Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01585
(832 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB do... 45 2e-04
sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB do... 44 4e-04
>sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB domain (LST003/SLTP003)
Length = 609
Score = 45.1 bits (105), Expect = 2e-04
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +2
Query: 59 MIPTRMTAYIQSLDLVINKPFKDYLRVKVNDY-IEHRMV*NQSGNFIKPNLTEIVQWVNN 235
+IP +T+ +Q LD+V+ KP D +R + +++ + + + +GN KP L ++WV
Sbjct: 494 IIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMV 553
Query: 236 SWDKITANCVANALRAGYLDKKYSFEECLL 325
+W+ I++ + + ++ E+ +L
Sbjct: 554 AWNSISSESIVQGFKKCHISSNLEEEDDVL 583
>sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB domain
Length = 607
Score = 44.3 bits (103), Expect = 4e-04
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 59 MIPTRMTAYIQSLDLVINKPFKDYLRVKVNDY-IEHRMV*NQSGNFIKPNLTEIVQWVNN 235
+IP +T+ +Q LD+V+ KP D +R + +++ + + + +GN KP L ++W+
Sbjct: 494 IIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWIMV 553
Query: 236 SWDKITANCVANALRAGYLDKKYSFE 313
+W+ I++ + R ++ E
Sbjct: 554 AWNSISSESIVQGFRKCHISSNLEDE 579
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,464,363
Number of Sequences: 369166
Number of extensions: 1646995
Number of successful extensions: 3405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3403
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)