Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01690
(902 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00168|KCC2A_DROME Calcium/calmodulin-dependent protein ... 386 e-107
sp|P15791|KCC2D_RAT Calcium/calmodulin-dependent protein ki... 384 e-106
sp|Q13557|KCC2D_HUMAN Calcium/calmodulin-dependent protein ... 380 e-105
sp|Q923T9|KCC2G_MOUSE Calcium/calmodulin-dependent protein ... 378 e-104
sp|P11275|KCC2A_RAT Calcium/calmodulin-dependent protein ki... 375 e-103
sp|P11730|KCC2G_RAT Calcium/calmodulin-dependent protein ki... 374 e-103
sp|Q5RCC4|KCC2A_PONPY Calcium/calmodulin-dependent protein ... 373 e-103
sp|P11798|KCC2A_MOUSE Calcium/calmodulin-dependent protein ... 371 e-102
sp|Q9UQM7|KCC2A_HUMAN Calcium/calmodulin-dependent protein ... 370 e-102
sp|P28652|KCC2B_MOUSE Calcium/calmodulin-dependent protein ... 367 e-101
>sp|Q00168|KCC2A_DROME Calcium/calmodulin-dependent protein kinase type II alpha chain
(CaM-kinase II alpha chain)
Length = 530
Score = 386 bits (991), Expect = e-107
Identities = 195/317 (61%), Positives = 241/317 (76%), Gaps = 18/317 (5%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SK+K A VKLADFGLA+E++ + +A W GFAGTPGYLSPEVL+K+PYGK VD+WACG
Sbjct: 143 LLASKAKGAAVKLADFGLAIEVQGDHQA-WFGFAGTPGYLSPEVLKKEPYGKSVDIWACG 201
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ+RLY+QIK+G +DYPSPEWDTVT EAKNLINQMLTVNP KRI
Sbjct: 202 VILYILLVGYPPFWDEDQHRLYSQIKAGAYDYPSPEWDTVTPEAKNLINQMLTVNPNKRI 261
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFSKFCSNR 542
TAAEALKHPWI QRE +AS+VHRQ+TVDCLKKFNARRKLKGAILTTMLATRNFS
Sbjct: 262 TAAEALKHPWICQRERVASVVHRQETVDCLKKFNARRKLKGAILTTMLATRNFS------ 315
Query: 543 DGSLVSKKSNGG-IKDSTDSAVPPAVEDTDDSKTPNRVMNCNSTILKSDVSCSEI----- 704
S+++KK G +K+STDS+ +ED D + ++ ++T++ + I
Sbjct: 316 SRSMITKKGEGSQVKESTDSS-STTLEDDDIKEDKKGTVDRSTTVVSKEPEDIRILCPAK 374
Query: 705 ------------ETKKQEIIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESMGNLIEG 848
++QEIIK+TEQLI +I++ DF+ Y K+ D +LT F PE++GNL+EG
Sbjct: 375 TYQQNIGNSQCSSARRQEIIKITEQLIEAINSGDFDGYTKICDPHLTAFEPEALGNLVEG 434
Query: 849 VDIHRFYFENALSKILK 899
+D H+FYFEN L K K
Sbjct: 435 IDFHKFYFENVLGKNCK 451
>sp|P15791|KCC2D_RAT Calcium/calmodulin-dependent protein kinase type II delta chain
(CaM-kinase II delta chain) (CaM kinase II delta subunit)
(CaMK-II delta subunit)
Length = 533
Score = 384 bits (985), Expect = e-106
Identities = 194/303 (64%), Positives = 234/303 (77%), Gaps = 4/303 (1%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SKSK A VKLADFGLA+E++ +++A W GFAGTPGYLSPEVLRKDPYGKPVD+WACG
Sbjct: 143 LLASKSKGAAVKLADFGLAIEVQGDQQA-WFGFAGTPGYLSPEVLRKDPYGKPVDMWACG 201
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ+RLY QIK+G +D+PSPEWDTVT EAK+LIN+MLT+NP KRI
Sbjct: 202 VILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRI 261
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFS---KFC 533
