Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01721
(640 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ERG2|STRN3_MOUSE Striatin-3 (Cell-cycle autoantigen SG... 124 3e-28
sp|P58404|STRN4_MOUSE Striatin-4 (Zinedin) 122 1e-27
sp|Q9NRL3|STRN4_HUMAN Striatin-4 (Zinedin) 120 2e-27
sp|Q13033|STRN3_HUMAN Striatin-3 (Cell-cycle autoantigen SG... 120 2e-27
sp|O55106|STRN_MOUSE Striatin 116 6e-26
sp|P70483|STRN_RAT Striatin 114 2e-25
sp|O43815|STRN_HUMAN Striatin 112 8e-25
sp|P58405|STRN3_RAT Striatin-3 (Cell-cycle autoantigen SG2N... 83 5e-16
sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124 58 2e-08
sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein H... 53 6e-07
>sp|Q9ERG2|STRN3_MOUSE Striatin-3 (Cell-cycle autoantigen SG2NA) (S/G2 antigen)
Length = 796
Score = 124 bits (310), Expect = 3e-28
Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 1/190 (0%)
Frame = +2
Query: 29 DNYCSSFGLGDLASITVTNDAD-GENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSK 205
D S GLGDLA +TVTNDAD +L A+K ++ +
Sbjct: 432 DVLLSVLGLGDLADLTVTNDADYSYDLPANK-------------------------DAFR 466
Query: 206 KFWNVKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQ 385
K WN KYTLR HFD VR+L+F+ E +++ S+D T+K+WN K +KK ++++E +
Sbjct: 467 KTWNPKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIY 526
Query: 386 TMRGHDGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALN 565
T R H GPVLS+ + ++ SGG+D +++W +P+ +DPY+ Y+S A
Sbjct: 527 TFRAHIGPVLSLAI------SSNGEQCFSGGIDATIQWWNMPSPNVDPYDTYESNVLAGT 580
Query: 566 ISGAHSSAIW 595
+ AH+ A+W
Sbjct: 581 LV-AHTDAVW 589
Score = 31.2 bits (69), Expect = 2.3
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 227 TLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWN 328
TL H D+V L++ ++ ++S S DGT+++WN
Sbjct: 580 TLVAHTDAVWGLAYSGIKNQLLSCSADGTIRLWN 613
Score = 30.8 bits (68), Expect = 3.1
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 224 YTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFN 334
+++ H D+V SL+ N ++SGS D ++++WN +
Sbjct: 716 HSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLD 752
>sp|P58404|STRN4_MOUSE Striatin-4 (Zinedin)
Length = 760
Score = 122 bits (305), Expect = 1e-27
Identities = 66/181 (36%), Positives = 101/181 (55%)
Frame = +2
Query: 53 LGDLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNVKYTL 232
LGDLA +TVTND D L D DS ++ KK WN K+TL
Sbjct: 406 LGDLADLTVTNDND--------------------LSCDLSDSK----DAFKKTWNPKFTL 441
Query: 233 RGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHDGPV 412
R H+D +RSL+F+ ++SA+++ S+DGT+K+WN KA +KK +++E + R H GPV
Sbjct: 442 RSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAHRGPV 501
Query: 413 LSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALNISGAHSSAI 592
L+V + +++ SGG D + W +P+L +DPY+ YD + + + G H A+
Sbjct: 502 LAVTM------GSNSEYCYSGGADARIHSWKIPDLNMDPYDGYDPSVLSHVLEG-HGDAV 554
Query: 593 W 595
W
Sbjct: 555 W 555
Score = 33.5 bits (75), Expect = 0.47
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 218 VKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWN 328
+ + L GH D+V L+F + S S DGTV++W+
Sbjct: 543 LSHVLEGHGDAVWGLAFSPTSQRLASCSADGTVRIWD 579
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Frame = +2
Query: 2 SLALQNNEMDNYCSSFGLGDLA-------SITVTNDADGENLDASKSFCTSNPQQQISL- 157
