Planaria EST Database


DrC_01600

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01600
         (889 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10394|POL4_DROME  Retrovirus-related Pol polyprotein fro...   114   5e-25
sp|P23074|POL_SFV1  Pol polyprotein [Contains: Protease ; Re...   110   5e-24
sp|P27401|POL_SFV3L  Pol polyprotein [Contains: Protease ; R...   103   5e-22
sp|P14350|POL_FOAMV  Pol polyprotein [Contains: Reverse tran...   100   7e-21
sp|P03355|POL_MLVMO  Pol polyprotein [Contains: Protease ; R...    99   1e-20
sp|Q05654|RT21_SCHPO  Retrotransposable element Tf2 155 kDa ...    97   8e-20
sp|Q9C0R2|RT22_SCHPO  Retrotransposable element Tf2 155 kDa ...    97   8e-20
sp|Q9UR07|RT23_SCHPO  Retrotransposable element Tf2 155 kDa ...    97   8e-20
sp|P26808|POL_MLVFP  Pol polyprotein [Contains: Protease ; R...    96   1e-19
sp|P26809|POL_MLVFF  Pol polyprotein [Contains: Protease ; R...    94   4e-19
>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 [Contains:
            Protease ; Reverse transcriptase ; Endonuclease]
          Length = 1237

 Score =  114 bits (284), Expect = 5e-25
 Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 26/313 (8%)
 Frame = +1

Query: 28   HPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQKNKVTKNTK-PEKVNFPSSKAFETI 204
            H G   T   +   Y W NM + IK +V+ C  CQK K TK+TK P  +      AF+ +
Sbjct: 909  HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRV 968

Query: 205  HVDIVGPLPPND-GYKYLLTMIDRKTNWFEVIPLKEISTAIICKNIEFNWFARYGQPKVL 381
             VD +GPLP ++ G +Y +T+I   T +   IP+   S   + K I  ++  +YG  K  
Sbjct: 969  VVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTF 1028

Query: 382  ITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRT-IANDRT-W 555
            ITD G ++++ +   LC    +K   + A++ Q  G +ER HRTL + +R+ I+ D+T W
Sbjct: 1029 ITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDW 1088

Query: 556  LAKLPQTLIGLRXXXXXXXXXXXXXLVLGK-----QXXXXXXXXXXXXGVD----KTKYC 708
               L   +                 LV G+     +             +D    ++KY 
Sbjct: 1089 DVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKY- 1147

Query: 709  GNETRHNEPRSILKESKPQTQLTTDY------------ALVKKPFTKGFETKYLGPYKLT 852
              E  +   R +L+  K + +   D              L++       + KY GPYK+ 
Sbjct: 1148 RLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRNEVGHKLDFKYTGPYKIE 1207

Query: 853  KI-DKNVATLIIN 888
             I D N  TL+ N
Sbjct: 1208 SIGDNNNITLLTN 1220
>sp|P23074|POL_SFV1 Pol polyprotein [Contains: Protease ; Reverse
            transcriptase/ribonuclease H (RT); Integrase (IN)]
          Length = 1161

 Score =  110 bits (275), Expect = 5e-24
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
 Frame = +1

Query: 4    ISQIHNNHHPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQKNKVTKNTKPEKVN-FP 180
            IS  HN  H G   T+  + +KY WPN+R+D+   ++ C  C     T  T P  +    
Sbjct: 820  ISTAHNIAHTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVK 879

Query: 181  SSKAFETIHVDIVGPLPPNDGYKYLLTMIDRKTNWFEVIPLKEISTAIICKNIEFNWFAR 360
              K F+  ++D +GPLPP++GY ++L ++D  T +  + P K  ST+   K +  N    
Sbjct: 880  PLKPFDKFYIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTS 937

Query: 361  YGQPKVLITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLR--T 534
               PKVL +DQG  F S  F        ++   +  Y+PQ +GK+ER +  +K+ L    
Sbjct: 938  IAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLL 997

Query: 535  IANDRTWLAKLPQTLIGL 588
            I     W   LP   + L
Sbjct: 998  IGRPAKWYDLLPVVQLAL 1015
>sp|P27401|POL_SFV3L Pol polyprotein [Contains: Protease ; Reverse
            transcriptase/ribonuclease H (RT); Integrase (IN)]
          Length = 1157

 Score =  103 bits (258), Expect = 5e-22
 Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
 Frame = +1

Query: 4    ISQIHNNHHPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQ-KNKVTKNTKPEKVNFP 180
            I Q HN  H G   T+  + +KY WPN+R+D+   ++ C  C   N  T    P      
Sbjct: 822  ILQAHNIAHTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNAATLAAPPILRPER 881

