Planaria EST Database


DrC_01619

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01619
         (601 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19096|FAS_MOUSE  Fatty acid synthase [Includes: [Acyl-ca...    30   3.6  
sp|Q8Z2T0|OMPL_SALTI  Porin ompL precursor                         30   3.6  
sp|Q9L7R3|OMPL_SALTY  Porin ompL precursor                         30   3.6  
sp|Q5PKD5|OMPL_SALPA  Porin ompL precursor                         30   3.6  
sp|P67452|EX7L_STRP1  Probable exodeoxyribonuclease VII larg...    30   4.7  
sp|Q5XB25|EX7L_STRP6  Probable exodeoxyribonuclease VII larg...    30   4.7  
sp|Q8X8F2|OMPL_ECO57  Porin ompL precursor                         30   4.7  
sp|Q8NS78|RF2_CORGL  Peptide chain release factor 2 (RF-2)         30   6.1  
>sp|P19096|FAS_MOUSE Fatty acid synthase [Includes: [Acyl-carrier-protein]
            S-acetyltransferase ; [Acyl-carrier-protein]
            S-malonyltransferase ; 3-oxoacyl-[acyl-carrier-protein]
            synthase ; 3-oxoacyl-[acyl-carrier-protein] reductase ;
            3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase ;
            Enoyl-[acyl-carrier-protein] reductase ;
            Oleoyl-[acyl-carrier-protein] hydrolase ]
          Length = 2504

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -2

Query: 438  RISTAQNKYSALNHALDRNQISFQISSFWHEIR 340
            R++ + +  +  +H+LDR ++SF   SF+H++R
Sbjct: 2389 RVAASVDLITKSHHSLDRRELSFAAVSFYHKLR 2421
>sp|Q8Z2T0|OMPL_SALTI Porin ompL precursor
          Length = 230

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 441 VRISTAQNKYSA--LNHALDRNQISFQISSFWHEIRTNKFRY 322
           VR     N YS+  LN  LD N  S++I ++W+ I T+KF Y
Sbjct: 122 VRNRYNHNNYSSTDLNGELDNND-SYEIGNYWNFIITDKFSY 162
>sp|Q9L7R3|OMPL_SALTY Porin ompL precursor
          Length = 230

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 441 VRISTAQNKYSA--LNHALDRNQISFQISSFWHEIRTNKFRY 322
           VR     N YS+  LN  LD N  S++I ++W+ I T+KF Y
Sbjct: 122 VRNRYNHNNYSSTDLNGELDNND-SYEIGNYWNFIITDKFSY 162
>sp|Q5PKD5|OMPL_SALPA Porin ompL precursor
          Length = 230

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 441 VRISTAQNKYSA--LNHALDRNQISFQISSFWHEIRTNKFRY 322
           VR     N YS+  LN  LD N  S++I ++W+ I T+KF Y
Sbjct: 122 VRNRYNHNNYSSTDLNGELDNND-SYEIGNYWNFIITDKFSY 162
>sp|P67452|EX7L_STRP1 Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
           large subunit)
 sp|P67453|EX7L_STRP3 Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
           large subunit)
          Length = 446

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -2

Query: 528 DLIRQKIGPINTSIINTTQDR*YRLE*IFVRISTAQNKYSALNHALDRNQISFQISSFWH 349
           D   QKI  ++ +++NT +D          R+S+A+     L+HAL  +Q+  +I  +  
Sbjct: 310 DAYLQKIDRLSMTLMNTMKD----------RLSSAKENKVQLDHALANSQLQTKIERYQD 359

Query: 348 EIRTNK 331
            + T K
Sbjct: 360 RVATAK 365
>sp|Q5XB25|EX7L_STRP6 Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
           large subunit)
 sp|Q8P075|EX7L_STRP8 Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
           large subunit)
          Length = 446

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -2

Query: 528 DLIRQKIGPINTSIINTTQDR*YRLE*IFVRISTAQNKYSALNHALDRNQISFQISSFWH 349
           D   QKI  ++ +++NT +D          R+S+A+     L+HAL  +Q+  +I  +  
Sbjct: 310 DAYLQKIDRLSMTLMNTMKD----------RLSSAKENKVQLDHALANSQLQTKIERYQD 359

Query: 348 EIRTNK 331
            + T K
Sbjct: 360 RVATAK 365
>sp|Q8X8F2|OMPL_ECO57 Porin ompL precursor
          Length = 230

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 441 VRISTAQNKYSA--LNHALDRNQISFQISSFWHEIRTNKFRY 322
           VR     N YS+  LN  LD N  S++I ++W+ I T+KF Y
Sbjct: 122 VRNRFNHNNYSSTDLNGDLDNND-SYEIGNYWNFIITDKFSY 162
>sp|Q8NS78|RF2_CORGL Peptide chain release factor 2 (RF-2)
          Length = 368

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 255 LIQDIDGDISVHREPLADLTALVDHAQINAPL 160
           L ++ DGD S+  E LADL +L+D  ++   L
Sbjct: 84  LAEEEDGDTSIAEEELADLRSLIDALEVKTML 115
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,803,211
Number of Sequences: 369166
Number of extensions: 1355311
Number of successful extensions: 3637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3636
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)