Planaria EST Database


DrC_01601

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01601
         (668 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CQ49|NCBP2_MOUSE  Nuclear cap binding protein subunit 2...   202   6e-52
sp|P52298|NCBP2_HUMAN  Nuclear cap binding protein subunit 2...   202   8e-52
sp|P52299|NCBP2_XENLA  Nuclear cap binding protein subunit 2...   194   2e-49
sp|Q14011|CIRBP_HUMAN  Cold-inducible RNA-binding protein (G...    61   2e-09
sp|P60825|CIRBP_RAT  Cold-inducible RNA-binding protein (Gly...    61   3e-09
sp|P49313|ROC1_NICPL  30 kDa ribonucleoprotein, chloroplast ...    59   9e-09
sp|P27476|NSR1_YEAST  Nuclear localization sequence binding ...    58   3e-08
sp|Q08935|ROC1_NICSY  29 kDa ribonucleoprotein A, chloroplas...    57   4e-08
sp|P78795|IF34_SCHPO  Probable eukaryotic translation initia...    56   1e-07
sp|Q9Y4C8|RBM19_HUMAN  Probable RNA-binding protein 19 (RNA-...    55   2e-07
>sp|Q9CQ49|NCBP2_MOUSE Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding
           protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 156

 Score =  202 bits (514), Expect = 6e-52
 Identities = 93/140 (66%), Positives = 111/140 (79%)
 Frame = +2

Query: 101 LSSYRDQQFKGSRNEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKF 280
           LS YRDQ F+G   EQEK L  SCTLY+GNLSF+T EEQI+ELFS++G +K++IMGLDK 
Sbjct: 17  LSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM 76

Query: 281 KKTPCGFCFVEYYNRDQAENAVCYINGTRLDDRVIRTDWDAGFKENRQFGRGRTGGQVRD 460
           KKT CGFCFVEYY+R  AENA+ YINGTRLDDR+IRTDWDAGFKE RQ+GRGR+GGQVRD
Sbjct: 77  KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 136

Query: 461 EFXXXXXXXXXXXXKIVQQK 520
           E+            K+ Q++
Sbjct: 137 EYREDYDAGRGGYGKLAQKQ 156
>sp|P52298|NCBP2_HUMAN Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding
           protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
           protein 1) (NIP1)
          Length = 156

 Score =  202 bits (513), Expect = 8e-52
 Identities = 93/140 (66%), Positives = 110/140 (78%)
 Frame = +2

Query: 101 LSSYRDQQFKGSRNEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKF 280
           LS YRDQ F+G   EQEK L  SCTLY+GNLSF+T EEQI+ELFS++G +K++IMGLDK 
Sbjct: 17  LSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM 76

Query: 281 KKTPCGFCFVEYYNRDQAENAVCYINGTRLDDRVIRTDWDAGFKENRQFGRGRTGGQVRD 460
           KKT CGFCFVEYY+R  AENA+ YINGTRLDDR+IRTDWDAGFKE RQ+GRGR+GGQVRD
Sbjct: 77  KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 136

Query: 461 EFXXXXXXXXXXXXKIVQQK 520
           E+            K+ Q +
Sbjct: 137 EYRQDYDAGRGGYGKLAQNQ 156
>sp|P52299|NCBP2_XENLA Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding
           protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 148

 Score =  194 bits (492), Expect = 2e-49
 Identities = 89/138 (64%), Positives = 108/138 (78%)
 Frame = +2

Query: 101 LSSYRDQQFKGSRNEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKF 280
           LS YRDQ F+G+R++QE  L  SCTLY+GNLSF+T EEQI ELFS++G VKR++MGLDK 
Sbjct: 9   LSQYRDQHFRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKV 68

Query: 281 KKTPCGFCFVEYYNRDQAENAVCYINGTRLDDRVIRTDWDAGFKENRQFGRGRTGGQVRD 460
           KKT CGFCFVEYY R  A  A+ +INGTRLDDR++RTDWDAGFKE RQ+GRG++GGQVRD
Sbjct: 69  KKTACGFCFVEYYTRADAGTAMRFINGTRLDDRIVRTDWDAGFKEGRQYGRGKSGGQVRD 128

Query: 461 EFXXXXXXXXXXXXKIVQ 514
           E+            K+VQ
Sbjct: 129 EYRQDYDAGRGGYGKVVQ 146
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein (Glycine-rich RNA-binding
           protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 33/91 (36%), Positives = 53/91 (58%)
 Frame = +2

Query: 176 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKFKKTPCGFCFVEYYNRDQAENAVCYI 355
           L++G LSF T E+ + ++FS+ G++  V++  D+  +   GF FV + N D A++A+  +
Sbjct: 8   LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 356 NGTRLDDRVIRTDWDAGFKENRQFGRGRTGG 448
           NG  +D R IR D      +NR   RG  GG
Sbjct: 68  NGKSVDGRQIRVDQAGKSSDNR--SRGYRGG 96
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein (Glycine-rich RNA-binding
           protein CIRP) (A18 hnRNP)
 sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein (Glycine-rich RNA-binding
           protein CIRP) (A18 hnRNP)
 sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein (Glycine-rich RNA-binding
           protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 33/91 (36%), Positives = 53/91 (58%)
 Frame = +2