Query: 181  SSKAFETIHVDIVGPLPPNDGYKYLLTMIDRKTNWFEVIPLKEISTAIICKNIEFNWFAR 360
              K F+   +D +GPLPP++GY ++L ++D  T +  + P K  ST+   K +  N    
Sbjct: 882  PVKPFDKFFIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTS 939

Query: 361  YGQPKVLITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRTIA 540
               PKV+ +DQG  F S  F        ++   +  Y+PQ +GK+ER +  +K+ L  + 
Sbjct: 940  IAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLL 999

Query: 541  NDR--TWLAKLPQTLIGL 588
              R   W   LP   + L
Sbjct: 1000 VGRPAKWYDLLPVVQLAL 1017
>sp|P14350|POL_FOAMV Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H (RT);
            Integrase (IN)]
          Length = 886

 Score =  100 bits (248), Expect = 7e-21
 Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
 Frame = +1

Query: 4    ISQIHNNHHPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQ-KNKVTKNTKPEKVNFP 180
            + Q HN  H G + T   I N Y WPNMR+D+   +  C  C   N   K + P      
Sbjct: 612  VLQAHNLAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRPDR 671

Query: 181  SSKAFETIHVDIVGPLPPNDGYKYLLTMIDRKTNWFEVIPLKEISTAIICKNIEFNWFAR 360
              K F+   +D +GPLPP+ GY Y+L ++D  T +  + P K  ST+   K++  N    
Sbjct: 672  PQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSL--NVLTS 729

Query: 361  YGQPKVLITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRTIA 540
               PKV+ +DQG  F S  F +      +    +  Y+PQ   K+ER +  +K+ L  + 
Sbjct: 730  IAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLL 789

Query: 541  NDR--TWLAKLPQTLIGL 588
              R   W   LP   + L
Sbjct: 790  VGRPTKWYDLLPVVQLAL 807
>sp|P03355|POL_MLVMO Pol polyprotein [Contains: Protease ; Reverse
            transcriptase/ribonuclease H (RT); Integrase (IN)]
          Length = 1199

 Score = 99.4 bits (246), Expect = 1e-20
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 3/187 (1%)
 Frame = +1

Query: 40   KVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQKNKVTKNTKPEKVNFPSSKAFETIHVDIV 219
            K   E  H+ Y   N  + +KN  +TC +C +   +K+   +       +      +D  
Sbjct: 859  KALLERSHSPYYMLNRDRTLKNITETCKACAQVNASKSAVKQGTRVRGHRPGTHWEIDFT 918

Query: 220  GPLPPNDGYKYLLTMIDRKTNWFEVIPLKEISTAIICKNIEFNWFARYGQPKVLITDQGR 399
               P   GYKYLL  ID  + W E  P K+ +  ++ K +    F R+G P+VL TD G 
Sbjct: 919  EIKPGLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGP 978

Query: 400  QFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRTI---ANDRTWLAKLP 570
             F S++ + + D   +      AY PQ +G++ER++RT+K++L  +      R W+  LP
Sbjct: 979  AFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLP 1038

Query: 571  QTLIGLR 591
              L   R
Sbjct: 1039 LALYRAR 1045
>sp|Q05654|RT21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
          Length = 1333

 Score = 96.7 bits (239), Expect = 8e-20
 Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 6/183 (3%)
 Frame = +1

Query: 28   HPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQKNKVTKNTKPE---KVNFPSSKAFE 198
            HPG ++   II  ++ W  +R+ I+ +V+ C +CQ NK ++N KP    +   PS + +E
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINK-SRNHKPYGPLQPIPPSERPWE 985

Query: 199  TIHVDIVGPLPPNDGYKYLLTMIDRKTNWFEVIPL-KEISTAIICKNIEFNWFARYGQPK 375
            ++ +D +  LP + GY  L  ++DR +    ++P  K I+     +  +    A +G PK
Sbjct: 986  SLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPK 1045

Query: 376  VLITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRTI--ANDR 549
             +I D    F S+ +K    +YN     ++ Y PQ +G+ ER ++T+++ LR +   +  
Sbjct: 1046 EIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105

Query: 550  TWL 558
            TW+
Sbjct: 1106 TWV 1108
>sp|Q9C0R2|RT22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
          Length = 1333

 Score = 96.7 bits (239), Expect = 8e-20
 Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 6/183 (3%)
 Frame = +1

Query: 28   HPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQKNKVTKNTKPE---KVNFPSSKAFE 198
            HPG ++   II  ++ W  +R+ I+ +V+ C +CQ NK ++N KP    +   PS + +E
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINK-SRNHKPYGPLQPIPPSERPWE 985

