Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01625
(824 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91WD5|NUCM_MOUSE NADH-ubiquinone oxidoreductase 49 kDa ... 399 e-111
sp|P17694|NUCM_BOVIN NADH-ubiquinone oxidoreductase 49 kDa ... 398 e-111
sp|O75306|NUCM_HUMAN NADH-ubiquinone oxidoreductase 49 kDa ... 397 e-110
sp|Q93873|NUCM_CAEEL Probable NADH-ubiquinone oxidoreductas... 391 e-108
sp|P22142|NUCM_NEUCR NADH-ubiquinone oxidoreductase 49 kDa ... 375 e-103
sp|O21270|NUCM_RECAM NADH-ubiquinone oxidoreductase 49 kDa ... 366 e-101
sp|Q9TC96|NUCM_NEPOL NADH-ubiquinone oxidoreductase 49 kDa ... 362 e-100
sp|Q37384|NUCM_ACACA NADH-ubiquinone oxidoreductase 49 kDa ... 357 2e-98
sp|Q37619|NUCM_PROWI NADH-ubiquinone oxidoreductase 49 kDa ... 351 1e-96
sp|Q37720|NUCM_PYLLI NADH-ubiquinone oxidoreductase 49 kDa ... 350 3e-96
>sp|Q91WD5|NUCM_MOUSE NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor (Complex I-49KD) (CI-49KD)
Length = 463
Score = 399 bits (1025), Expect = e-111
Identities = 185/249 (74%), Positives = 213/249 (85%)
Frame = +3
Query: 72 KEMQVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQA 251
KE V N+ +NFGPQHPAAHGVLRLVL L GE V K DPH+GLLHR TEKLIEYKTY QA
Sbjct: 73 KEKAVTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQA 132
Query: 252 LPYFDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHIL 431
LPYFDRLDYVSMMCNEQ Y +AVEKLLNI+ PPRA++IR LFGE+TR+LNH M++ TH L
Sbjct: 133 LPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRILNHIMAVTTHAL 192
Query: 432 DIGGLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKFP 611
DIG +TP FW+FEEREKM EFYERVSGARMHAAYIRPGGV QD+P+GL+DDIYEF F
Sbjct: 193 DIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFS 252
Query: 612 QRLDEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAYG 791
R+DEVE+++TNN IW RT DIG+++AEDA+NYG SG MLRGSGI+WDLRK+QPYD Y
Sbjct: 253 LRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYD 312
Query: 792 DMEFDIPIG 818
+EFD+PIG
Sbjct: 313 QVEFDVPIG 321
>sp|P17694|NUCM_BOVIN NADH-ubiquinone oxidoreductase 49 kDa subunit (Complex I-49KD)
(CI-49KD)
Length = 430
Score = 398 bits (1023), Expect = e-111
Identities = 185/249 (74%), Positives = 212/249 (85%)
Frame = +3
Query: 72 KEMQVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQA 251
K+ V N+ +NFGPQHPAAHGVLRLV+ L GE V K DPH+GLLHR TEKLIEYKTY QA
Sbjct: 40 KDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQA 99
Query: 252 LPYFDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHIL 431
LPYFDRLDYVSMMCNEQ Y LAVEKLLNI PPRA++IR LFGE+TRLLNH M++ TH L
Sbjct: 100 LPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHAL 159
Query: 432 DIGGLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKFP 611
DIG +TP FW+FEEREKM EFYERVSGARMHAAY+RPGGV QD+P+GLMDDIYEF F
Sbjct: 160 DIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFS 219
Query: 612 QRLDEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAYG 791
R+DE+E+++TNN IW RT DIGI++AEDA+NYG SG MLRGSGI+WDLRK+QPYD Y
Sbjct: 220 LRIDELEEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYD 279
Query: 792 DMEFDIPIG 818
+EFD+PIG
Sbjct: 280 QVEFDVPIG 288