Query: 176 LYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKFKKTPCGFCFVEYYNRDQAENAVCYI 355
           L++G LSF T E+ + ++FS+ G++  V++  D+  +   GF FV + N D A++A+  +
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 356 NGTRLDDRVIRTDWDAGFKENRQFGRGRTGG 448
           NG  +D R IR D      +NR   RG  GG
Sbjct: 68  NGKSVDGRQIRVDQAGKSSDNR--SRGYRGG 96
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)
          Length = 279

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%)
 Frame = +2

Query: 71  RLIKKISTGGLSSYRDQQFKGSRNEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKV 250
           R ++K++        D +      E+E+       +++GNL F      + ELF RAG V
Sbjct: 54  RFVRKVTLPDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNV 113

Query: 251 KRVIMGLDKFKKTPCGFCFVEYYNRDQAENAVCYINGTRLDDRVIRTD--------WDAG 406
           + V +  DK      GF FV   ++++ E A    NG  LD R +R +         ++ 
Sbjct: 114 EMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSS 173

Query: 407 FKENRQFGRGRTGG 448
           F+EN  F  G  GG
Sbjct: 174 FRENSSFRGGSRGG 187

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 30/108 (27%), Positives = 51/108 (47%)
 Frame = +2

Query: 104 SSYRDQQFKGSRNEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKFK 283
           SS+R+       +    +  +S  +Y+GNL++   ++ +  LFS  GKV    +  D+  
Sbjct: 172 SSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDS 231

Query: 284 KTPCGFCFVEYYNRDQAENAVCYINGTRLDDRVIRTDWDAGFKENRQF 427
               GF FV Y + ++  NA+  ++G  L+ R IR          RQF
Sbjct: 232 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279
>sp|P27476|NSR1_YEAST Nuclear localization sequence binding protein (P67)
          Length = 414

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
 Frame = +2

Query: 167 SCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKFKKTPCGFCFVEYYNRDQAENAV 346
           S TL++GNLSF    + I+ELF++ G+V  V +      + P GF +V++ N + A+ A+
Sbjct: 266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325

Query: 347 CYINGTRLDDRVIRTDW-------DAGFKENRQFGRGRTGGQ 451
             + G  +D+R +R D+       D G   +R FG GR GG+
Sbjct: 326 DALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFG-GRGGGR 366
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)
          Length = 273

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
 Frame = +2

Query: 71  RLIKKISTGGLSSYRDQQFKGSRNEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKV 250
           R ++K++        D +      E+E+       +++GNL F      + ELF RAG V
Sbjct: 54  RFVRKVTLSDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNV 113

Query: 251 KRVIMGLDKFKKTPCGFCFVEYYNRDQAENAVCYINGTRLDDRVIRTDW--DAGFKENRQ 424
           + V +  DK      GF FV   ++++ E A    NG  LD R +R +       +EN  
Sbjct: 114 EMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSS 173

Query: 425 FGRGRTGG 448
           F  G  GG
Sbjct: 174 FRGGSRGG 181

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 44/88 (50%)
 Frame = +2

Query: 164 NSCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKFKKTPCGFCFVEYYNRDQAENA 343
           +S  +Y+GNL++   ++ +  LFS  GKV    +  D+      GF FV Y + ++  NA
Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 245

Query: 344 VCYINGTRLDDRVIRTDWDAGFKENRQF 427
           +  ++G  L+ R IR          RQF
Sbjct: 246 IESLDGVDLNGRAIRVSPAEARPPRRQF 273
>sp|P78795|IF34_SCHPO Probable eukaryotic translation initiation factor 3 RNA-binding
           subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
           (Translation initiation factor eIF3, p33 subunit)
          Length = 282

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 34/94 (36%), Positives = 52/94 (55%)
 Frame = +2

Query: 116 DQQFKGSRNEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKFKKTPC 295
           D  FK  R++       S TL + NLS  TREE++ +LF R G ++RV +  DK      
Sbjct: 191 DSMFKRERDD-------SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243

Query: 296 GFCFVEYYNRDQAENAVCYINGTRLDDRVIRTDW 397
           GF FV YY+RD A  A   ++G   ++ ++R ++
Sbjct: 244 GFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEF 277
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 (RNA-binding motif protein 19)
          Length = 960

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
 Frame = +2

Query: 95  GGLSSYRDQQFKGSRNEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLD 274
           G  +S    + +    E+E+  L  CTL+I NL+F T EE++ E+FS+ G VK   +   
Sbjct: 705 GADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKK 764

Query: 275 KFKK---TPCGFCFVEYYNRDQAENAVCYINGTRLD 373
           K K       GF FVEY   +QA+ A+  + G  +D
Sbjct: 765 KNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVD 800

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 24/82 (29%), Positives = 43/82 (52%)
 Frame = +2

Query: 140 NEQEKALLNSCTLYIGNLSFFTREEQIWELFSRAGKVKRVIMGLDKFKKTPCGFCFVEYY 319
           NE+E+ L  S  L++ NL + + EE + +LFS+ G +  +   +D   K P GF F+ + 
Sbjct: 392 NEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFM 451

Query: 320 NRDQAENAVCYINGTRLDDRVI 385
             + A  A   ++G     R++
Sbjct: 452 FPEHAVKAYSEVDGQVFQGRML 473
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,813,462
Number of Sequences: 369166
Number of extensions: 1230573
Number of successful extensions: 3081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3054
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)