S+A + E + +SF GD S +T ++ G + A + S+P Q +++
Sbjct: 602 SVAFTSTEPAHVVASFRSGDTVLYDLEAGSALLTLESRGSSGPAQINQVVSHPSQPLTIT 661
Query: 158 GKDKVDSSVIETNSSKKFWNVKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFN 334
D ++ + K +++ H D+V L+ N ++SGS D ++++W+ +
Sbjct: 662 AHDDRGIRFLDNRTGKSV----HSMVAHLDAVTCLAVDPNGVFLMSGSHDCSLRLWSLD 716
>sp|Q9NRL3|STRN4_HUMAN Striatin-4 (Zinedin)
Length = 753
Score = 120 bits (302), Expect = 2e-27
Identities = 66/181 (36%), Positives = 101/181 (55%)
Frame = +2
Query: 53 LGDLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNVKYTL 232
LGDLA +TVTND D L D DS ++ KK WN K+TL
Sbjct: 399 LGDLADLTVTNDND--------------------LSCDLSDSK----DAFKKTWNPKFTL 434
Query: 233 RGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHDGPV 412
R H+D +RSL+F+ ++SA+++ S+DGT+K+WN KA +KK +++E + R H GPV
Sbjct: 435 RSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAHRGPV 494
Query: 413 LSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALNISGAHSSAI 592
L+V + +++ SGG D + W +P+L +DPY+ YD + + + G H A+
Sbjct: 495 LAVAM------GSNSEYCYSGGADACIHSWKIPDLSMDPYDGYDPSVLSHVLEG-HGDAV 547
Query: 593 W 595
W
Sbjct: 548 W 548
Score = 33.5 bits (75), Expect = 0.47
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 218 VKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWN 328
+ + L GH D+V L+F + S S DGTV++W+
Sbjct: 536 LSHVLEGHGDAVWGLAFSPTSQRLASCSADGTVRIWD 572
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Frame = +2
Query: 2 SLALQNNEMDNYCSSFGLGD-------LASITVTNDADGENLDASKSFCTSNPQQQISL- 157
S+A + E + +SF GD + S +T ++ G + + S+P Q +++
Sbjct: 595 SVAFTSTEPAHIVASFRSGDTVLYDMEVGSALLTLESRGSSGPTQINQVVSHPNQPLTIT 654
Query: 158 GKDKVDSSVIETNSSKKFWNVKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFN 334
D ++ + K +++ H D+V L+ N + ++SGS D ++++W+ +
Sbjct: 655 AHDDRGIRFLDNRTGKPV----HSMVAHLDAVTCLAVDPNGAFLMSGSHDCSLRLWSLD 709
>sp|Q13033|STRN3_HUMAN Striatin-3 (Cell-cycle autoantigen SG2NA) (S/G2 antigen)
Length = 797
Score = 120 bits (302), Expect = 2e-27
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 1/190 (0%)
Frame = +2
Query: 29 DNYCSSFGLGDLASITVTNDAD-GENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSK 205
D S GLGDLA +TVTNDAD +L A+K ++ +
Sbjct: 433 DVLLSVLGLGDLADLTVTNDADYSYDLPANK-------------------------DAFR 467
Query: 206 KFWNVKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQ 385
K W+ KYTLR HFD VR+L+F+ E +++ S+D T+K+WN K +KK ++++E +
Sbjct: 468 KTWSPKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIY 527
Query: 386 TMRGHDGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALN 565
T R H GPVLS+ + ++ SGG+D +++W +P+ +DPY+ Y+ A
Sbjct: 528 TFRAHIGPVLSLAI------SSNGEQCFSGGIDATIQWWNMPSPSVDPYDTYEPNVLAGT 581
Query: 566 ISGAHSSAIW 595
+ G H+ A+W
Sbjct: 582 LVG-HTDAVW 590
Score = 33.9 bits (76), Expect = 0.36
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 227 TLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWN 328
TL GH D+V L++ ++ ++S S DGTV++WN
Sbjct: 581 TLVGHTDAVWGLAYSGIKNQLLSCSADGTVRLWN 614
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = +2
Query: 224 YTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHD 403
+++ H D+V SL+ N ++SGS D ++++WN + VQ + H
Sbjct: 717 HSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDSK-----------TCVQEITAH- 764
Query: 404 GPVLSVRVLDEDLFLNSAHLASSG 475
