Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01583
(828 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14119|ZN161_HUMAN Zinc finger protein 161 (Putative tra... 45 3e-04
sp|P16884|NFH_RAT Neurofilament triplet H protein (200 kDa ... 37 0.087
sp|P19246|NFH_MOUSE Neurofilament triplet H protein (200 kD... 35 0.33
sp|P15989|CO6A3_CHICK Collagen alpha 3(VI) chain precursor 33 1.3
sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 (N... 32 2.8
sp|P40277|H1C_CHITE Histone H1C 32 2.8
sp|Q8TLB8|YV19_METAC Hypothetical UPF0228 protein MA3119 31 3.6
sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dep... 31 4.8
>sp|Q14119|ZN161_HUMAN Zinc finger protein 161 (Putative transcription factor DB1)
Length = 516
Score = 44.7 bits (104), Expect = 3e-04
Identities = 19/51 (37%), Positives = 36/51 (70%)
Frame = +3
Query: 567 IVSSLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
I SS+S+ ++P + +A ++RSP+N+ S +N+ SP+N+ P+ + SPL+
Sbjct: 398 ITSSVSSETMSNPVTVAAAMSMRSPVNVSSAVNITSPMNIGHPVTITSPLS 448
Score = 42.0 bits (97), Expect = 0.002
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
SP + SA N+ SP+N+ P+ + SPL++ SPL L +P+N
Sbjct: 421 SPVNVSSAVNITSPMNIGHPVTITSPLSMTSPLTLTTPVN 460
Score = 37.4 bits (85), Expect = 0.051
Identities = 16/50 (32%), Positives = 33/50 (66%)
Frame = +3
Query: 576 SLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLNFG 725
+L+T F + S S+ + +P+ + + +++RSP+N+ S +N+ SP+N G
Sbjct: 391 TLTTPFSITSSV--SSETMSNPVTVAAAMSMRSPVNVSSAVNITSPMNIG 438
Score = 37.4 bits (85), Expect = 0.051
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = +3
Query: 597 TSPSALCSASNL----RSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
TSP L + NL +P+N+ P+ + SP+NL +P+ L +PLN
Sbjct: 450 TSPLTLTTPVNLPTPVTAPVNIAHPVTITSPMNLPTPMTLAAPLN 494
Score = 33.9 bits (76), Expect = 0.56
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 597 TSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
TSP ++ S L +P+NL +P+ +P+N+ P+ + SP+N
Sbjct: 444 TSPLSMTSPLTLTTPVNLPTPVT--APVNIAHPVTITSPMN 482
Score = 33.1 bits (74), Expect = 0.96
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 603 PSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNL 704
P+ + + N+ P+ + SP+NL +P+ L +PLN+
Sbjct: 462 PTPVTAPVNIAHPVTITSPMNLPTPMTLAAPLNI 495
Score = 32.3 bits (72), Expect = 1.6
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 597 TSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
TSP + + SPL++ SPL L +P+NL +P+ +P+N
Sbjct: 432 TSPMNIGHPVTITSPLSMTSPLTLTTPVNLPTPVT--APVN 470
>sp|P16884|NFH_RAT Neurofilament triplet H protein (200 kDa neurofilament protein)
(Neurofilament heavy polypeptide) (NF-H)
Length = 831
Score = 36.6 bits (83), Expect = 0.087
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
S A SP+ + S + ++SP+ +SP ++SP+ ++SP +SP+
Sbjct: 395 SPAEAKSPAEVKSPATVKSPVEAKSPAEVKSPVTVKSPAEAKSPV 439
Score = 35.4 bits (80), Expect = 0.19
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S + ++SP +SP +SP ++SP ++SP
Sbjct: 311 SPAVAKSPAEVKSPAEVKSPAEAKSPAEAKSPAEVKSPATVKSP 354
Score = 35.0 bits (79), Expect = 0.25
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+++ S +SP +SP ++SP ++SP+ +SP
Sbjct: 377 SPAEAKSPASVKSPGEAKSPAEAKSPAEVKSPATVKSPVEAKSP 420
Score = 34.7 bits (78), Expect = 0.33
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP S + ++SP+ ++SP +SP+ ++SP +++SP
Sbjct: 407 SPATVKSPVEAKSPAEVKSPVTVKSPAEAKSPVEVKSPASVKSP 450
Score = 33.9 bits (76), Expect = 0.56
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
S A SP S + +SP ++SP ++SP+ +SP ++SP+
Sbjct: 383 SPASVKSPGEAKSPAEAKSPAEVKSPATVKSPVEAKSPAEVKSPV 427
Score = 33.9 bits (76), Expect = 0.56
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 570 VSSLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
V + S A SP + S + +SP+ ++SP +++SP +SP +SP
Sbjct: 415 VEAKSPAEVKSPVTVKSPAEAKSPVEVKSPASVKSPSEAKSPAGAKSP 462
Score = 33.5 bits (75), Expect = 0.73
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
S A SP+ S ++++SP +SP +SP ++SP ++SP+
Sbjct: 371 SPAEAKSPAEAKSPASVKSPGEAKSPAEAKSPAEVKSPATVKSPV 415
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + +SP ++SP +SP ++SP ++SP
Sbjct: 287 SPAEAKSPAEAKSPAEAKSPAEVKSPAVAKSPAEVKSPAEVKSP 330
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + ++SP +SP ++SP ++SP +SP
Sbjct: 293 SPAEAKSPAEAKSPAEVKSPAVAKSPAEVKSPAEVKSPAEAKSP 336