>sp|O75306|NUCM_HUMAN NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor (Complex I-49KD) (CI-49KD)
Length = 463
Score = 397 bits (1020), Expect = e-110
Identities = 185/249 (74%), Positives = 213/249 (85%)
Frame = +3
Query: 72 KEMQVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQA 251
K+ V+NI +NFGPQHPAAHGVLRLV+ L GE V K DPH+GLLHR TEKLIEYKTY QA
Sbjct: 73 KDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQA 132
Query: 252 LPYFDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHIL 431
LPYFDRLDYVSMMCNEQ Y LAVEKLLNI PPRA++IR LFGE+TRLLNH M++ TH L
Sbjct: 133 LPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHAL 192
Query: 432 DIGGLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKFP 611
D+G +TP FWLFEEREKM EFYERVSGARMHAAYIRPGGV QD+P+GLMDDIY+F F
Sbjct: 193 DLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFS 252
Query: 612 QRLDEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAYG 791
RLDE+E+L+TNN IW RT DIG+++AE+A+NYG SG MLRGSGI+WDLRK+QPYD Y
Sbjct: 253 LRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYD 312
Query: 792 DMEFDIPIG 818
+EFD+P+G
Sbjct: 313 QVEFDVPVG 321
>sp|Q93873|NUCM_CAEEL Probable NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial precursor (Complex I-49KD) (CI-49KD)
Length = 482
Score = 391 bits (1005), Expect = e-108
Identities = 179/250 (71%), Positives = 218/250 (87%)
Frame = +3
Query: 69 EKEMQVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQ 248
++E ++N+ +NFGPQHPAAHGVLRLVL L+GE ++KA PH+GLLHRATEKLIE+KTYTQ
Sbjct: 91 QREKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQ 150
Query: 249 ALPYFDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHI 428
ALPYFDRLDYVSMMCNEQ + LAVEKLL I+IP RAKYIRTL GELTR+ NH M I TH
Sbjct: 151 ALPYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPTRAKYIRTLMGELTRIQNHIMGITTHA 210
Query: 429 LDIGGLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKF 608
LD+G +TP FW+FEEREK+ EF ERVSGARMHA Y+RPGGV+ D+PIGLMDDIY++ +KF
Sbjct: 211 LDVGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPIGLMDDIYDWAIKF 270
Query: 609 PQRLDEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAY 788
P+R+DE+ED++T N IW ART DIG++SA DA+N+G SG M+RGSGI+ D+RK++PYDAY
Sbjct: 271 PERIDELEDMLTENRIWKARTIDIGLVSAADALNWGFSGVMVRGSGIKQDVRKTEPYDAY 330
Query: 789 GDMEFDIPIG 818
DMEFD+PIG
Sbjct: 331 ADMEFDVPIG 340
>sp|P22142|NUCM_NEUCR NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor (Complex I-49KD) (CI-49KD)
Length = 478
Score = 375 bits (962), Expect = e-103
Identities = 167/248 (67%), Positives = 210/248 (84%)
Frame = +3
Query: 81 QVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQALPY 260
+V++ +NFGPQHPAAHGVLRL+L L GE +V+ADPHVGLLHR TEKL EY+TY QALPY
Sbjct: 91 KVRHYTVNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYRTYLQALPY 150
Query: 261 FDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHILDIG 440
FDRLDYVSMM NEQC+ LAVEKLLN+EIP RAK+IRT+F E+TR+LNH MS+ +H +D+G
Sbjct: 151 FDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTMFAEITRILNHLMSVLSHAMDVG 210
Query: 441 GLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKFPQRL 620
LTP W FEEREK++EFYERVSGAR+HAAY+RPGGV QD+P+GL+DDIY + +F R+
