Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01619
(601 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19096|FAS_MOUSE Fatty acid synthase [Includes: [Acyl-ca... 30 3.6
sp|Q8Z2T0|OMPL_SALTI Porin ompL precursor 30 3.6
sp|Q9L7R3|OMPL_SALTY Porin ompL precursor 30 3.6
sp|Q5PKD5|OMPL_SALPA Porin ompL precursor 30 3.6
sp|P67452|EX7L_STRP1 Probable exodeoxyribonuclease VII larg... 30 4.7
sp|Q5XB25|EX7L_STRP6 Probable exodeoxyribonuclease VII larg... 30 4.7
sp|Q8X8F2|OMPL_ECO57 Porin ompL precursor 30 4.7
sp|Q8NS78|RF2_CORGL Peptide chain release factor 2 (RF-2) 30 6.1
>sp|P19096|FAS_MOUSE Fatty acid synthase [Includes: [Acyl-carrier-protein]
S-acetyltransferase ; [Acyl-carrier-protein]
S-malonyltransferase ; 3-oxoacyl-[acyl-carrier-protein]
synthase ; 3-oxoacyl-[acyl-carrier-protein] reductase ;
3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase ;
Enoyl-[acyl-carrier-protein] reductase ;
Oleoyl-[acyl-carrier-protein] hydrolase ]
Length = 2504
Score = 30.4 bits (67), Expect = 3.6
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -2
Query: 438 RISTAQNKYSALNHALDRNQISFQISSFWHEIR 340
R++ + + + +H+LDR ++SF SF+H++R
Sbjct: 2389 RVAASVDLITKSHHSLDRRELSFAAVSFYHKLR 2421
>sp|Q8Z2T0|OMPL_SALTI Porin ompL precursor
Length = 230
Score = 30.4 bits (67), Expect = 3.6
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 441 VRISTAQNKYSA--LNHALDRNQISFQISSFWHEIRTNKFRY 322
VR N YS+ LN LD N S++I ++W+ I T+KF Y
Sbjct: 122 VRNRYNHNNYSSTDLNGELDNND-SYEIGNYWNFIITDKFSY 162
>sp|Q9L7R3|OMPL_SALTY Porin ompL precursor
Length = 230
Score = 30.4 bits (67), Expect = 3.6
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 441 VRISTAQNKYSA--LNHALDRNQISFQISSFWHEIRTNKFRY 322
VR N YS+ LN LD N S++I ++W+ I T+KF Y
Sbjct: 122 VRNRYNHNNYSSTDLNGELDNND-SYEIGNYWNFIITDKFSY 162
>sp|Q5PKD5|OMPL_SALPA Porin ompL precursor
Length = 230
Score = 30.4 bits (67), Expect = 3.6
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 441 VRISTAQNKYSA--LNHALDRNQISFQISSFWHEIRTNKFRY 322
VR N YS+ LN LD N S++I ++W+ I T+KF Y
Sbjct: 122 VRNRYNHNNYSSTDLNGELDNND-SYEIGNYWNFIITDKFSY 162
>sp|P67452|EX7L_STRP1 Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
sp|P67453|EX7L_STRP3 Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
Length = 446
Score = 30.0 bits (66), Expect = 4.7
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -2
Query: 528 DLIRQKIGPINTSIINTTQDR*YRLE*IFVRISTAQNKYSALNHALDRNQISFQISSFWH 349
D QKI ++ +++NT +D R+S+A+ L+HAL +Q+ +I +
Sbjct: 310 DAYLQKIDRLSMTLMNTMKD----------RLSSAKENKVQLDHALANSQLQTKIERYQD 359
Query: 348 EIRTNK 331
+ T K
Sbjct: 360 RVATAK 365
>sp|Q5XB25|EX7L_STRP6 Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
sp|Q8P075|EX7L_STRP8 Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
Length = 446
Score = 30.0 bits (66), Expect = 4.7
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -2
Query: 528 DLIRQKIGPINTSIINTTQDR*YRLE*IFVRISTAQNKYSALNHALDRNQISFQISSFWH 349
D QKI ++ +++NT +D R+S+A+ L+HAL +Q+ +I +
Sbjct: 310 DAYLQKIDRLSMTLMNTMKD----------RLSSAKENKVQLDHALANSQLQTKIERYQD 359
Query: 348 EIRTNK 331
+ T K
Sbjct: 360 RVATAK 365
>sp|Q8X8F2|OMPL_ECO57 Porin ompL precursor
Length = 230
Score = 30.0 bits (66), Expect = 4.7
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 441 VRISTAQNKYSA--LNHALDRNQISFQISSFWHEIRTNKFRY 322
VR N YS+ LN LD N S++I ++W+ I T+KF Y
Sbjct: 122 VRNRFNHNNYSSTDLNGDLDNND-SYEIGNYWNFIITDKFSY 162
>sp|Q8NS78|RF2_CORGL Peptide chain release factor 2 (RF-2)
Length = 368
Score = 29.6 bits (65), Expect = 6.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 255 LIQDIDGDISVHREPLADLTALVDHAQINAPL 160
L ++ DGD S+ E LADL +L+D ++ L
Sbjct: 84 LAEEEDGDTSIAEEELADLRSLIDALEVKTML 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,803,211
Number of Sequences: 369166
Number of extensions: 1355311
Number of successful extensions: 3637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3636
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)