Planaria EST Database


DrC_01583

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01583
         (828 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14119|ZN161_HUMAN  Zinc finger protein 161 (Putative tra...    45   3e-04
sp|P16884|NFH_RAT  Neurofilament triplet H protein (200 kDa ...    37   0.087
sp|P19246|NFH_MOUSE  Neurofilament triplet H protein (200 kD...    35   0.33 
sp|P15989|CO6A3_CHICK  Collagen alpha 3(VI) chain precursor        33   1.3  
sp|Q9QZM6|NCKX1_RAT  Sodium/potassium/calcium exchanger 1 (N...    32   2.8  
sp|P40277|H1C_CHITE  Histone H1C                                   32   2.8  
sp|Q8TLB8|YV19_METAC  Hypothetical UPF0228 protein MA3119          31   3.6  
sp|P0A9P6|DEAD_ECOLI  Cold-shock DEAD-box protein A (ATP-dep...    31   4.8  
>sp|Q14119|ZN161_HUMAN Zinc finger protein 161 (Putative transcription factor DB1)
          Length = 516

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 36/51 (70%)
 Frame = +3

Query: 567 IVSSLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
           I SS+S+   ++P  + +A ++RSP+N+ S +N+ SP+N+  P+ + SPL+
Sbjct: 398 ITSSVSSETMSNPVTVAAAMSMRSPVNVSSAVNITSPMNIGHPVTITSPLS 448

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
           SP  + SA N+ SP+N+  P+ + SPL++ SPL L +P+N
Sbjct: 421 SPVNVSSAVNITSPMNIGHPVTITSPLSMTSPLTLTTPVN 460

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 16/50 (32%), Positives = 33/50 (66%)
 Frame = +3

Query: 576 SLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLNFG 725
           +L+T F  + S   S+  + +P+ + + +++RSP+N+ S +N+ SP+N G
Sbjct: 391 TLTTPFSITSSV--SSETMSNPVTVAAAMSMRSPVNVSSAVNITSPMNIG 438

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +3

Query: 597 TSPSALCSASNL----RSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
           TSP  L +  NL     +P+N+  P+ + SP+NL +P+ L +PLN
Sbjct: 450 TSPLTLTTPVNLPTPVTAPVNIAHPVTITSPMNLPTPMTLAAPLN 494

 Score = 33.9 bits (76), Expect = 0.56
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +3

Query: 597 TSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
           TSP ++ S   L +P+NL +P+   +P+N+  P+ + SP+N
Sbjct: 444 TSPLSMTSPLTLTTPVNLPTPVT--APVNIAHPVTITSPMN 482

 Score = 33.1 bits (74), Expect = 0.96
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 603 PSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNL 704
           P+ + +  N+  P+ + SP+NL +P+ L +PLN+
Sbjct: 462 PTPVTAPVNIAHPVTITSPMNLPTPMTLAAPLNI 495

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 597 TSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
           TSP  +     + SPL++ SPL L +P+NL +P+   +P+N
Sbjct: 432 TSPMNIGHPVTITSPLSMTSPLTLTTPVNLPTPVT--APVN 470
>sp|P16884|NFH_RAT Neurofilament triplet H protein (200 kDa neurofilament protein)
           (Neurofilament heavy polypeptide) (NF-H)
          Length = 831

 Score = 36.6 bits (83), Expect = 0.087
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
           S A   SP+ + S + ++SP+  +SP  ++SP+ ++SP   +SP+
Sbjct: 395 SPAEAKSPAEVKSPATVKSPVEAKSPAEVKSPVTVKSPAEAKSPV 439

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S + ++SP   +SP   +SP  ++SP  ++SP
Sbjct: 311 SPAVAKSPAEVKSPAEVKSPAEAKSPAEAKSPAEVKSPATVKSP 354

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+++ S    +SP   +SP  ++SP  ++SP+  +SP
Sbjct: 377 SPAEAKSPASVKSPGEAKSPAEAKSPAEVKSPATVKSPVEAKSP 420

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP    S + ++SP+ ++SP   +SP+ ++SP +++SP
Sbjct: 407 SPATVKSPVEAKSPAEVKSPVTVKSPAEAKSPVEVKSPASVKSP 450

 Score = 33.9 bits (76), Expect = 0.56
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
           S A   SP    S +  +SP  ++SP  ++SP+  +SP  ++SP+
Sbjct: 383 SPASVKSPGEAKSPAEAKSPAEVKSPATVKSPVEAKSPAEVKSPV 427