TA+EALKHPWI QR +ASM+HRQ+TVDCLKKFNARRKLKGAILTTMLATRNFS
Sbjct: 262 TASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKLKGAILTTMLATRNFSAAKSLL 321
Query: 534 SNRDGSLVSKKSNGGIKDSTDSAVPPAVEDTDDSKTPNRVMNCNST-ILKSDVSCSEIET 710
DG ++ K+N + S +P + + N N ST + + +++
Sbjct: 322 KKPDGVKINNKAN--VVTSPKENIPTPALEPQTTVIHNPDGNKESTESSNTTIEDEDVKA 379
Query: 711 KKQEIIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESMGNLIEGVDIHRFYFENALSK 890
+KQEIIKVTEQLI +I+ DF +Y K+ D LT F PE++GNL+EG+D HRFYFENAL K
Sbjct: 380 RKQEIIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGMDFHRFYFENALPK 439
Query: 891 ILK 899
I K
Sbjct: 440 INK 442
>sp|Q13557|KCC2D_HUMAN Calcium/calmodulin-dependent protein kinase type II delta chain
(CaM-kinase II delta chain) (CaM kinase II delta
subunit) (CaMK-II delta subunit)
Length = 499
Score = 380 bits (976), Expect = e-105
Identities = 196/296 (66%), Positives = 231/296 (78%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SKSK A VKLADFGLA+E++ +++A W GFAGTPGYLSPEVLRKDPYGKPVD+WACG
Sbjct: 143 LLASKSKGAAVKLADFGLAIEVQGDQQA-WFGFAGTPGYLSPEVLRKDPYGKPVDMWACG 201
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ+RLY QIK+G +D+PSPEWDTVT EAK+LIN+MLT+NP KRI
Sbjct: 202 VILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRI 261
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFSKFCSNR 542
TA+EALKHPWI QR +ASM+HRQ+TVDCLKKFNARRKLKGAILTTMLATRNFS
Sbjct: 262 TASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKLKGAILTTMLATRNFS-----A 316
Query: 543 DGSLVSKKSNGGIKDSTDSAVPPAVEDTDDSKTPNRVMNCNSTILKSDVSCSEIETKKQE 722
SL+ K G+K+ST+S+ N+TI DV + +KQE
Sbjct: 317 AKSLLKKPD--GVKESTESS--------------------NTTIEDEDV-----KARKQE 349
Query: 723 IIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESMGNLIEGVDIHRFYFENALSK 890
IIKVTEQLI +I+ DF +Y K+ D LT F PE++GNL+EG+D HRFYFENALSK
Sbjct: 350 IIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGMDFHRFYFENALSK 405
>sp|Q923T9|KCC2G_MOUSE Calcium/calmodulin-dependent protein kinase type II gamma chain
(CaM-kinase II gamma chain) (CaM kinase II gamma subunit)
(CaMK-II gamma subunit)
Length = 529
Score = 378 bits (970), Expect = e-104
Identities = 194/320 (60%), Positives = 237/320 (74%), Gaps = 24/320 (7%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SK K A VKLADFGLA+E+ + E+ +W GFAGTPGYLSPEVLRKDPYGKPVD+WACG
Sbjct: 143 LLASKCKGAAVKLADFGLAIEV-QGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACG 201
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ++LY QIK+G +D+PSPEWDTVT EAKNLINQMLT+NP KRI
Sbjct: 202 VILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRI 261
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFSKFCSNR 542
TA +ALKHPW+ QR +ASM+HRQ+TV+CL+KFNARRKLKGAILTTML +RNFS
Sbjct: 262 TADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLVSRNFS-----A 316
Query: 543 DGSLVSKKSNGGIK--------------DSTDSAVPPAVE----DTDDSKTPNRVMNCNS 668
