Planaria EST Database


DrC_01634

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01634
         (708 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VD76|TF2H3_MOUSE  TFIIH basal transcription factor comp...   122   9e-28
sp|Q13889|TF2H3_HUMAN  TFIIH basal transcription factor comp...   120   3e-27
sp|O74366|TFB4_SCHPO  RNA polymerase II transcription factor...    89   1e-17
sp|Q6CD24|TFB4_YARLI  RNA polymerase II transcription factor...    78   2e-14
sp|Q6CVX9|TFB4_KLULA  RNA polymerase II transcription factor...    77   6e-14
sp|Q75B93|TFB4_ASHGO  RNA polymerase II transcription factor...    73   6e-13
sp|Q6BL86|TFB4_DEBHA  RNA polymerase II transcription factor...    72   1e-12
sp|Q12004|TFB4_YEAST  RNA polymerase II transcription factor...    70   4e-12
sp|Q6FWA7|TFB4_CANGA  RNA polymerase II transcription factor...    70   4e-12
sp|Q04673|SSL1_YEAST  Suppressor of stem-loop protein 1            36   0.11 
>sp|Q8VD76|TF2H3_MOUSE TFIIH basal transcription factor complex p34 subunit (Basic
           transcription factor 2 34 kDa subunit) (BTF2-p34)
           (General transcription factor IIH polypeptide 3)
          Length = 309

 Score =  122 bits (306), Expect = 9e-28
 Identities = 61/176 (34%), Positives = 101/176 (57%)
 Frame = +1

Query: 22  SFIKSLCYYKRILKIHKTHNNQLGFCGRFIVVRTGLPDSSASFMSMMNGVFTAQKHDICI 201
           S  K+LCY  R+ K  K +        R +V++    DS+  +M+ MN +F AQK +I I
Sbjct: 137 SLAKALCYIHRVNKAVKDNQEMKS---RILVIKAA-EDSALQYMNFMNVIFAAQKQNILI 192

Query: 202 DVCILNPDEAIMHNNLHSNEFDKANILRQSVDMTNGIYLTINKIRDLLQYFITLYLTDVA 381
           D C+L+ D               + +L+Q+ D+T G+YL + ++  LLQY + ++L D  
Sbjct: 193 DACVLDSD---------------SGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237

Query: 382 DRQFMTMINNSNVDIDFRASCFCHGTLVSVGYVCSLCLAVFCHYSSLCACCYAVFQ 549
            R    +I    + +D+RA+CFCH +L+ +GYVCS+CL++FC++S +C  C   F+
Sbjct: 238 QRS--QLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAFK 291
>sp|Q13889|TF2H3_HUMAN TFIIH basal transcription factor complex p34 subunit (Basic
           transcription factor 2 34 kDa subunit) (BTF2-p34)
           (General transcription factor IIH polypeptide 3)
          Length = 308

 Score =  120 bits (302), Expect = 3e-27
 Identities = 62/176 (35%), Positives = 100/176 (56%)
 Frame = +1

Query: 22  SFIKSLCYYKRILKIHKTHNNQLGFCGRFIVVRTGLPDSSASFMSMMNGVFTAQKHDICI 201
           S  K+LCY  R+ K  K +        R +V++    DS+  +M+ MN +F AQK +I I
Sbjct: 136 SLAKALCYIHRMNKEVKDNQEMKS---RILVIKAA-EDSALQYMNFMNVIFAAQKQNILI 191

Query: 202 DVCILNPDEAIMHNNLHSNEFDKANILRQSVDMTNGIYLTINKIRDLLQYFITLYLTDVA 381
           D C+L+ D               + +L+Q+ D+T G+YL + ++  LLQY + ++L D  
Sbjct: 192 DACVLDSD---------------SGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 236

Query: 382 DRQFMTMINNSNVDIDFRASCFCHGTLVSVGYVCSLCLAVFCHYSSLCACCYAVFQ 549
            R    +I    V +D+RA+CFCH  L+ +GYVCS+CL++FC++S +C  C   F+
Sbjct: 237 QRS--QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFK 290
>sp|O74366|TFB4_SCHPO RNA polymerase II transcription factor B subunit 4 (RNA polymerase
           II transcription factor B p34 subunit) (RNA polymerase
           II transcription factor B 34 kDa subunit)
          Length = 297

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 48/138 (34%), Positives = 73/138 (52%)
 Frame = +1

Query: 133 DSSASFMSMMNGVFTAQKHDICIDVCILNPDEAIMHNNLHSNEFDKANILRQSVDMTNGI 312
           D +  ++  MN +F AQK +I I+VC           N+          L Q+ D T GI
Sbjct: 166 DVALQYIPTMNCIFCAQKKNIPINVC-----------NIEGGTL----FLEQAADATGGI 210

