Planaria EST Database


DrC_01611

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01611
         (856 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7WK83|CLPP_BORBR  ATP-dependent Clp protease proteolytic...    31   5.0  
sp|Q5GS83|CLPP_WOLTR  ATP-dependent Clp protease proteolytic...    30   6.5  
sp|Q8PBY6|CLPP_XANCP  ATP-dependent Clp protease proteolytic...    30   8.5  
sp|Q5H434|CLPP_XANOR  ATP-dependent Clp protease proteolytic...    30   8.5  
sp|O51556|CLPP1_BORBU  ATP-dependent Clp protease proteolyti...    30   8.5  
sp|Q73I59|CLPP_WOLPM  ATP-dependent Clp protease proteolytic...    30   8.5  
>sp|Q7WK83|CLPP_BORBR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
 sp|Q7W8X2|CLPP_BORPA ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
 sp|Q7VXI7|CLPP_BORPE ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
          Length = 217

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
           +Y RL+RER +   GPVND     ++ QL+
Sbjct: 41  IYSRLLRERLIFLVGPVNDNTANLVVAQLL 70
>sp|Q5GS83|CLPP_WOLTR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
          Length = 208

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
           +Y RL++ER +   GPV D M   ++ QL+
Sbjct: 20  IYSRLVKERIIFVTGPVEDNMASVIVAQLL 49
>sp|Q8PBY6|CLPP_XANCP ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
          Length = 208

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
           +Y RL++ER +   GP++D M   ++ QL+
Sbjct: 27  IYSRLLKERLIFLVGPIDDHMANVIVAQLL 56
>sp|Q5H434|CLPP_XANOR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
 sp|Q8PNI5|CLPP_XANAC ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
          Length = 208

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
           +Y RL++ER +   GP++D M   ++ QL+
Sbjct: 27  IYSRLLKERLIFLVGPIDDHMANVIVAQLL 56
>sp|O51556|CLPP1_BORBU ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
           1)
          Length = 197

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = +1

Query: 511 ELTSNY-----LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
           E T NY     +Y RL+RER +  +G +ND   + +I QL+
Sbjct: 13  ENTGNYERVFDIYSRLLRERIIFLSGEINDPKADTVIAQLL 53
>sp|Q73I59|CLPP_WOLPM ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
          Length = 208

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 529 LYKRLIRERPLGHAGPVNDEMPECLIMQLM 618
           +Y RL++ER +   GP+ D M   ++ QL+
Sbjct: 20  IYSRLVKERIIFVTGPIEDNMASVIVAQLL 49
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,284,223
Number of Sequences: 369166
Number of extensions: 1385541
Number of successful extensions: 2827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2809
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)