Planaria EST Database


DrC_01621

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01621
         (328 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95777|LSM8_HUMAN  U6 snRNA-associated Sm-like protein LS...    95   4e-20
sp|O74483|LSM8_SCHPO  U6 snRNA-associated Sm-like protein LSm8     80   1e-15
sp|P87173|YB18_SCHPO  Hypothetical protein C3D6.08c in chrom...    49   4e-06
sp|P47017|LSM1_YEAST  Sm-like protein LSm1 (SPB8 protein)          45   4e-05
sp|O15116|LSM1_HUMAN  U6 snRNA-associated Sm-like protein LS...    45   7e-05
sp|Q8VC85|LSM1_MOUSE  U6 snRNA-associated Sm-like protein LSm1     45   7e-05
sp|P47093|YJZ2_YEAST  Hypothetical 14.5 kDa protein in MER2-...    42   3e-04
sp|O74966|RUXG_SCHPO  Probable small nuclear ribonucleoprote...    37   0.018
sp|Q8SQH7|LSMH_ENCCU  Probable U6 snRNA-associated Sm-like p...    35   0.040
sp|O82221|RUXG_ARATH  Probable small nuclear ribonucleoprote...    35   0.053
>sp|O95777|LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8
 sp|Q6ZWM4|LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8
          Length = 96

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
 Frame = +2

Query: 8   MASELESYVGRIVIVLTTEGSVVTGVLKGFDNLTELIVKDAEERI-CSLQGVEKVPLRLY 184
           M S LE+Y+ R V V+T++G ++ G LKGFD    LI+ ++ ER+  S QGVE+V L LY
Sbjct: 1   MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60

Query: 185 FLRGDNVALVGEVDEDVDRRTNWSNVFVEPLGKIIH 292
            +RGDNVA++GE+DE+ D   +  N+  EPL  + H
Sbjct: 61  IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8
          Length = 94

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
 Frame = +2

Query: 20  LESYVGRIVIVLTTEGSVVTGVLKGFDNLTELIVKDAEERICSL-QGVEKVPLRLYFLRG 196
           L  ++ + V V+T +G VV G LKGFD+ T LI+ D+ ERI S+ Q +E +PL +Y LRG
Sbjct: 3   LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62

Query: 197 DNVALVGEVDEDVDRRTNWSNVFVEPLGKIIH 292
           +NVA+VG V+E++D    W+ +  E +  ++H
Sbjct: 63  ENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
>sp|P87173|YB18_SCHPO Hypothetical protein C3D6.08c in chromosome II
          Length = 140

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 26/74 (35%), Positives = 41/74 (55%)
 Frame = +2

Query: 11  ASELESYVGRIVIVLTTEGSVVTGVLKGFDNLTELIVKDAEERICSLQGVEKVPLRLYFL 190
           +  L  YV R VIV+  +G  + G+L+ FD    L+++   ERI        +   +Y +
Sbjct: 13  SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIV 72

Query: 191 RGDNVALVGEVDED 232
           RG+NV L+GE+D D
Sbjct: 73  RGENVVLLGELDLD 86
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 (SPB8 protein)
          Length = 172

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
 Frame = +2

Query: 26  SYVGRIVIVLTTEGSVVTGVLKGFDNLTELIVKDAEERI--CSLQGVEKVPLRLYFLRGD 199
           S V R + VL  +G ++ GVL+ FD    LI++D  ERI         +    ++ +RG+
Sbjct: 48  SSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGE 107

Query: 200 NVALVGEVDED 232
           NV ++GEVD D
Sbjct: 108 NVVMLGEVDID 118
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear
           CaSm) (Cancer-associated Sm-like)
          Length = 133

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 22/77 (28%), Positives = 40/77 (51%)
 Frame = +2

Query: 47  IVLTTEGSVVTGVLKGFDNLTELIVKDAEERICSLQGVEKVPLRLYFLRGDNVALVGEVD 226
           +VL  +G  + G L+  D    L++    ERI   +    +P  ++ +RG+NV L+GE+D
Sbjct: 19  LVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEID 78

Query: 227 EDVDRRTNWSNVFVEPL 277
            + +  T    V +E +
Sbjct: 79  LEKESDTPLQQVSIEEI 95
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1
          Length = 133

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 22/77 (28%), Positives = 40/77 (51%)
 Frame = +2

Query: 47  IVLTTEGSVVTGVLKGFDNLTELIVKDAEERICSLQGVEKVPLRLYFLRGDNVALVGEVD 226
           +VL  +G  + G L+  D    L++    ERI   +    +P  ++ +RG+NV L+GE+D
Sbjct: 19  LVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEID 78

Query: 227 EDVDRRTNWSNVFVEPL 277
            + +  T    V +E +
Sbjct: 79  LEKESDTPLQQVSIEEI 95
>sp|P47093|YJZ2_YEAST Hypothetical 14.5 kDa protein in MER2-BNA1 intergenic region
          Length = 128

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 25/77 (32%), Positives = 42/77 (54%)
 Frame = +2

Query: 8   MASELESYVGRIVIVLTTEGSVVTGVLKGFDNLTELIVKDAEERICSLQGVEKVPLRLYF 187
           M++ L+ Y+ + V+++  +G  +   L GFD  T L + +   RI S + + K  L    
Sbjct: 20  MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI-SKEFICKAQL---- 74

Query: 188 LRGDNVALVGEVDEDVD 238
           LRG  +ALVG +D + D
Sbjct: 75  LRGSEIALVGLIDAEND 91
>sp|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 77

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +2

Query: 11  ASELESYVGRIVIVLTTEGSVVTGVLKGFDNLTELIVKDA-EERICSLQGVEKVPLRLYF 187
           A +L+ Y+ R V V       V GVL+G+D    ++++D+ EE++      EKV +    
Sbjct: 6   APDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG----EKVKIGSVA 61

Query: 188 LRGDNVALVGEVDE 229
           +RG++V ++  +D+
Sbjct: 62  IRGNSVIMIETLDK 75
>sp|Q8SQH7|LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein
          Length = 70

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = +2

Query: 20  LESYVGRIVIVLTTEGSVVTGVLKGFDNLTELIVKDAEERICSLQGVEKVPLRLYFLRGD 199
           L+ Y+   V V T  G   TG L+GFD    L++  +     S++G E    ++ FLRG+
Sbjct: 8   LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLMLTCS-----SVEGSED---KVLFLRGE 59

Query: 200 NVALVG 217
           N+  VG
Sbjct: 60  NILFVG 65
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 80

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 21/75 (28%), Positives = 39/75 (52%)
 Frame = +2

Query: 17  ELESYVGRIVIVLTTEGSVVTGVLKGFDNLTELIVKDAEERICSLQGVEKVPLRLYFLRG 196
           +L+ Y+ + + +      +VTG L+GFD    L+V +  E    + G +K  + +  +RG
Sbjct: 9   DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE----VNGNDKTDIGMVVIRG 64

Query: 197 DNVALVGEVDEDVDR 241
           +++  V E  E V R
Sbjct: 65  NSIVTV-EALEPVGR 78
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,098,920
Number of Sequences: 369166
Number of extensions: 498649
Number of successful extensions: 1565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)