L + D + A++AS+G
Sbjct: 765 RKKLDESIYDVAFHSSKAYIASAG 788
>sp|O55106|STRN_MOUSE Striatin
Length = 780
Score = 116 bits (290), Expect = 6e-26
Identities = 64/185 (34%), Positives = 98/185 (52%)
Frame = +2
Query: 41 SSFGLGDLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNV 220
S GLG+LA +TV N+AD D I+ KD + +K WN
Sbjct: 419 SELGLGELAGLTVANEADSLAYD-------------IANNKDAL----------RKTWNP 455
Query: 221 KYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGH 400
K+TLR HFD +R+L+F+ E +I+ S+D T+K+WN K +KK ++++E + T R H
Sbjct: 456 KFTLRSHFDGIRALAFHPIEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAH 515
Query: 401 DGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALNISGAH 580
GPVL V + ++ SGG DG ++ W+ N +DPY+ YD + + G H
Sbjct: 516 KGPVLCV------VMSSNGEQCYSGGTDGRIQSWSTTNPNVDPYDAYDPSVLRGPLLG-H 568
Query: 581 SSAIW 595
+ A+W
Sbjct: 569 TDAVW 573
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = +2
Query: 128 TSNPQQQISLGKDKVDSSVIETNSSKKFWN------VKYTLRGHFDSVRSLSFYKNESAI 289
+SN +Q S G D S TN + ++ ++ L GH D+V L++ +
Sbjct: 525 SSNGEQCYSGGTDGRIQSWSTTNPNVDPYDAYDPSVLRGPLLGHTDAVWGLAYSAAHQRL 584
Query: 290 ISGSDDGTVKVWN 328
+S S DGT+++WN
Sbjct: 585 LSCSADGTLRLWN 597
>sp|P70483|STRN_RAT Striatin
Length = 780
Score = 114 bits (286), Expect = 2e-25
Identities = 64/185 (34%), Positives = 98/185 (52%)
Frame = +2
Query: 41 SSFGLGDLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNV 220
S GLG+LA +TV N+AD D I+ KD + +K WN
Sbjct: 419 SELGLGELAGLTVANEADSLAYD-------------IANNKDAL----------RKTWNP 455
Query: 221 KYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGH 400
K+TLR HFD +R+L+F+ E +I+ S+D T+K+WN K +KK ++++E + T R H
Sbjct: 456 KFTLRSHFDGIRALAFHPIEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAH 515
Query: 401 DGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALNISGAH 580
GPVL V + ++ SGG DG ++ W+ N +DPY+ YD + + G H
Sbjct: 516 KGPVLCV------VMSSNGEQCYSGGTDGLIQSWSTTNPNVDPYDSYDPSVLRGPLLG-H 568
Query: 581 SSAIW 595
+ A+W
Sbjct: 569 TDAVW 573
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +2
Query: 128 TSNPQQQISLGKDKVDSSVIETNSSKKFWN------VKYTLRGHFDSVRSLSFYKNESAI 289
+SN +Q S G D + S TN + ++ ++ L GH D+V L++ +
Sbjct: 525 SSNGEQCYSGGTDGLIQSWSTTNPNVDPYDSYDPSVLRGPLLGHTDAVWGLAYSAAHQRL 584
Query: 290 ISGSDDGTVKVW 325
+S S DGT+++W
Sbjct: 585 LSCSADGTLRLW 596
>sp|O43815|STRN_HUMAN Striatin
Length = 780
Score = 112 bits (280), Expect = 8e-25
Identities = 64/185 (34%), Positives = 96/185 (51%)
Frame = +2
Query: 41 SSFGLGDLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNV 220
S G G+LA +TV N+AD D I+ KD + +K WN
Sbjct: 419 SELGPGELAGLTVANEADSLTYD-------------IANNKDAL----------RKTWNP 455
Query: 221 KYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGH 400
K+TLR HFD +R+L+F+ E +I+ S+D T+K+WN K +KK ++++E + T R H
Sbjct: 456 KFTLRSHFDGIRALAFHPIEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAH 515
Query: 401 DGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALNISGAH 580
GPVL V + ++ SGG DG ++ W N IDPY+ YD + + G H
Sbjct: 516 KGPVLCV------VMSSNGEQCYSGGTDGLIQGWNTTNPNIDPYDSYDPSVLRGPLLG-H 568
Query: 581 SSAIW 595
+ A+W
Sbjct: 569 TDAVW 573
Score = 31.2 bits (69), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 230 LRGHFDSVRSLSFYKNESAIISGSDDGTVKVWN 328
L GH D+V L++ ++S S DGT+++WN
