Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01611
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7WK83|CLPP_BORBR ATP-dependent Clp protease proteolytic... 31 5.0
sp|Q5GS83|CLPP_WOLTR ATP-dependent Clp protease proteolytic... 30 6.5
sp|Q8PBY6|CLPP_XANCP ATP-dependent Clp protease proteolytic... 30 8.5
sp|Q5H434|CLPP_XANOR ATP-dependent Clp protease proteolytic... 30 8.5
sp|O51556|CLPP1_BORBU ATP-dependent Clp protease proteolyti... 30 8.5
sp|Q73I59|CLPP_WOLPM ATP-dependent Clp protease proteolytic... 30 8.5
>sp|Q7WK83|CLPP_BORBR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
sp|Q7W8X2|CLPP_BORPA ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
sp|Q7VXI7|CLPP_BORPE ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 217
Score = 30.8 bits (68), Expect = 5.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
+Y RL+RER + GPVND ++ QL+
Sbjct: 41 IYSRLLRERLIFLVGPVNDNTANLVVAQLL 70
>sp|Q5GS83|CLPP_WOLTR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 208
Score = 30.4 bits (67), Expect = 6.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
+Y RL++ER + GPV D M ++ QL+
Sbjct: 20 IYSRLVKERIIFVTGPVEDNMASVIVAQLL 49
>sp|Q8PBY6|CLPP_XANCP ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 208
Score = 30.0 bits (66), Expect = 8.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
+Y RL++ER + GP++D M ++ QL+
Sbjct: 27 IYSRLLKERLIFLVGPIDDHMANVIVAQLL 56
>sp|Q5H434|CLPP_XANOR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
sp|Q8PNI5|CLPP_XANAC ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 208
Score = 30.0 bits (66), Expect = 8.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
+Y RL++ER + GP++D M ++ QL+
Sbjct: 27 IYSRLLKERLIFLVGPIDDHMANVIVAQLL 56
>sp|O51556|CLPP1_BORBU ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
1)
Length = 197
Score = 30.0 bits (66), Expect = 8.5
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +1
Query: 511 ELTSNY-----LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
E T NY +Y RL+RER + +G +ND + +I QL+
Sbjct: 13 ENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLL 53
>sp|Q73I59|CLPP_WOLPM ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 208
Score = 30.0 bits (66), Expect = 8.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
+Y RL++ER + GP+ D M ++ QL+
Sbjct: 20 IYSRLVKERIIFVTGPIEDNMASVIVAQLL 49
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,284,223
Number of Sequences: 369166
Number of extensions: 1385541
Number of successful extensions: 2827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2809
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)