Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01670
(265 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O29525|THIL_ARCFU Probable thiamine-monophosphate kinase... 29 3.8
sp|Q6FJ28|PALB_CANGA Calpain-like protease palB/RIM13 (Cyst... 28 6.4
sp|Q9H013|ADA19_HUMAN ADAM 19 precursor (A disintegrin and ... 28 6.4
>sp|O29525|THIL_ARCFU Probable thiamine-monophosphate kinase (Thiamine-phosphate kinase)
Length = 296
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 111 FLSAFVIYHIEFFETFLIGIIKCFTSF 31
FLS+ + IEFFE L+GI +C F
Sbjct: 87 FLSSISLKSIEFFEDILLGIKRCADRF 113
>sp|Q6FJ28|PALB_CANGA Calpain-like protease palB/RIM13 (Cysteine protease RIM13)
Length = 713
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 49 YYANEKCFEKLDMIDDKCGEKYKVLNAACRP 141
+Y NE+ FEK D + GE+Y+++ + RP
Sbjct: 535 FYMNERMFEKKD-LPLTSGERYRIVASTARP 564
>sp|Q9H013|ADA19_HUMAN ADAM 19 precursor (A disintegrin and metalloproteinase domain 19)
(Meltrin beta) (Metalloprotease and disintegrin
dentritic antigen marker) (MADDAM)
Length = 956
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 1 CKEYRDKYQQKASKAFYYANEKCFEKLDMIDDKCGEKYKVLNAACR 138
C Y+++ QQ A + CFEK+++ D G KV+N R
Sbjct: 519 CLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKVMNGEHR 564
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,884,153
Number of Sequences: 369166
Number of extensions: 513130
Number of successful extensions: 1198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)