Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01579
(244 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6EW00|NU4C_NYMAL NAD(P)H-quinone oxidoreductase chain 4... 28 5.0
sp|O28379|KCY_ARCFU Cytidylate kinase (CK) (Cytidine monoph... 28 5.0
sp|Q7YJT3|NU4C_CALFE NAD(P)H-quinone oxidoreductase chain 4... 28 6.6
sp|Q6F1W2|TRUA_MESFL tRNA pseudouridine synthase A (tRNA-ur... 28 8.6
>sp|Q6EW00|NU4C_NYMAL NAD(P)H-quinone oxidoreductase chain 4, chloroplast (NAD(P)H
dehydrogenase, chain 4) (NADH-plastoquinone
oxidoreductase chain 4)
Length = 500
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 158 ILYDNFGYTIHKYEYNRLYPLNIEFDIVKLLEFHWQKDFQG*NTTPLLIT 9
+L + + H + L L +F+ + L +FHW+ G + P+L+T
Sbjct: 44 LLLTTYVFCYHFKLDDPLIQLEEDFNWINLFDFHWRLGIDGLSIGPILLT 93
>sp|O28379|KCY_ARCFU Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase)
Length = 180
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Frame = +2
Query: 14 LAAVLCFTLENLS--ANETPEVLRC--QTQCLM-DKDDCI----RICGWYIQNCHTKCW 163
LAA T+E S A E PE+ R QTQ M +K+ + R+ GW+++N K W
Sbjct: 38 LAAKKGMTVEEFSQYAEENPEIDRLIDQTQKEMAEKEKNVVVEGRLSGWFVKNADLKVW 96
>sp|Q7YJT3|NU4C_CALFE NAD(P)H-quinone oxidoreductase chain 4, chloroplast (NAD(P)H
dehydrogenase, chain 4) (NADH-plastoquinone
oxidoreductase chain 4)
Length = 502
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = -3
Query: 158 ILYDNFGYTIHKYEYNRLYPLNIEFDIVKLLEFHWQKDFQG*NTTPLLIT 9
IL + + H + L L + + + +FHW+ G + P+L+T
Sbjct: 46 ILLTTYAFCYHFQSDDPLIQLEEAYKWIHIFDFHWRPGIDGLSIGPILLT 95
>sp|Q6F1W2|TRUA_MESFL tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I)
Length = 251
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 176 DYKHPNILYDNFGYTIHKYEYNRL---YPLNIEFDIVKL 69
D+ ++LY + YTI+ EYN L + LN +F+ + +
Sbjct: 99 DFNIRDVLYKEYSYTINDKEYNILSNRFELNWDFEEIDI 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,836,086
Number of Sequences: 369166
Number of extensions: 415811
Number of successful extensions: 1064
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)