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S + +SP ++SP ++SP +SP +SP
Sbjct: 299 SPAEAKSPAEVKSPAVAKSPAEVKSPAEVKSPAEAKSPAEAKSP 342
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + ++SP ++SP +SP +SP ++SP
Sbjct: 329 SPAEAKSPAEAKSPAEVKSPATVKSPGEAKSPAEAKSPAEVKSP 372
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S + ++SP +SP +SP ++SP +SP
Sbjct: 335 SPAEAKSPAEVKSPATVKSPGEAKSPAEAKSPAEVKSPAEAKSP 378
Score = 32.7 bits (73), Expect = 1.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
SP+++ S S +SP +SP +SP+ +SP +SP
Sbjct: 443 SPASVKSPSEAKSPAGAKSPAEAKSPVVAKSPAEAKSP 480
Score = 32.7 bits (73), Expect = 1.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLNFG 725
SP+ S + +SP +SP +SP+ ++SP +SP+ G
Sbjct: 491 SPAEAKSPAEAKSPAEAKSPAEAKSPVEVKSPEKAKSPVKEG 532
Score = 32.3 bits (72), Expect = 1.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP S + +SP ++SP +SP +SP +++SP
Sbjct: 347 SPATVKSPGEAKSPAEAKSPAEVKSPAEAKSPAEAKSPASVKSP 390
Score = 32.3 bits (72), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S + +SP +SP +++SP +SP +SP
Sbjct: 359 SPAEAKSPAEVKSPAEAKSPAEAKSPASVKSPGEAKSPAEAKSP 402
Score = 32.0 bits (71), Expect = 2.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 570 VSSLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
V+ S A SP + S ++++SP +SP +SP +SP+ +SP
Sbjct: 427 VTVKSPAEAKSPVEVKSPASVKSPSEAKSPAGAKSPAEAKSPVVAKSP 474
Score = 31.6 bits (70), Expect = 2.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
SP+ + S + +SP +SP ++SP ++SP +SP
Sbjct: 323 SPAEVKSPAEAKSPAEAKSPAEVKSPATVKSPGEAKSP 360
Score = 31.2 bits (69), Expect = 3.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
SP+ S ++SP +++SP +SP +SP +SP+
Sbjct: 431 SPAEAKSPVEVKSPASVKSPSEAKSPAGAKSPAEAKSPV 469
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A P+ S + +SP +SP +SP +SP+ ++SP
Sbjct: 479 SPAGAKPPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPVEVKSP 522
Score = 30.8 bits (68), Expect = 4.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 570 VSSLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
V + S A SP+ + +SP +SP +SP +SP +SP+
Sbjct: 469 VVAKSPAEAKSPAGAKPPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPV 517
>sp|P19246|NFH_MOUSE Neurofilament triplet H protein (200 kDa neurofilament protein)
(Neurofilament heavy polypeptide) (NF-H)
Length = 1087
Score = 34.7 bits (78), Expect = 0.33
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+A+ S +SP +SP +SP +SP+ ++SP
Sbjct: 724 SPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP 767
Score = 32.3 bits (72), Expect = 1.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + +SP +SP +SP +SP ++SP
Sbjct: 598 SPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSP 641
Score = 32.3 bits (72), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP S S +SP +SP +SP +SP ++SP
Sbjct: 634 SPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSP 677
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S +SP +SP +SP +SP +SP
Sbjct: 628 SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP 671
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S +SP +SP +SP ++SP +SP
Sbjct: 664 SPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSP 707
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S + +SP ++SP +SP ++SP +SP
Sbjct: 688 SPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 731
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP S S +SP +SP +SP +SP +SP
Sbjct: 580 SPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSP 623
Score = 31.6 bits (70), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
SPS S + +SP +SP +SP +SP +SP
Sbjct: 592 SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSP 629
Score = 31.6 bits (70), Expect = 2.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLNFG 725
S A SP S +SP +SP +SP+ ++SP ++P+ G
Sbjct: 730 SPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEG 777
Score = 31.2 bits (69), Expect = 3.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S +SP +SP +SP +SP +SP
Sbjct: 574 SPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP 617
Score = 31.2 bits (69), Expect = 3.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + +SP +SP +SP ++SP +SP
Sbjct: 604 SPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSP 647
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
SPS S + +SP +SP +SP ++SP +SP