SL++KKS+GG+K ++ +S V PA E T V N
Sbjct: 317 AKSLLNKKSDGGVKKRKSSSSVHLMPQSNNKNSLVSPAQEPAPLQTAMEPQTTVVHNATD 376
Query: 669 TILKSDVSCS------EIETKKQEIIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESM 830
I S SC+ +++ +KQEIIK+TEQLI +I+ DF +Y K+ D LT F PE++
Sbjct: 377 GIKGSTESCNTTTEDEDLKVRKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEAL 436
Query: 831 GNLIEGVDIHRFYFENALSK 890
GNL+EG+D H+FYFEN LSK
Sbjct: 437 GNLVEGMDFHKFYFENLLSK 456
>sp|P11275|KCC2A_RAT Calcium/calmodulin-dependent protein kinase type II alpha chain
(CaM-kinase II alpha chain) (CaM kinase II alpha
subunit) (CaMK-II alpha subunit)
Length = 478
Score = 375 bits (962), Expect = e-103
Identities = 191/296 (64%), Positives = 223/296 (75%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SK K A VKLADFGLA+E+ E E+ +W GFAGTPGYLSPEVLRKDPYGKPVD+WACG
Sbjct: 142 LLASKLKGAAVKLADFGLAIEV-EGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACG 200
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ+RLY QIK+G +D+PSPEWDTVT EAK+LIN+MLT+NP+KRI
Sbjct: 201 VILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRI 260
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFSKFCSNR 542
TAAEALKHPWI R +AS +HRQ+TVDCLKKFNARRKLKGAILTTMLATRNFS
Sbjct: 261 TAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGAILTTMLATRNFS------ 314
Query: 543 DGSLVSKKSNGGIKDSTDSAVPPAVEDTDDSKTPNRVMNCNSTILKSDVSCSEIETKKQE 722
G K N G+K+S++S N+TI D + +KQE
Sbjct: 315 GGKSGGNKKNDGVKESSEST--------------------NTTIEDEDT-----KVRKQE 349
Query: 723 IIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESMGNLIEGVDIHRFYFENALSK 890
IIKVTEQLI +IS DF SY K+ D +T F PE++GNL+EG+D HRFYFEN S+
Sbjct: 350 IIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSR 405
>sp|P11730|KCC2G_RAT Calcium/calmodulin-dependent protein kinase type II gamma chain
(CaM-kinase II gamma chain) (CaM kinase II gamma subunit)
(CaMK-II gamma subunit)
Length = 527
Score = 374 bits (960), Expect = e-103
Identities = 190/318 (59%), Positives = 232/318 (72%), Gaps = 22/318 (6%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SK K A VKLADFGLA+E+ + E+ +W GFAGTPGYLSPEVLRKDPYGKPVD+WACG
Sbjct: 143 LLASKCKGAAVKLADFGLAIEV-QGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACG 201
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ++LY QIK+G +D+PSPEWDTVT EAKNLINQMLT+NP KRI
Sbjct: 202 VILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRI 261
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFS------ 524
TA +ALKHPW+ QR +ASM+HRQ+TV+CL+KFNARRKLKGAILTTML +RNFS
Sbjct: 262 TADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLVSRNFSVGRQSS 321
Query: 525 ----------KFCSNRDGSLVSKKSNGGIKDSTDSAVPPAVEDTDDSKTPNRVMNCNSTI 674
SL++KKS+GG+K S+ +E V N I
Sbjct: 322 APASPAASAAGLAGQAAKSLLNKKSDGGVKKRKSSSSVHLME-----PQTTVVHNATDGI 376
Query: 675 LKSDVSCS------EIETKKQEIIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESMGN 836
