Planaria EST Database


DrC_01670

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01670
         (265 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O29525|THIL_ARCFU  Probable thiamine-monophosphate kinase...    29   3.8  
sp|Q6FJ28|PALB_CANGA  Calpain-like protease palB/RIM13 (Cyst...    28   6.4  
sp|Q9H013|ADA19_HUMAN  ADAM 19 precursor (A disintegrin and ...    28   6.4  
>sp|O29525|THIL_ARCFU Probable thiamine-monophosphate kinase (Thiamine-phosphate kinase)
          Length = 296

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 111 FLSAFVIYHIEFFETFLIGIIKCFTSF 31
           FLS+  +  IEFFE  L+GI +C   F
Sbjct: 87  FLSSISLKSIEFFEDILLGIKRCADRF 113
>sp|Q6FJ28|PALB_CANGA Calpain-like protease palB/RIM13 (Cysteine protease RIM13)
          Length = 713

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 49  YYANEKCFEKLDMIDDKCGEKYKVLNAACRP 141
           +Y NE+ FEK D +    GE+Y+++ +  RP
Sbjct: 535 FYMNERMFEKKD-LPLTSGERYRIVASTARP 564
>sp|Q9H013|ADA19_HUMAN ADAM 19 precursor (A disintegrin and metalloproteinase domain 19)
           (Meltrin beta) (Metalloprotease and disintegrin
           dentritic antigen marker) (MADDAM)
          Length = 956

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 1   CKEYRDKYQQKASKAFYYANEKCFEKLDMIDDKCGEKYKVLNAACR 138
           C  Y+++ QQ        A + CFEK+++  D  G   KV+N   R
Sbjct: 519 CLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKVMNGEHR 564
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,884,153
Number of Sequences: 369166
Number of extensions: 513130
Number of successful extensions: 1198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)