 Score = 33.9 bits (76), Expect = 0.56
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 570 VSSLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           V + S A   SP  + S +  +SP+ ++SP +++SP   +SP   +SP
Sbjct: 415 VEAKSPAEVKSPVTVKSPAEAKSPVEVKSPASVKSPSEAKSPAGAKSP 462

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
           S A   SP+   S ++++SP   +SP   +SP  ++SP  ++SP+
Sbjct: 371 SPAEAKSPAEAKSPASVKSPGEAKSPAEAKSPAEVKSPATVKSPV 415

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S +  +SP  ++SP   +SP  ++SP  ++SP
Sbjct: 287 SPAEAKSPAEAKSPAEAKSPAEVKSPAVAKSPAEVKSPAEVKSP 330

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S + ++SP   +SP  ++SP  ++SP   +SP
Sbjct: 293 SPAEAKSPAEAKSPAEVKSPAVAKSPAEVKSPAEVKSPAEAKSP 336

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S +  +SP  ++SP  ++SP   +SP   +SP
Sbjct: 299 SPAEAKSPAEVKSPAVAKSPAEVKSPAEVKSPAEAKSPAEAKSP 342

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S + ++SP  ++SP   +SP   +SP  ++SP
Sbjct: 329 SPAEAKSPAEAKSPAEVKSPATVKSPGEAKSPAEAKSPAEVKSP 372

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S + ++SP   +SP   +SP  ++SP   +SP
Sbjct: 335 SPAEAKSPAEVKSPATVKSPGEAKSPAEAKSPAEVKSPAEAKSP 378

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           SP+++ S S  +SP   +SP   +SP+  +SP   +SP
Sbjct: 443 SPASVKSPSEAKSPAGAKSPAEAKSPVVAKSPAEAKSP 480

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLNFG 725
           SP+   S +  +SP   +SP   +SP+ ++SP   +SP+  G
Sbjct: 491 SPAEAKSPAEAKSPAEAKSPAEAKSPVEVKSPEKAKSPVKEG 532

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP    S +  +SP  ++SP   +SP   +SP +++SP
Sbjct: 347 SPATVKSPGEAKSPAEAKSPAEVKSPAEAKSPAEAKSPASVKSP 390

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S +  +SP   +SP +++SP   +SP   +SP
Sbjct: 359 SPAEAKSPAEVKSPAEAKSPAEAKSPASVKSPGEAKSPAEAKSP 402

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 570 VSSLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           V+  S A   SP  + S ++++SP   +SP   +SP   +SP+  +SP
Sbjct: 427 VTVKSPAEAKSPVEVKSPASVKSPSEAKSPAGAKSPAEAKSPVVAKSP 474

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           SP+ + S +  +SP   +SP  ++SP  ++SP   +SP
Sbjct: 323 SPAEVKSPAEAKSPAEAKSPAEVKSPATVKSPGEAKSP 360

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
           SP+   S   ++SP +++SP   +SP   +SP   +SP+
Sbjct: 431 SPAEAKSPVEVKSPASVKSPSEAKSPAGAKSPAEAKSPV 469

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A    P+   S +  +SP   +SP   +SP   +SP+ ++SP
Sbjct: 479 SPAGAKPPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPVEVKSP 522

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 570 VSSLSTAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPL 716
           V + S A   SP+     +  +SP   +SP   +SP   +SP   +SP+
Sbjct: 469 VVAKSPAEAKSPAGAKPPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPV 517
>sp|P19246|NFH_MOUSE Neurofilament triplet H protein (200 kDa neurofilament protein)
           (Neurofilament heavy polypeptide) (NF-H)
          Length = 1087

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+A+ S    +SP   +SP   +SP   +SP+ ++SP
Sbjct: 724 SPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP 767

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S +  +SP   +SP   +SP   +SP  ++SP
Sbjct: 598 SPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSP 641

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP    S S  +SP   +SP   +SP   +SP  ++SP
Sbjct: 634 SPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSP 677

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S    +SP   +SP   +SP   +SP   +SP
Sbjct: 628 SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP 671

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S    +SP   +SP   +SP  ++SP   +SP
Sbjct: 664 SPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSP 707

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S +  +SP  ++SP   +SP  ++SP   +SP
Sbjct: 688 SPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 731

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP    S S  +SP   +SP   +SP   +SP   +SP
Sbjct: 580 SPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSP 623

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           SPS   S +  +SP   +SP   +SP   +SP   +SP
Sbjct: 592 SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSP 629

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSPLNFG 725
           S A   SP    S    +SP   +SP   +SP+ ++SP   ++P+  G
Sbjct: 730 SPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEG 777

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S    +SP   +SP   +SP   +SP   +SP
Sbjct: 574 SPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP 617