S SC+ +++ +KQEIIK+TEQLI +I+ DF +Y K+ D LT F PE++GN
Sbjct: 377 KGSTESCNTTTEDEDLKVRKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGN 436
Query: 837 LIEGVDIHRFYFENALSK 890
L+EG+D H+FYFEN LSK
Sbjct: 437 LVEGMDFHKFYFENLLSK 454
>sp|Q5RCC4|KCC2A_PONPY Calcium/calmodulin-dependent protein kinase type II alpha chain
(CaM-kinase II alpha chain) (CaM kinase II alpha
subunit) (CaMK-II alpha subunit)
Length = 478
Score = 373 bits (957), Expect = e-103
Identities = 190/296 (64%), Positives = 223/296 (75%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SK K A VKLADFGLA+E+ E E+ +W GFAGTPGYLSPEVLRKDPYGKPVD+WACG
Sbjct: 142 LLASKLKGAAVKLADFGLAIEV-EGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACG 200
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ+RLY QIK+G +D+PSPEWDTVT EAK+LIN+MLT+NP+KRI
Sbjct: 201 VILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRI 260
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFSKFCSNR 542
TAAEALKHPWI R +AS +HRQ+TVDCLKKFNARRKLKGAILTTMLATRNFS
Sbjct: 261 TAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGAILTTMLATRNFS------ 314
Query: 543 DGSLVSKKSNGGIKDSTDSAVPPAVEDTDDSKTPNRVMNCNSTILKSDVSCSEIETKKQE 722
G K + G+K+S++S N+TI D + +KQE
Sbjct: 315 GGKSGGNKKSDGVKESSEST--------------------NTTIEDEDT-----KVRKQE 349
Query: 723 IIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESMGNLIEGVDIHRFYFENALSK 890
IIKVTEQLI +IS DF SY K+ D +T F PE++GNL+EG+D HRFYFEN S+
Sbjct: 350 IIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSR 405
>sp|P11798|KCC2A_MOUSE Calcium/calmodulin-dependent protein kinase type II alpha chain
(CaM-kinase II alpha chain) (CaM kinase II alpha
subunit) (CaMK-II alpha subunit)
Length = 478
Score = 371 bits (952), Expect = e-102
Identities = 190/296 (64%), Positives = 221/296 (74%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SK K A VKLADFGLA+E+ E E+ W GFAGTPGYLSPEVLRKDPYGKPVD+WACG
Sbjct: 142 LLASKLKGAAVKLADFGLAIEV-EGEQQRWFGFAGTPGYLSPEVLRKDPYGKPVDLWACG 200
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ+RLY QIK+ +D+PSPEWDTVT EAK+LIN+MLT+NP+KRI
Sbjct: 201 VILYILLVGYPPFWDEDQHRLYQQIKARAYDFPSPEWDTVTPEAKDLINKMLTINPSKRI 260
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFSKFCSNR 542
TAAEALKHPWI R +AS +HRQ+TVDCLKKFNARRKLKGAILTTMLATRNFS
Sbjct: 261 TAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGAILTTMLATRNFS------ 314
Query: 543 DGSLVSKKSNGGIKDSTDSAVPPAVEDTDDSKTPNRVMNCNSTILKSDVSCSEIETKKQE 722
G K N G+K+S++S N+TI D + +KQE
Sbjct: 315 GGKSGGNKKNDGVKESSEST--------------------NTTIEDEDT-----KVRKQE 349
Query: 723 IIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESMGNLIEGVDIHRFYFENALSK 890
IIKVTEQLI +IS DF SY K+ D +T F PE++GNL+EG+D HRFYFEN S+
Sbjct: 350 IIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSR 405
>sp|Q9UQM7|KCC2A_HUMAN Calcium/calmodulin-dependent protein kinase type II alpha chain
(CaM-kinase II alpha chain) (CaM kinase II alpha