Sbjct: 565 LLGHTDAVWGLAYSAAHQRLLSCSADGTLRLWN 597
>sp|P58405|STRN3_RAT Striatin-3 (Cell-cycle autoantigen SG2NA) (S/G2 antigen)
Length = 461
Score = 83.2 bits (204), Expect = 5e-16
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +2
Query: 29 DNYCSSFGLGDLASITVTNDAD-GENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSK 205
D S GLGDLA +TVTNDA +L A+K ++ +
Sbjct: 362 DVLLSVLGLGDLADLTVTNDAXYSYDLPANK-------------------------DALR 396
Query: 206 KFWNVKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQ 385
K WN KYTLR HFD VR+L+F+ E +++ S+D T+K+WN K +KK ++++E +
Sbjct: 397 KTWNPKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIY 456
Query: 386 TMRGH 400
T R H
Sbjct: 457 TFRAH 461
>sp|Q8YV57|Y2124_ANASP Hypothetical WD-repeat protein all2124
Length = 1683
Score = 57.8 bits (138), Expect = 2e-08
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Frame = +2
Query: 149 ISLGKDKVDSSVIETNSSKKFWNVK-----YTLRGHFDSVRSLSFYKNESAIISGSDDGT 313
+S D + + + K W + TL+GH DSV ++F + AI S S D T
Sbjct: 1245 LSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNT 1304
Query: 314 VKVWNFNKAQLSKKGPNMEIEAVQTMRGHDGPVLSVRVLDEDLFLNSAHLASSGGLDGNL 493
+K+WN + +L +T GH G V +V FL +++ +S LD +
Sbjct: 1305 IKLWNRHGIEL------------ETFTGHSGGVYAVN------FLPDSNIIASASLDNTI 1346
Query: 494 RFWTLPNLEIDPYELYDSAQNALNISGAHSSAI 592
R W P I P E+ +S H +I
Sbjct: 1347 RLWQRP--LISPLEVLAGNSGVYAVSFLHDGSI 1377
Score = 41.6 bits (96), Expect = 0.002
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%)
Frame = +2
Query: 62 LASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWN----VKYT 229
LA++T A E + ++ + IS+ +D + + + K W+ + T
Sbjct: 1049 LATVTTLQQALFEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRT 1108
Query: 230 LRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHDGP 409
L GH D+V S+SF + I SG D T+K+W + L K T+ GH+
Sbjct: 1109 LNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK-----------TITGHEQT 1157
Query: 410 VLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALNISGAHSSA 589
V +V F +S D +++ W S Q + ++G HS+
Sbjct: 1158 VNNV------YFSPDGKNLASASSDHSIKLWDT-----------TSGQLLMTLTG-HSAG 1199
Query: 590 IWTVDCLP 613
+ TV P
Sbjct: 1200 VITVRFSP 1207
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Frame = +2
Query: 134 NPQQQISLGKDKVDSSVIETNSSKKFWNV-----KYTLRGHFDSVRSLSFYKNESAIISG 298
N +++ D + +++ K WNV K TL+GH D V +SF + I S
Sbjct: 1447 NEVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSPDGKIIASA 1506
Query: 299 SDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHDGPVLSVRVLDEDLFLNSAH 460
S D T+++W+ L K P DG +L+ D+ + L +H
Sbjct: 1507 SADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSH 1560
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Frame = +2
Query: 182 VIETNSSK--KFWNVK-----YTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKA 340
+ N+ K K W V+ TL GH + V ++F + + S S D TVK+WN +
Sbjct: 1419 IASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDG 1478
Query: 341 QLSKKGPNMEIEAVQTMRGHDGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFW 502
+ K T++GH V V F + +S D +R W
Sbjct: 1479 KFKK-----------TLKGHTDEVFWVS------FSPDGKIIASASADKTIRLW 1515
Score = 37.7 bits (86), Expect = 0.025
Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 36/188 (19%)
Frame = +2
Query: 158 GKDKVDSSVIETNSSKKFWNVK-----YTLRGHFDSVRSLSFYKNESAIISGSDDGTVKV 322