Sbjct: 211 ALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYMWATQFGDRI 270
Query: 621 DEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAYGDME 800
DE E+++T+N IWI R + IG++SA DA+N +G MLRGSG+ WD+RKSQPYDAY +E
Sbjct: 271 DETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAYDQVE 330
Query: 801 FDIPIGVN 824
FD+P+G+N
Sbjct: 331 FDVPVGIN 338
>sp|O21270|NUCM_RECAM NADH-ubiquinone oxidoreductase 49 kDa subunit (NADH dehydrogenase
subunit 7)
Length = 396
Score = 366 bits (940), Expect = e-101
Identities = 169/246 (68%), Positives = 205/246 (83%)
Frame = +3
Query: 81 QVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQALPY 260
+++N +NFGPQHPAAHGVLRLVL L+GE V +ADPH+GLLHR TEKLIEYK Y QALPY
Sbjct: 9 KLKNFTMNFGPQHPAAHGVLRLVLELNGEVVNRADPHIGLLHRGTEKLIEYKNYLQALPY 68
Query: 261 FDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHILDIG 440
FDRLDYVSMM E Y LAVEKLL E+P RA+YIR LF E+TR+LNH M++ TH LD+G
Sbjct: 69 FDRLDYVSMMAQEHAYSLAVEKLLGCEVPKRAQYIRVLFCEITRILNHLMAVTTHALDVG 128
Query: 441 GLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKFPQRL 620
+TP W FEEREK++EFYERVSGARMHAAYIRPGGVSQDMP+GL +DIY+F +F R+
Sbjct: 129 AMTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVSQDMPMGLSEDIYKFAKQFGSRI 188
Query: 621 DEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAYGDME 800
DE+ED++++N IW R DIG +SAE+A+++G SG MLRGSGI WDLRK+QPYD Y ++E
Sbjct: 189 DEIEDVLSSNRIWKQRLVDIGTVSAEEALDWGFSGVMLRGSGIAWDLRKTQPYDVYDELE 248
Query: 801 FDIPIG 818
FDIP+G
Sbjct: 249 FDIPVG 254
>sp|Q9TC96|NUCM_NEPOL NADH-ubiquinone oxidoreductase 49 kDa subunit (NADH dehydrogenase
subunit 7)
Length = 398
Score = 362 bits (929), Expect = e-100
Identities = 165/246 (67%), Positives = 202/246 (82%)
Frame = +3
Query: 81 QVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQALPY 260
+V+N +NFGPQHPAAHGVLRLVL L+GE V +ADPH+GLLHR TEKLIEYKTYTQALPY
Sbjct: 11 KVKNFTLNFGPQHPAAHGVLRLVLELNGEVVARADPHIGLLHRGTEKLIEYKTYTQALPY 70
Query: 261 FDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHILDIG 440
FDRLDYVSMMC E Y LAVEKLL+ E+P RA+YIR LF E+TR+LNH +++ TH +D+G
Sbjct: 71 FDRLDYVSMMCQEHAYSLAVEKLLHCEVPERAQYIRVLFSEITRILNHLLALTTHAMDVG 130
Query: 441 GLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKFPQRL 620
LTP W FEEREK++EFYERVSG+RMHAAYIRPGGV+ D+P L +DIY F +F R+
Sbjct: 131 ALTPFLWAFEEREKLIEFYERVSGSRMHAAYIRPGGVACDLPANLCEDIYLFCQQFASRI 190
Query: 621 DEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAYGDME 800
DE+E+++TNN IW R DIGI++AE+A +G SG +LRGSG+ WDLRK+QPYD Y M
Sbjct: 191 DEMEEMLTNNRIWKQRLVDIGIVTAENAFAWGFSGVLLRGSGVAWDLRKTQPYDVYNRMI 250
Query: 801 FDIPIG 818
FD+P+G
Sbjct: 251 FDVPVG 256
>sp|Q37384|NUCM_ACACA NADH-ubiquinone oxidoreductase 49 kDa subunit (NADH dehydrogenase
subunit 7)
Length = 401
Score = 357 bits (917), Expect = 2e-98
Identities = 165/251 (65%), Positives = 203/251 (80%)
Frame = +3
Query: 72 KEMQVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQA 251
K +++N +NFGPQHPAAHGVLRL+L LDGE V KADPH+GLLHR TEKLIEYKTY QA
Sbjct: 11 KTSKIKNFTMNFGPQHPAAHGVLRLILELDGELVRKADPHIGLLHRGTEKLIEYKTYIQA 70
Query: 252 LPYFDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHIL 431
LPYFDRLDYVSMM E Y LA+EKLLN +P RA+YIR ++ ELTR+LNH +++ TH +