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S +  +SP   +SP   +SP  ++SP   +SP
Sbjct: 604 SPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSP 647

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           SPS   S +  +SP   +SP   +SP  ++SP   +SP
Sbjct: 646 SPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSP 683

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S + ++SP   +SP   +SP   +SP  ++SP
Sbjct: 658 SPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSP 701

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S + ++SP   +SP  ++SP   +SP  ++SP
Sbjct: 682 SPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSP 725

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S +  +SP   +SP  ++SP   +SP   +SP
Sbjct: 610 SPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSP 653

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S +  +SP  ++SP   +SP   +SP   +SP
Sbjct: 616 SPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSP 659

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S + ++SP   +SP   +SP   +SP   +SP
Sbjct: 622 SPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSP 665

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           SP    S +  +SP   +SP  ++SP   +SP  ++SP
Sbjct: 676 SPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSP 713

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+ + S    +SP  ++SP   +SP  ++SP   +SP
Sbjct: 700 SPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSP 743

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 600 SPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           SP+A+ S +  +SP  ++SP   +SP   +SP   +SP
Sbjct: 718 SPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSP 755

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S +  +SP  ++SP   +SP   +SP   +SP
Sbjct: 652 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSP 695

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 582 STAFGTSPSALCSASNLRSPLNLRSPLNLRSPLNLRSPLNLRSP 713
           S A   SP+   S + ++SP   +SP   +SP   +SP   +SP
Sbjct: 568 SPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSP 611
>sp|P15989|CO6A3_CHICK Collagen alpha 3(VI) chain precursor
          Length = 3137

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 28/87 (32%), Positives = 35/87 (40%)
 Frame = -3

Query: 724  PKFNGDRKFNGERKFNGERKFNGERKFNGERKFDAEHKADGEVPNAVESEETINVPKKIY 545
            P  NG + F G     G R   G R F GE+    E   DG     ++ EE         
Sbjct: 2081 PGVNGTQGFQG---CPGHRGTKGSRGFPGEKGELGEMGLDG-----IDGEEGDKGLPGFS 2132

Query: 544  GERKFNGERKFNGERRFNGERKFNGER 464
            GE+ F+G R   G +   GER   G R
Sbjct: 2133 GEKGFSGRRGSKGAKGERGERGDRGLR 2159
>sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 (Na(+)/K(+)/Ca(2+)-exchange
           protein 1) (Retinal rod Na-Ca+K exchanger)
          Length = 1181

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 676 GERKFNGERKFNGERKFDAEHKADGEVPNAVESEETINVPKKIYGERKFNGERKFNGERR 497
           GER+   E K + E + +AE K DG+     E E      +K  GE +  G+ +  GE  
Sbjct: 727 GERETEAEGKKDEEGETEAERKEDGQ-----EEETETKGKEKQEGETESEGKDEQEGETE 781

Query: 496 FNG-ERKFNGERKAK 455
             G E    GE +A+
Sbjct: 782 AEGKEADHEGETEAE 796
>sp|P40277|H1C_CHITE Histone H1C
          Length = 221

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -3

Query: 220 GTERRPFNGTERKPFNGTERQPFNASVKKPFNGEKKFNKTIEKVATTAT 74
           G+ + P    + K    TE++P  A+ K    GEKK  KTI K    AT
Sbjct: 106 GSFKLPAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVKKTIAKKPKAAT 154
>sp|Q8TLB8|YV19_METAC Hypothetical UPF0228 protein MA3119
          Length = 229

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 633 RSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
           ++P+N  +P+N  +P+N  +P+N  +P+N
Sbjct: 29  QAPINTSTPVNTSTPVNTSTPVNTSTPVN 57

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 627 NLRSPLNLRSPLNLRSPLNLRSPLNLRSPLN 719
           N  +P+N  +P+N  +P+N  +P+N  +P++
Sbjct: 33  NTSTPVNTSTPVNTSTPVNTSTPVNTSTPVS 63
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
 sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
 sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
          Length = 629

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -3

Query: 718 FNGDRKFNGERKFNGERKFNGE---RKFNGERKFDAEHKADGEVPNAVESEETINVPKKI 548
           F G+R+  G R F+GER+  G    R+F+GER+       +G  P   +S          
Sbjct: 578 FGGERR-EGGRNFSGERREGGRGDGRRFSGERR-------EGRAPRRDDST--------- 620

Query: 547 YGERKFNGE 521
            G R+F G+
Sbjct: 621 -GRRRFGGD 628
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,012,297
Number of Sequences: 369166
Number of extensions: 957759
Number of successful extensions: 3662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)