Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01678
(245 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P80060|LCM_LOCMI Protease inhibitors precursor [Contains... 30 1.7
sp|O46163|SGP3_SCHGR Serine protease inhibitor III precurso... 30 2.3
sp|Q00174|LAMA_DROME Laminin alpha chain precursor 29 3.8
sp|O46162|SGP1_SCHGR Serine protease inhibitor I/II precurs... 28 6.6
sp|P59991|KR122_HUMAN Keratin-associated protein 12-2 (Kera... 28 8.6
sp|P49967|SR543_ARATH Signal recognition particle 54 kDa pr... 28 8.6
>sp|P80060|LCM_LOCMI Protease inhibitors precursor [Contains: Protease inhibitor LCMI-I
(PARS intercerebralis major peptide D2) (PMP-D2);
Protease inhibitor LCMI-II (PARS intercerebralis major
peptide C) (PMP-C)]
Length = 92
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = +3
Query: 36 KSYFDGCNTCLC----RSNACTVMAC 101
K++ D CNTC C +S ACT+ AC
Sbjct: 64 KTFKDKCNTCRCGADGKSAACTLKAC 89
>sp|O46163|SGP3_SCHGR Serine protease inhibitor III precursor (Protease inhibitor SGPI-3)
Length = 63
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +3
Query: 45 FDGCNTCLCRSNA---CTVMACSPFVGTELEY 131
+DGCN C C S CT+ C P G L +
Sbjct: 31 YDGCNWCTCSSGGAWICTLKYCPPSSGGGLTF 62
>sp|Q00174|LAMA_DROME Laminin alpha chain precursor
Length = 3712
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 6 QSDVCISDNIKSYFDGCNTCLCRSNACTVMACSPFVG 116
Q D C D+ K DGC C C C+P G
Sbjct: 2045 QCDRCAVDHWKYEKDGCTPCNCNQGYSRGFGCNPNTG 2081
>sp|O46162|SGP1_SCHGR Serine protease inhibitor I/II precursor [Contains: Protease
inhibitor SGPI-1 (Schistocerca gregaria trypsin
inhibitor) (SGTI); Protease inhibitor SGPI-2
(Schistocerca gregaria chymotrypsin inhibitor) (SGCI)]
Length = 92
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Frame = +3
Query: 39 SYFDGCNTCLC----RSNACTVMAC 101
++ D CNTC C +S ACT+ AC
Sbjct: 65 TFKDKCNTCRCGSDGKSAACTLKAC 89
>sp|P59991|KR122_HUMAN Keratin-associated protein 12-2 (Keratin-associated protein 12.2)
(High sulfur keratin-associated protein 12.2)
Length = 146
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 6 QSDVCISDNIKSYFDGCNTCLCRSNACTVMACSPFV 113
QS VC+ + KS C C+S+ C ++C P V
Sbjct: 61 QSSVCVPMSFKSAV--CVPVSCQSSVCVPVSCRPIV 94
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 (SRP54)
Length = 495
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 118 VPTNGEHAITVQAFERQRHVLQPSKYDLILSEMHTS 11
V T+G H FE R V + +K DL++ M +S
Sbjct: 189 VDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSS 224
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,831,501
Number of Sequences: 369166
Number of extensions: 310728
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)