subunit) (CaMK-II alpha subunit)
Length = 478
Score = 370 bits (950), Expect = e-102
Identities = 189/296 (63%), Positives = 222/296 (75%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SK K A VKLADFGLA+E+ E E+ +W GFAGTPGYLSPEVLRKDPYGKPVD+WACG
Sbjct: 142 LLASKLKGAAVKLADFGLAIEV-EGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACG 200
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ+RLY QIK+G +D+PSPEWDTVT EAK+LIN+MLT+NP+KRI
Sbjct: 201 VILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRI 260
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFSKFCSNR 542
TAAEALKHPWI R +AS +HRQ+TVDCLKKFNARRKLKGAILTTMLATRNFS
Sbjct: 261 TAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGAILTTMLATRNFS------ 314
Query: 543 DGSLVSKKSNGGIKDSTDSAVPPAVEDTDDSKTPNRVMNCNSTILKSDVSCSEIETKKQE 722
G K + G+K+S++S N+TI D + +KQE
Sbjct: 315 GGKSGGNKKSDGVKESSEST--------------------NTTIEDEDT-----KVRKQE 349
Query: 723 IIKVTEQLISSISACDFNSYAKLVDSNLTCFGPESMGNLIEGVDIHRFYFENALSK 890
IIKVTEQLI +IS F SY K+ D +T F PE++GNL+EG+D HRFYFEN S+
Sbjct: 350 IIKVTEQLIEAISNGGFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSR 405
>sp|P28652|KCC2B_MOUSE Calcium/calmodulin-dependent protein kinase type II beta chain
(CaM-kinase II beta chain) (CaM kinase II beta subunit)
(CaMK-II beta subunit)
Length = 542
Score = 367 bits (941), Expect = e-101
Identities = 191/329 (58%), Positives = 239/329 (72%), Gaps = 33/329 (10%)
Frame = +3
Query: 3 LLSSKSKNARVKLADFGLAVEMKENEEASWLGFAGTPGYLSPEVLRKDPYGKPVDVWACG 182
LL+SK K A VKLADFGLA+E++ +++A W GFAGTPGYLSPEVLRK+ YGKPVD+WACG
Sbjct: 143 LLASKCKGAAVKLADFGLAIEVQGDQQA-WFGFAGTPGYLSPEVLRKEAYGKPVDIWACG 201
Query: 183 VILYILLVGYPPFWDEDQNRLYAQIKSGLFDYPSPEWDTVTAEAKNLINQMLTVNPTKRI 362
VILYILLVGYPPFWDEDQ++LY QIK+G +D+PSPEWDTVT EAKNLINQMLT+NP KRI
Sbjct: 202 VILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRI 261
Query: 363 TAAEALKHPWIYQREHIASMVHRQQTVDCLKKFNARRKLKGAILTTMLATRNFS------ 524
TA EALKHPW+ QR +ASM+HRQ+TV+CLKKFNARRKLKGAILTTMLATRNFS
Sbjct: 262 TAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKLKGAILTTMLATRNFSVGRQTT 321
Query: 525 ---KFCSNRDG----------SLVSKKSNGGIKDSTDS------------AVPPAVEDTD 629
+ G SL++KK++ G+K T+S ++PPA +
Sbjct: 322 APATMSTAASGTTMGLVEQAKSLLNKKAD-GVKPQTNSTKNSSAITSPKGSLPPAALEPQ 380
Query: 630 DSKTPNRV--MNCNSTILKSDVSCSEIETKKQEIIKVTEQLISSISACDFNSYAKLVDSN 803
+ N V + +S + + + + +KQEIIK TEQLI +++ DF +YAK+ D
Sbjct: 381 TTVIHNPVDGIKESSDSTNTTIEDEDAKARKQEIIKTTEQLIEAVNNGDFEAYAKICDPG 440
Query: 804 LTCFGPESMGNLIEGVDIHRFYFENALSK 890
LT F PE++GNL+EG+D HRFYFEN L+K
Sbjct: 441 LTSFEPEALGNLVEGMDFHRFYFENLLAK 469
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,959,944
Number of Sequences: 369166
Number of extensions: 2163744
Number of successful extensions: 8997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8168
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)