Query: 313 YLTINKIRDLLQYFITLYLTDVADRQFMTMINNSNVDIDFRASCFCHGTLVSVGYVCSLC 492
           YL ++  + LLQY +     D   R+ +   N +NVD  FRA+CFCH  ++ +G+VCS+C
Sbjct: 211 YLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVD--FRATCFCHKKVLDIGFVCSVC 268

Query: 493 LAVFCHYSSLCACCYAVF 546
           L++FC     C+ C+  F
Sbjct: 269 LSIFCEPRVHCSTCHTKF 286
>sp|Q6CD24|TFB4_YARLI RNA polymerase II transcription factor B subunit 4 (RNA polymerase
           II transcription factor B p34 subunit) (RNA polymerase
           II transcription factor B 34 kDa subunit)
          Length = 340

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 7/158 (4%)
 Frame = +1

Query: 103 RFIVVRTGLPDSSASFMSMMNGVFTAQKHDICIDVCILNPDEAIMHNNLHSNEFDKANIL 282
           R +++  G  + +  ++  MN +F AQK  I +DVC L P    +              L
Sbjct: 178 RILLLTVGHKNETIQYIPTMNCIFAAQKLKIPVDVCKLGPGSDQV-------------FL 224

Query: 283 RQSVDMTNGIYLTINKI-----RDLLQYFITLYLTDVADRQFMTMINNSNVDIDFRASCF 447
           +Q+ D T+GIY+ I++      + L+QY ++ +++D + R  + +   SNVD  FRA+CF
Sbjct: 225 QQACDSTHGIYMDISEKNSKTPKGLVQYLLSGFISDPSLRPHIVLPTQSNVD--FRAACF 282

Query: 448 CHGTLVSVGYVCSLCLAVFCHYSS--LCACCYAVFQDK 555
               +V +GYVCS+CL +     S   C  C   + +K
Sbjct: 283 LTKQVVDIGYVCSVCLCIMSQIPSNRRCPTCDTTYSEK 320
>sp|Q6CVX9|TFB4_KLULA RNA polymerase II transcription factor B subunit 4 (RNA polymerase
           II transcription factor B p34 subunit) (RNA polymerase
           II transcription factor B 34 kDa subunit)
          Length = 337

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 55/179 (30%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
 Frame = +1

Query: 34  SLCYYKRILKIHKTHNNQLGFCGRFIVVRTGLP---DSSASFMSMMNGVFTAQKHDICID 204
           +L Y  RILK     N       R +V+  G     D    ++ +MN +F+A K    ID
Sbjct: 154 ALTYVNRILK----ENENTSLRSRLLVITCGTSQGKDEIFQYIPIMNCIFSATKMKCSID 209

Query: 205 VCILNPDEAIMHNNLHSNEFDKANILRQSVDMTNGIYLTINKIRDLLQYFITLYLTDVAD 384
           V  +                 ++  L+Q+ D T+G+YL +   R L+QY  T    D + 
Sbjct: 210 VVKIGGGI-------------ESTFLQQATDATSGVYLHVENTRGLIQYLSTAMFIDPSL 256

Query: 385 RQFMTMINNSNVDIDFRASCFCHGTLVSVGYVCSLCLAVFCHY--SSLCACCYAVFQDK 555
           R  +   N  +VD  FR SCF  G +V+VG+VCS+CL V         C  C + F  K
Sbjct: 257 RNVIIKPNQGSVD--FRTSCFLTGKVVAVGFVCSVCLCVLSVIPPGQKCPACDSPFDSK 313
>sp|Q75B93|TFB4_ASHGO RNA polymerase II transcription factor B subunit 4 (RNA polymerase
           II transcription factor B p34 subunit) (RNA polymerase
           II transcription factor B 34 kDa subunit)
          Length = 341

 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 5/180 (2%)
 Frame = +1

Query: 37  LCYYKRILKIHKTHNNQLGFCGRFIVVRTGLP---DSSASFMSMMNGVFTAQKHDICIDV 207
           L Y  RI   H+T    L    R +V+  G     D    ++ +MN +F+A K    IDV
Sbjct: 158 LTYINRIT--HETEGVSLK--SRLLVITCGSSASKDEVFQYIPIMNCIFSATKMKCPIDV 213

Query: 208 CILNPDEAIMHNNLHSNEFDKANILRQSVDMTNGIYLTINKIRDLLQYFITLYLTDVADR 387
                        +      ++  L+Q+ D TNG YL +     L+QY  T    D + R
Sbjct: 214 -------------VKVGGVKESTFLQQATDATNGNYLHVANTDGLIQYLSTAMFIDPSLR 260

Query: 388 QFMTMINNSNVDIDFRASCFCHGTLVSVGYVCSLCLAVFCHY--SSLCACCYAVFQDKKV 561
           Q++   N S+VD  FR SC+  G +V++G+VCS+CL V       + C  C + F +K V
Sbjct: 261 QWVVKPNQSSVD--FRTSCYLTGKVVAIGFVCSVCLCVLSIIPPGNKCPACDSEFDEKVV 318
>sp|Q6BL86|TFB4_DEBHA RNA polymerase II transcription factor B subunit 4 (RNA polymerase
           II transcription factor B p34 subunit) (RNA polymerase
           II transcription factor B 34 kDa subunit)
          Length = 387

