Planaria EST Database


DrC_01585

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01585
         (832 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P215|POGK_HUMAN  Pogo transposable element with KRAB do...    45   2e-04
sp|Q80TC5|POGK_MOUSE  Pogo transposable element with KRAB do...    44   4e-04
>sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB domain (LST003/SLTP003)
          Length = 609

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = +2

Query: 59  MIPTRMTAYIQSLDLVINKPFKDYLRVKVNDY-IEHRMV*NQSGNFIKPNLTEIVQWVNN 235
           +IP  +T+ +Q LD+V+ KP  D +R + +++ +   +  + +GN  KP L   ++WV  
Sbjct: 494 IIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMV 553

Query: 236 SWDKITANCVANALRAGYLDKKYSFEECLL 325
           +W+ I++  +    +  ++      E+ +L
Sbjct: 554 AWNSISSESIVQGFKKCHISSNLEEEDDVL 583
>sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB domain
          Length = 607

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +2

Query: 59  MIPTRMTAYIQSLDLVINKPFKDYLRVKVNDY-IEHRMV*NQSGNFIKPNLTEIVQWVNN 235
           +IP  +T+ +Q LD+V+ KP  D +R + +++ +   +  + +GN  KP L   ++W+  
Sbjct: 494 IIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWIMV 553

Query: 236 SWDKITANCVANALRAGYLDKKYSFE 313
           +W+ I++  +    R  ++      E
Sbjct: 554 AWNSISSESIVQGFRKCHISSNLEDE 579
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,464,363
Number of Sequences: 369166
Number of extensions: 1646995
Number of successful extensions: 3405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3403
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)