Sbjct: 71 LPYFDRLDYVSMMSQEHAYSLAIEKLLNCNVPIRAQYIRVIYSELTRILNHILAVTTHAM 130
Query: 432 DIGGLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKFP 611
D+G LTP WLFEEREK++EFYERVSGARMHAAYIRPGGV+QD P+GL +DI +F+ +F
Sbjct: 131 DVGALTPFLWLFEEREKLMEFYERVSGARMHAAYIRPGGVAQDFPLGLWNDIMQFVEQFF 190
Query: 612 QRLDEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAYG 791
RL EVE+L+ N IW R D+GI++AE+A+++G SG MLRGSGI WDLRK+ PY+ Y
Sbjct: 191 WRLVEVEELLNGNRIWKQRLVDVGIVTAEEALSHGFSGVMLRGSGIAWDLRKNNPYEVYN 250
Query: 792 DMEFDIPIGVN 824
+ F+IPIG N
Sbjct: 251 KLNFNIPIGKN 261
>sp|Q37619|NUCM_PROWI NADH-ubiquinone oxidoreductase 49 kDa subunit (NADH dehydrogenase
subunit 7)
Length = 400
Score = 351 bits (901), Expect = 1e-96
Identities = 161/246 (65%), Positives = 202/246 (82%), Gaps = 2/246 (0%)
Frame = +3
Query: 87 QNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQALPYFD 266
+N INFGPQHPAAHGVLRLVL ++GE V ++DPH+GLLHR TEKLIEYK Y QALPYFD
Sbjct: 13 KNFTINFGPQHPAAHGVLRLVLEMNGEVVQRSDPHIGLLHRGTEKLIEYKNYLQALPYFD 72
Query: 267 RLDYVSMMCNEQCYCLAVEKLLNI--EIPPRAKYIRTLFGELTRLLNHCMSIATHILDIG 440
RLDYVSMMC E Y LAVEKLLNI +IP RA+YIR LF E+TR+LNH +++ H +D+G
Sbjct: 73 RLDYVSMMCQEHAYSLAVEKLLNISKDIPLRAQYIRVLFSEITRILNHLLAVTCHAMDVG 132
Query: 441 GLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKFPQRL 620
LTP W FEEREK++EFYERVSGARMHAAYIRPGGV+ D+P+GL +DIY+F +F R+
Sbjct: 133 ALTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVALDLPLGLCEDIYKFSKQFASRI 192
Query: 621 DEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAYGDME 800
DE+E+++T+N IW R D+G++SAE A+++ SG +LRGSGI WDLRK+QPY+ Y M+
Sbjct: 193 DEIEEMLTSNRIWKQRLVDVGVVSAEQALDWSFSGVLLRGSGIAWDLRKTQPYEVYDRMK 252
Query: 801 FDIPIG 818
F+IP+G
Sbjct: 253 FNIPVG 258
>sp|Q37720|NUCM_PYLLI NADH-ubiquinone oxidoreductase 49 kDa subunit (NADH dehydrogenase
subunit 7)
Length = 398
Score = 350 bits (898), Expect = 3e-96
Identities = 158/250 (63%), Positives = 203/250 (81%)
Frame = +3
Query: 69 EKEMQVQNIQINFGPQHPAAHGVLRLVLTLDGETVVKADPHVGLLHRATEKLIEYKTYTQ 248
E ++++ INFGPQHPAAHGVLRL+L L+GE V +ADPH+GLLHR TEKLIE KTY Q
Sbjct: 7 EFNKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQ 66
Query: 249 ALPYFDRLDYVSMMCNEQCYCLAVEKLLNIEIPPRAKYIRTLFGELTRLLNHCMSIATHI 428
ALPYFDRLDYVSMMC E Y L+VE LL + IP RA++IR LF E+TR+LNH +++ H
Sbjct: 67 ALPYFDRLDYVSMMCQEHTYALSVENLLQVSIPRRAQFIRVLFAEITRILNHLLAVGCHA 126
Query: 429 LDIGGLTPLFWLFEEREKMLEFYERVSGARMHAAYIRPGGVSQDMPIGLMDDIYEFLVKF 608
+D+G +TP W FEEREK++EFYERVSGARMHA+Y RPGGVSQD+ +GL+DDI+ F+ +F
Sbjct: 127 MDVGAMTPFLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISVGLVDDIFAFVAQF 186
Query: 609 PQRLDEVEDLVTNNPIWIARTKDIGIISAEDAINYGMSGPMLRGSGIRWDLRKSQPYDAY 788
QRLDE+E+++T+N IW R DIG++SA++AI++G SG MLRGSGIRWDLRK++PY+ Y
Sbjct: 187 GQRLDEIEEMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGIRWDLRKNEPYEIY 246
Query: 789 GDMEFDIPIG 818
D+ F +G
Sbjct: 247 SDLNFQGVVG 256
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,817,431
Number of Sequences: 369166
Number of extensions: 1997401
Number of successful extensions: 4896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4882
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)