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
 Frame = +1

Query: 109 IVVRTGLPDSSASFMSMMNGVFTAQKHDICIDVCILNPDEAIMHNNLHSNEFDKANILRQ 288
           I++ +   D+   ++ +MN  F AQK  + IDV  L   ++              + L+Q
Sbjct: 219 ILIVSSNDDNDIKYIPIMNTTFAAQKMKVPIDVAKLGERDS--------------SYLQQ 264

Query: 289 SVDMTNGIYLTINKIRDLLQYFITLYLTDVADRQFMTMINNSNVDIDFRASCFCHGTLVS 468
           + D TNG+YL I     L+Q   T +  + + R  + +  NSNV+  +RASCF  G  V+
Sbjct: 265 ASDATNGVYLHIANPEGLIQTLSTAFFIEPSIRLLIILPTNSNVN--YRASCFITGKSVN 322

Query: 469 VGYVCSLCLAV--FCHYSSLCACCYAVFQDK 555
           +G+VCS+CL +         C  C + F +K
Sbjct: 323 LGFVCSVCLCIMSIIPKEGKCPTCGSKFDEK 353
>sp|Q12004|TFB4_YEAST RNA polymerase II transcription factor B subunit 4 (RNA polymerase
           II transcription factor B p34 subunit) (RNA polymerase
           II transcription factor B 34 kDa subunit)
          Length = 338

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 5/177 (2%)
 Frame = +1

Query: 37  LCYYKRILKIHKTHNNQLGFCGRFIVVRTGL---PDSSASFMSMMNGVFTAQKHDICIDV 207
           L Y  RI K   T + +     R +V+  G     D    ++ +MN +F+A K    IDV
Sbjct: 157 LTYVNRISKESVTTSLK----SRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDV 212

Query: 208 CILNPDEAIMHNNLHSNEFDKANILRQSVDMTNGIYLTINKIRDLLQYFITLYLTDVADR 387
             +   +             ++  L+Q+ D TNG+YL +     L+QY  T    D + R
Sbjct: 213 VKIGGSK-------------ESTFLQQTTDATNGVYLHVESTEGLIQYLATAMFIDPSLR 259

Query: 388 QFMTMINNSNVDIDFRASCFCHGTLVSVGYVCSLCLAVFCHY--SSLCACCYAVFQD 552
             +   N+ +VD  FR SC+  G +V+VG++CS+CL V       + C  C + F +
Sbjct: 260 PIIVKPNHGSVD--FRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQFDE 314
>sp|Q6FWA7|TFB4_CANGA RNA polymerase II transcription factor B subunit 4 (RNA polymerase
           II transcription factor B p34 subunit) (RNA polymerase
           II transcription factor B 34 kDa subunit)
          Length = 335

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 5/181 (2%)
 Frame = +1

Query: 34  SLCYYKRILKIHKTHNNQLGFCGRFIVVRTGLP---DSSASFMSMMNGVFTAQKHDICID 204
           +L Y  R+ K  ++    +    R +V+  G     D    ++ +MN +F+A K    ID
Sbjct: 153 ALTYTNRLTKEFES----ISLRSRLLVITCGSSREKDEIFQYIPIMNCIFSATKLKCPID 208

Query: 205 VCILNPDEAIMHNNLHSNEFDKANILRQSVDMTNGIYLTINKIRDLLQYFITLYLTDVAD 384
           V  +  ++             ++  L+Q+ D TNG+Y+ +     ++QY  T    D + 
Sbjct: 209 VIKIGGNK-------------QSTFLQQTTDATNGVYIHLESTNGIIQYLSTAMSIDPSL 255

Query: 385 RQFMTMINNSNVDIDFRASCFCHGTLVSVGYVCSLCLAVFCHY--SSLCACCYAVFQDKK 558
           RQ +  +  +   +DFR SC+  G +V++GY+CS+CL V       + C  C + F ++ 
Sbjct: 256 RQII--VRPTQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSIIPPGNKCPACDSQFDERV 313

Query: 559 V 561
           +
Sbjct: 314 I 314
>sp|Q04673|SSL1_YEAST Suppressor of stem-loop protein 1
          Length = 461

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 442 CFCHGTLVSVGYVCSLCLAVFCHYSSLCACC 534
           C CH  LV  GY C  C +  C   ++C CC
Sbjct: 336 CSCHSKLVYGGYFCPNCHSKVCSLPTVCPCC 366
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,606,407
Number of Sequences: 369166
Number of extensions: 1439162
Number of successful extensions: 3644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3626
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)