Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01639
(775 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 49 2e-05
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 47 6e-05
sp|Q03164|HRX_HUMAN Zinc finger protein HRX (ALL-1) (Tritho... 35 0.30
sp|P55200|HRX_MOUSE Zinc finger protein HRX (ALL-1) 35 0.30
sp|P37875|SP5R_BACSU Stage V sporulation protein R 31 3.3
sp|P24109|TAT_HV2CA TAT protein (Transactivating regulatory... 30 7.3
sp|P53061|YGZ9_YEAST Hypothetical 82.8 kDa protein in HFM1-... 30 7.3
sp|P18739|ZO10_XENLA Oocyte zinc finger protein XLCOF10 30 7.3
sp|P46674|SAC3_YEAST Leucine permease transcriptional regul... 30 9.5
sp|Q9PPV4|TRUA_UREPA tRNA pseudouridine synthase A (tRNA-ur... 30 9.5
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +2
Query: 476 CVAFCTHCYLCHMYMMYGEFCCAPCMLHCDPLLLRVQHRNRHKIGGTLLNDCLTSWCCYL 655
C FC C C + E C L + +R +R R+ I G++ +D + + CC
Sbjct: 42 CGTFCFPCLGCQVAADMNE-----CCLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPH 96
Query: 656 CSICQIKRDMN 688
C++CQIKRD+N
Sbjct: 97 CTLCQIKRDIN 107
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 47.0 bits (110), Expect = 6e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +2
Query: 476 CVAFCTHCYLCHMYMMYGEFCCAPCMLHCDPLLLRVQHRNRHKIGGTLLNDCLTSWCCYL 655
C FC C C + E C L + +R +R R+ I G++ +D + + C +
Sbjct: 39 CGTFCFTCLGCQVAADMNE-----CCLCGTTVAMRTLYRTRYGIPGSICDDYMVTLFCPV 93
Query: 656 CSICQIKRDMN 688
CS+CQ+KRD+N
Sbjct: 94 CSVCQLKRDIN 104
>sp|Q03164|HRX_HUMAN Zinc finger protein HRX (ALL-1) (Trithorax-like protein)
Length = 3969
Score = 34.7 bits (78), Expect = 0.30
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +2
Query: 497 CYLC----HMYMMYGEFCCAPCMLHCDPLLLRVQHRNRHKIGGTLLNDCLTSWCCYLCSI 664
C+LC H+ +Y + CC P C ++ R L D L +WCC C
Sbjct: 1434 CFLCASSGHVEFVYCQVCCEPFHKFC------LEENERP------LEDQLENWCCRRCKF 1481
Query: 665 CQI 673
C +
Sbjct: 1482 CHV 1484
>sp|P55200|HRX_MOUSE Zinc finger protein HRX (ALL-1)
Length = 3866
Score = 34.7 bits (78), Expect = 0.30
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +2
Query: 497 CYLC----HMYMMYGEFCCAPCMLHCDPLLLRVQHRNRHKIGGTLLNDCLTSWCCYLCSI 664
C+LC H+ +Y + CC P C ++ R L D L +WCC C
Sbjct: 1333 CFLCSSSEHVEFVYCQVCCEPFHKFC------LEENERP------LEDQLENWCCRRCKF 1380
Query: 665 CQI 673
C +
Sbjct: 1381 CHV 1383
>sp|P37875|SP5R_BACSU Stage V sporulation protein R
Length = 468
Score = 31.2 bits (69), Expect = 3.3
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +1
Query: 175 TGFSLCSFGHDFHKDR---HIKIANFIEIKVSTDKIILFIIPSSTYLISKLYLSNV 333
T FS SFG FHK + + ++ E+ +++D F++ S++ + +KL +++V
Sbjct: 50 TRFSHWSFGKQFHKMKLHYDLGLSKIYELVINSDPCYAFLLDSNSLIQNKLIVAHV 105
>sp|P24109|TAT_HV2CA TAT protein (Transactivating regulatory protein)
Length = 133
Score = 30.0 bits (66), Expect = 7.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 623 NDCLTSWCCYLCSICQIKRDMNYVINLKG 709
N C CCY C +C +K+ + + KG
Sbjct: 55 NSCYCKRCCYHCQLCFLKKGLGICYDRKG 83
>sp|P53061|YGZ9_YEAST Hypothetical 82.8 kDa protein in HFM1-PDE1 intergenic region
Length = 704
Score = 30.0 bits (66), Expect = 7.3
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -3
Query: 533 IHHTSYTYDINSSAYRMLRNNLNVFYNETINK*IVLINFYMKTII 399
I+H++ Y I +S + LRNN ++ Y++ +N L+ + + II
Sbjct: 541 INHSTCVYKIQASRFMQLRNNGSLHYDKAVND---LLTEFQRVII 582
>sp|P18739|ZO10_XENLA Oocyte zinc finger protein XLCOF10
Length = 214
Score = 30.0 bits (66), Expect = 7.3
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Frame = +2
Query: 428 KQFIYLSFHYKIHLGCCVAFCTHCYLC-----HM------YMMYGEFCCAPCMLHCDPLL 574
K+F L H++IH G C C C HM ++ FCC+ C H
Sbjct: 39 KRFSLLKEHHRIHTGENTFTCDECGKCFTQKSHMTAHQKSHLGKKPFCCSECGKHFKQNS 98
Query: 575 LRVQHRNRH 601
V H+ H
Sbjct: 99 QLVVHQRTH 107
>sp|P46674|SAC3_YEAST Leucine permease transcriptional regulator
Length = 1301
Score = 29.6 bits (65), Expect = 9.5
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Frame = -3
Query: 320 YNLEMRYVDDGM-INKIILSVDTFISIKFAIFM*RSLWKSCPNEQRLKPVCI*CW*RNQS 144
++LEM+ DDG + K+I + +I F++ + W+S N ++S
Sbjct: 982 FDLEMKLKDDGEELIKLITGISLNTNICFSLLI--IYWESAENTL------------SES 1027
Query: 143 TVESKIKTDIEY*NLKYKIKRLYRKNC-----HQCLMNKLSILSFHY 18
T++ +K + N I+R+ N H+CL +KLS +S Y
Sbjct: 1028 TIKHLLKLNRISKNYSSVIERIDLMNLTEESPHKCLEDKLSEISHSY 1074
>sp|Q9PPV4|TRUA_UREPA tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I)
Length = 241
Score = 29.6 bits (65), Expect = 9.5
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -3
Query: 617 VFLQSCDDFDVALSVTRDHNVACTVHSKIHHTSYTYD--INSSAYRMLRNNLNVFYNETI 444
++ C + + V + H++ + TS TY IN + + RNN +F N+ I
Sbjct: 76 IYQALCSRTSSDIQILEVQKVDDSFHAQYNATSKTYQYVINDYEFDLFRNNYELFVNQKI 135
Query: 443 N 441
N
Sbjct: 136 N 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,832,721
Number of Sequences: 369166
Number of extensions: 1493059
Number of successful extensions: 3611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3606
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)