Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01727
(680 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dors... 98 2e-20
sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) ... 95 1e-19
sp|P09429|HMG1_HUMAN High mobility group protein 1 (HMG-1) ... 95 1e-19
sp|P17741|HMG2_PIG High mobility group protein 2 (HMG-2) 95 1e-19
sp|P63159|HMG1_RAT High mobility group protein 1 (HMG-1) (H... 95 1e-19
sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2) 95 1e-19
sp|P12682|HMG1_PIG High mobility group protein 1 (HMG-1) (H... 95 1e-19
sp|P26584|HMG2_CHICK High mobility group protein 2 (HMG-2) 94 3e-19
sp|P30681|HMG2_MOUSE High mobility group protein 2 (HMG-2) 94 3e-19
sp|P52925|HMG2_RAT High mobility group protein 2 (HMG-2) 94 3e-19
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dorsal switch protein 1)
Length = 393
Score = 98.2 bits (243), Expect = 2e-20
Identities = 45/77 (58%), Positives = 53/77 (68%)
Frame = +2
Query: 446 KEKPRPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEM 625
K +P+G M+ Y YFVQ REEHK KHP E V+F+EFS+KCAE+ K M KEKKRF EM
Sbjct: 174 KADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEM 233
Query: 626 APSDKDRFNREMNTYQP 676
A DK R+ EM Y P
Sbjct: 234 AEKDKQRYEAEMQNYVP 250
>sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 95.1 bits (235), Expect = 1e-19
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y +FVQ REEHK KHP V FSEFSKKC+E+ K M+ KEK +FE+MA +D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 638 KDRFNREMNTYQP 676
K R+ REM TY P
Sbjct: 68 KARYEREMKTYIP 80
>sp|P09429|HMG1_HUMAN High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
sp|Q6YKA4|HMG1_CANFA High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 95.1 bits (235), Expect = 1e-19
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y +FVQ REEHK KHP V FSEFSKKC+E+ K M+ KEK +FE+MA +D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 638 KDRFNREMNTYQP 676
K R+ REM TY P
Sbjct: 68 KARYEREMKTYIP 80
>sp|P17741|HMG2_PIG High mobility group protein 2 (HMG-2)
Length = 210
Score = 95.1 bits (235), Expect = 1e-19
Identities = 43/73 (58%), Positives = 54/73 (73%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y +FVQ REEHK KHP V F+EFSKKC+E+ K M+ KEK +FE+MA SD
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD 67
Query: 638 KDRFNREMNTYQP 676
K R++REM Y P
Sbjct: 68 KARYDREMKNYVP 80
>sp|P63159|HMG1_RAT High mobility group protein 1 (HMG-1) (High mobility group protein
B1) (Amphoterin) (Heparin-binding protein p30)
sp|P63158|HMG1_MOUSE High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 95.1 bits (235), Expect = 1e-19
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y +FVQ REEHK KHP V FSEFSKKC+E+ K M+ KEK +FE+MA +D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 638 KDRFNREMNTYQP 676
K R+ REM TY P
Sbjct: 68 KARYEREMKTYIP 80
>sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2)
Length = 209
Score = 95.1 bits (235), Expect = 1e-19
Identities = 43/73 (58%), Positives = 54/73 (73%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y +FVQ REEHK KHP V F+EFSKKC+E+ K M+ KEK +FE+MA SD
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD 67
Query: 638 KDRFNREMNTYQP 676
K R++REM Y P
Sbjct: 68 KARYDREMKNYVP 80
>sp|P12682|HMG1_PIG High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 95.1 bits (235), Expect = 1e-19
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y +FVQ REEHK KHP V FSEFSKKC+E+ K M+ KEK +FE+MA +D
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 638 KDRFNREMNTYQP 676
K R+ REM TY P
Sbjct: 68 KARYEREMKTYIP 80
>sp|P26584|HMG2_CHICK High mobility group protein 2 (HMG-2)
Length = 207
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/73 (58%), Positives = 53/73 (72%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y YFVQ REEHK KHP V F+EFS+KC+E+ K M+ KEK +FEEMA D
Sbjct: 8 KPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGD 67
Query: 638 KDRFNREMNTYQP 676
K R++REM Y P
Sbjct: 68 KARYDREMKNYVP 80
>sp|P30681|HMG2_MOUSE High mobility group protein 2 (HMG-2)
Length = 210
Score = 94.0 bits (232), Expect = 3e-19
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y +FVQ REEHK KHP V F+EFSKKC+E+ K M+ KEK +FE++A SD
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSD 67
Query: 638 KDRFNREMNTYQP 676
K R++REM Y P
Sbjct: 68 KARYDREMKNYVP 80
>sp|P52925|HMG2_RAT High mobility group protein 2 (HMG-2)
Length = 210
Score = 94.0 bits (232), Expect = 3e-19
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = +2
Query: 458 RPKGPMSPYPYFVQVIREEHKPKHPGEQVVFSEFSKKCAEK*KLMTPKEKKRFEEMAPSD 637
+P+G MS Y +FVQ REEHK KHP V F+EFSKKC+E+ K M+ KEK +FE++A SD
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSD 67
Query: 638 KDRFNREMNTYQP 676
K R++REM Y P
Sbjct: 68 KARYDREMKNYVP 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,322,104
Number of Sequences: 369166
Number of extensions: 1394126
Number of successful extensions: 3251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3245
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)