GK+ +S ++ S K W+ TL GH V ++ F + I +GS+D TVK+
Sbjct: 1167 GKNLASAS---SDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKL 1223
Query: 323 WN----------------FNKAQLSKKGPNM---------------EIEAVQTMRGHDGP 409
W+ N S G + + + V+T++GH+
Sbjct: 1224 WHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDS 1283
Query: 410 VLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTLPNLEIDPYELYDSAQNALNISGAHSSA 589
V V F + +S D ++ W +E++ + HS
Sbjct: 1284 VWDVN------FSSDGKAIASASRDNTIKLWNRHGIELETFT-------------GHSGG 1324
Query: 590 IWTVDCLP 613
++ V+ LP
Sbjct: 1325 VYAVNFLP 1332
Score = 36.6 bits (83), Expect = 0.056
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Frame = +2
Query: 173 DSSVIETNSSKK---FW-----NVKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWN 328
D S++ + S+ K W ++ +T GH + V S SF + I S S+D TVK+W
Sbjct: 1541 DGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSPDGRYIASASEDKTVKIWQ 1600
Query: 329 FNKAQLSKKGPNMEIEAVQTMRGHDGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTL 508
+ L+ T+ H V+S +F SG LD + W
Sbjct: 1601 IDGHLLT------------TLPQHQAGVMSA------IFSPDGKTLISGSLDTTTKIWRF 1642
Query: 509 PNLEIDPYELYDSAQNALN 565
+ + ++ +A N
Sbjct: 1643 DSQQAKTSQMNTLVMSACN 1661
Score = 33.9 bits (76), Expect = 0.36
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Frame = +2
Query: 173 DSSVIETNSSKK---FW-----NVKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWN 328
D +I + S+ K W N+ +L H D V S++F + S + S S D TVK+W
Sbjct: 1499 DGKIIASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWR 1558
Query: 329 FNKAQLSKKGPNMEIEAVQTMRGHDGPVLSVRVLDEDLFLNSA---HLASSGGLDGNLRF 499
+ L + T GH V S + ++ SA +DG+L
Sbjct: 1559 SHDGHL-----------LHTFSGHSNVVYSSSFSPDGRYIASASEDKTVKIWQIDGHL-L 1606
Query: 500 WTLPNLEIDPYELYDSAQNALNISGA--HSSAIWTVD 604
TLP + S ISG+ ++ IW D
Sbjct: 1607 TTLPQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFD 1643
Score = 29.3 bits (64), Expect = 8.9
Identities = 23/94 (24%), Positives = 37/94 (39%)
Frame = +2
Query: 227 TLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHDG 406
TL G+ ++ +SF I S + D TVK+W +A++T+ GHD
Sbjct: 1400 TLPGN-KAIYGISFTPQGDLIASANADKTVKIWRVRDG-----------KALKTLIGHDN 1447
Query: 407 PVLSVRVLDEDLFLNSAHLASSGGLDGNLRFWTL 508
V V F +S D ++ W +
Sbjct: 1448 EVNKVN------FSPDGKTLASASRDNTVKLWNV 1475
>sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein HET-E-1
Length = 1356
Score = 53.1 bits (126), Expect = 6e-07
Identities = 43/148 (29%), Positives = 62/148 (41%)
Frame = +2
Query: 59 DLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNVKYTLRG 238
D AS T T +G +S S Q+++ G D + + S TL G
Sbjct: 1037 DTASGTCTQTLEGHG-GWVQSVVFSPDGQRVASGSDDHTIKIWDAVSG----TCTQTLEG 1091
Query: 239 HFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHDGPVLS 418
H DSV S++F + + SGS DGT+K+W+ QT+ GH G V S
Sbjct: 1092 HGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASG-----------TCTQTLEGHGGWVHS 1140
Query: 419 VRVLDEDLFLNSAHLASSGGLDGNLRFW 502
V F +SG +DG ++ W
Sbjct: 1141 V------AFSPDGQRVASGSIDGTIKIW 1162
Score = 47.8 bits (112), Expect = 2e-05
Identities = 41/148 (27%), Positives = 60/148 (40%)
Frame = +2
Query: 59 DLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNVKYTLRG 238
D AS T T +G + S S Q+++ G + +T S TL G
Sbjct: 953 DAASGTCTQTLEGHG-SSVLSVAFSPDGQRVASGSGDKTIKIWDTASG----TCTQTLEG 1007
