = 99
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 227 HHLLTLLSFRYVPRHILTYFKFL*FFVNYSNFCTFM*YYIVIIKIC 90
H L TLLS Y+ +L+ F FL F++N+ N+ + + + +C
Sbjct: 28 HLLSTLLSLEYM---VLSLFIFLFFYLNFMNYEMYFSMFFLTFCVC 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,659,451
Number of Sequences: 369166
Number of extensions: 476514
Number of successful extensions: 978
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)