Query: 199  TIHVDIVGPLPPNDGYKYLLTMIDRKTNWFEVIPL-KEISTAIICKNIEFNWFARYGQPK 375
            ++ +D +  LP + GY  L  ++DR +    ++P  K I+     +  +    A +G PK
Sbjct: 986  SLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPK 1045

Query: 376  VLITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRTI--ANDR 549
             +I D    F S+ +K    +YN     ++ Y PQ +G+ ER ++T+++ LR +   +  
Sbjct: 1046 EIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105

Query: 550  TWL 558
            TW+
Sbjct: 1106 TWV 1108
>sp|Q9UR07|RT23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
          Length = 1333

 Score = 96.7 bits (239), Expect = 8e-20
 Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 6/183 (3%)
 Frame = +1

Query: 28   HPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQKNKVTKNTKPE---KVNFPSSKAFE 198
            HPG ++   II  ++ W  +R+ I+ +V+ C +CQ NK ++N KP    +   PS + +E
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINK-SRNHKPYGPLQPIPPSERPWE 985

Query: 199  TIHVDIVGPLPPNDGYKYLLTMIDRKTNWFEVIPL-KEISTAIICKNIEFNWFARYGQPK 375
            ++ +D +  LP + GY  L  ++DR +    ++P  K I+     +  +    A +G PK
Sbjct: 986  SLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPK 1045

Query: 376  VLITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRTI--ANDR 549
             +I D    F S+ +K    +YN     ++ Y PQ +G+ ER ++T+++ LR +   +  
Sbjct: 1046 EIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105

Query: 550  TWL 558
            TW+
Sbjct: 1106 TWV 1108
>sp|P26808|POL_MLVFP Pol polyprotein [Contains: Protease ; Reverse
            transcriptase/ribonuclease H (RT); Integrase (IN)]
          Length = 1204

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 3/200 (1%)
 Frame = +1

Query: 1    YISQIHNNHHPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQKNKVTKNTKPEKVNFP 180
            ++ Q+ +      K   E  ++ Y   N  + +K+  +TC +C +   +K+   +     
Sbjct: 851  FLHQLTHLSFSKTKALLERSYSPYYMLNRDRTLKDITETCKACAQVNASKSAVKQGTRVR 910

Query: 181  SSKAFETIHVDIVGPLPPNDGYKYLLTMIDRKTNWFEVIPLKEISTAIICKNIEFNWFAR 360
              +      +D     P   GYKYLL  +D  + W E  P K+ +  ++ K +    F R
Sbjct: 911  GHRPGTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPR 970

Query: 361  YGQPKVLITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRTI- 537
            +G P+VL TD G  F S++ + + D   V      AY PQ +G++ER++RT+K++L  + 
Sbjct: 971  FGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLT 1030

Query: 538  --ANDRTWLAKLPQTLIGLR 591
                 R W+  LP  L   R
Sbjct: 1031 LATGSRDWVLLLPLALYRAR 1050
>sp|P26809|POL_MLVFF Pol polyprotein [Contains: Protease ; Reverse
            transcriptase/ribonuclease H (RT); Integrase (IN)]
          Length = 1204

 Score = 94.4 bits (233), Expect = 4e-19
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 3/200 (1%)
 Frame = +1

Query: 1    YISQIHNNHHPGNKVTYEIIHNKYIWPNMRQDIKNFVKTCSSCQKNKVTKNTKPEKVNFP 180
            ++ Q+ +      K   E  +  Y   N  + +K+  +TC +C +   +K+   +     
Sbjct: 851  FLHQLTHLSFSKTKALLERNYCPYYMLNRDRTLKDITETCQACAQVNASKSAVKQGTRVR 910

Query: 181  SSKAFETIHVDIVGPLPPNDGYKYLLTMIDRKTNWFEVIPLKEISTAIICKNIEFNWFAR 360
              +      +D     P   GYKYLL  ID  + W E  P K+ +  ++ K +    F R
Sbjct: 911  GHRPGTHWEIDFTEVKPGLYGYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPR 970

Query: 361  YGQPKVLITDQGRQFESELFKKLCDRYNVKKSRTIAYNPQCNGKIERLHRTLKQSLRTI- 537
            +G P+VL TD G  F S++ + + D   V      AY PQ +G++ER++RT+K++L  + 
Sbjct: 971  FGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLT 1030

Query: 538  --ANDRTWLAKLPQTLIGLR 591
                 R W+  LP  L   R
Sbjct: 1031 LATGSRDWVLLLPLALYRAR 1050
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,143,491
Number of Sequences: 369166
Number of extensions: 2040580
Number of successful extensions: 7855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7813
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)