Query: 239 HFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHDGPVLS 418
H SV S++F + + SGSDD T+K+W+ QT+ GH G V S
Sbjct: 1008 HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG-----------TCTQTLEGHGGWVQS 1056
Query: 419 VRVLDEDLFLNSAHLASSGGLDGNLRFW 502
V +F +SG D ++ W
Sbjct: 1057 V------VFSPDGQRVASGSDDHTIKIW 1078
Score = 47.0 bits (110), Expect = 4e-05
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +2
Query: 212 WNV-KYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQT 388
WN TL GH SV S++F + + SGSDD T+K+W+ QT
Sbjct: 830 WNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASG-----------TGTQT 878
Query: 389 MRGHDGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFW 502
+ GH G V SV F +SG D ++ W
Sbjct: 879 LEGHGGSVWSV------AFSPDRERVASGSDDKTIKIW 910
Score = 47.0 bits (110), Expect = 4e-05
Identities = 34/120 (28%), Positives = 50/120 (41%)
Frame = +2
Query: 143 QQISLGKDKVDSSVIETNSSKKFWNVKYTLRGHFDSVRSLSFYKNESAIISGSDDGTVKV 322
Q+++ G D + +T S TL GH SV S++F + + SGSDD T+K+
Sbjct: 854 QRVASGSDDKTIKIWDTASGTG----TQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKI 909
Query: 323 WNFNKAQLSKKGPNMEIEAVQTMRGHDGPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFW 502
W+ QT+ GH G V SV F +SG D ++ W
Sbjct: 910 WDAASG-----------TCTQTLEGHGGRVQSV------AFSPDGQRVASGSDDHTIKIW 952
Score = 47.0 bits (110), Expect = 4e-05
Identities = 39/148 (26%), Positives = 60/148 (40%)
Frame = +2
Query: 59 DLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNVKYTLRG 238
D AS T T +G + S S +++++ G D + + S TL G
Sbjct: 869 DTASGTGTQTLEGHG-GSVWSVAFSPDRERVASGSDDKTIKIWDAASG----TCTQTLEG 923
Query: 239 HFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHDGPVLS 418
H V+S++F + + SGSDD T+K+W+ QT+ GH VLS
Sbjct: 924 HGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASG-----------TCTQTLEGHGSSVLS 972
Query: 419 VRVLDEDLFLNSAHLASSGGLDGNLRFW 502
V F +SG D ++ W
Sbjct: 973 V------AFSPDGQRVASGSGDKTIKIW 994
Score = 45.1 bits (105), Expect = 2e-04
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 5/153 (3%)
Frame = +2
Query: 59 DLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNVK----- 223
D S T T +G D+ S S Q+++ G +D ++ K W+
Sbjct: 1079 DAVSGTCTQTLEGHG-DSVWSVAFSPDGQRVASGS--IDGTI-------KIWDAASGTCT 1128
Query: 224 YTLRGHFDSVRSLSFYKNESAIISGSDDGTVKVWNFNKAQLSKKGPNMEIEAVQTMRGHD 403
TL GH V S++F + + SGS DGT+K+W+ QT+ GH
Sbjct: 1129 QTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG-----------TCTQTLEGHG 1177
Query: 404 GPVLSVRVLDEDLFLNSAHLASSGGLDGNLRFW 502
G V SV F +SG D ++ W
Sbjct: 1178 GWVQSV------AFSPDGQRVASGSSDKTIKIW 1204
Score = 37.0 bits (84), Expect = 0.043
Identities = 26/90 (28%), Positives = 41/90 (45%)
Frame = +2
Query: 59 DLASITVTNDADGENLDASKSFCTSNPQQQISLGKDKVDSSVIETNSSKKFWNVKYTLRG 238
D AS T T +G +S S Q+++ G + +T S TL G
Sbjct: 1163 DAASGTCTQTLEGHG-GWVQSVAFSPDGQRVASGSSDKTIKIWDTASG----TCTQTLEG 1217
Query: 239 HFDSVRSLSFYKNESAIISGSDDGTVKVWN 328
H V+S++F + + SGS D T+K+W+
Sbjct: 1218 HGGWVQSVAFSPDGQRVASGSSDNTIKIWD 1247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,258,006
Number of Sequences: 369166
Number of extensions: 1247618
Number of successful extensions: 5216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4975
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)