Sbjct: 646 SPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSP 683
Score = 31.2 bits (69), Expect = 3.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + ++SP +SP +SP +SP ++SP
Sbjct: 658 SPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSP 701
Score = 31.2 bits (69), Expect = 3.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + ++SP +SP ++SP +SP ++SP
Sbjct: 682 SPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSP 725
Score = 30.8 bits (68), Expect = 4.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + +SP +SP ++SP +SP +SP
Sbjct: 610 SPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSP 653
Score = 30.8 bits (68), Expect = 4.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + +SP ++SP +SP +SP +SP
Sbjct: 616 SPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSP 659
Score = 30.8 bits (68), Expect = 4.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + ++SP +SP +SP +SP +SP
Sbjct: 622 SPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSP 665
Score = 30.8 bits (68), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
SP S + +SP +SP ++SP +SP ++SP
Sbjct: 676 SPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSP 713
Score = 30.8 bits (68), Expect = 4.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ + S +SP ++SP +SP ++SP +SP
Sbjct: 700 SPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSP 743
Score = 30.8 bits (68), Expect = 4.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
SP+A+ S + +SP ++SP +SP +SP +SP
Sbjct: 718 SPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSP 755
Score = 30.4 bits (67), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + +SP ++SP +SP +SP +SP
Sbjct: 652 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSP 695
Score = 30.0 bits (66), Expect = 8.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
S A SP+ S + ++SP +SP +SP +SP +SP
Sbjct: 568 SPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSP 611
>sp|P15989|CO6A3_CHICK Collagen alpha 3(VI) chain precursor
Length = 3137
Score = 32.7 bits (73), Expect = 1.3
Identities = 28/87 (32%), Positives = 35/87 (40%)
Frame = -3
Query: 724 PKFNGDRKFNGERKFNGERKFNGERKFNGERKFDAEHKADGEVPNAVESEETINVPKKIY 545
P NG + F G G R G R F GE+ E DG ++ EE
Sbjct: 2081 PGVNGTQGFQG---CPGHRGTKGSRGFPGEKGELGEMGLDG-----IDGEEGDKGLPGFS 2132
Query: 544 GERKFNGERKFNGERRFNGERKFNGER 464
GE+ F+G R G + GER G R
Sbjct: 2133 GEKGFSGRRGSKGAKGERGERGDRGLR 2159
>sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 (Na(+)/K(+)/Ca(2+)-exchange
protein 1) (Retinal rod Na-Ca+K exchanger)
Length = 1181
Score = 31.6 bits (70), Expect = 2.8
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 676 GERKFNGERKFNGERKFDAEHKADGEVPNAVESEETINVPKKIYGERKFNGERKFNGERR 497
GER+ E K + E + +AE K DG+ E E +K GE + G+ + GE
Sbjct: 727 GERETEAEGKKDEEGETEAERKEDGQ-----EEETETKGKEKQEGETESEGKDEQEGETE 781
Query: 496 FNG-ERKFNGERKAK 455
G E GE +A+
Sbjct: 782 AEGKEADHEGETEAE 796
>sp|P40277|H1C_CHITE Histone H1C
Length = 221
Score = 31.6 bits (70), Expect = 2.8
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 220 GTERRPFNGTERKPFNGTERQPFNASVKKPFNGEKKFNKTIEKVATTAT 74
G+ + P + K TE++P A+ K GEKK KTI K AT
Sbjct: 106 GSFKLPAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVKKTIAKKPKAAT 154
>sp|Q8TLB8|YV19_METAC Hypothetical UPF0228 protein MA3119
Length = 229
Score = 31.2 bits (69), Expect = 3.6
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 633 RSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
++P+N +P+N +P+N +P+N +P+N
Sbjct: 29 QAPINTSTPVNTSTPVNTSTPVNTSTPVN 57
Score = 30.0 bits (66), Expect = 8.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 627 NLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
N +P+N +P+N +P+N +P+N +P++
Sbjct: 33 NTSTPVNTSTPVNTSTPVNTSTPVNTSTPVS 63
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
Length = 629
Score = 30.8 bits (68), Expect = 4.8
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -3
Query: 718 FNGDRKFNGERKFNGERKFNGE---RKFNGERKFDAEHKADGEVPNAVESEETINVPKKI 548
F G+R+ G R F+GER+ G R+F+GER+ +G P +S
Sbjct: 578 FGGERR-EGGRNFSGERREGGRGDGRRFSGERR-------EGRAPRRDDST--------- 620
Query: 547 YGERKFNGE 521
G R+F G+
Sbjct: 621 -GRRRFGGD 628
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,012,297
Number of Sequences: 369166
Number of extensions: 957759
Number of successful extensions: 3662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)