Planaria EST Database


DrC_01579

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01579
         (244 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6EW00|NU4C_NYMAL  NAD(P)H-quinone oxidoreductase chain 4...    28   5.0  
sp|O28379|KCY_ARCFU  Cytidylate kinase (CK) (Cytidine monoph...    28   5.0  
sp|Q7YJT3|NU4C_CALFE  NAD(P)H-quinone oxidoreductase chain 4...    28   6.6  
sp|Q6F1W2|TRUA_MESFL  tRNA pseudouridine synthase A (tRNA-ur...    28   8.6  
>sp|Q6EW00|NU4C_NYMAL NAD(P)H-quinone oxidoreductase chain 4, chloroplast (NAD(P)H
           dehydrogenase, chain 4) (NADH-plastoquinone
           oxidoreductase chain 4)
          Length = 500

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 158 ILYDNFGYTIHKYEYNRLYPLNIEFDIVKLLEFHWQKDFQG*NTTPLLIT 9
           +L   + +  H    + L  L  +F+ + L +FHW+    G +  P+L+T
Sbjct: 44  LLLTTYVFCYHFKLDDPLIQLEEDFNWINLFDFHWRLGIDGLSIGPILLT 93
>sp|O28379|KCY_ARCFU Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase)
          Length = 180

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
 Frame = +2

Query: 14  LAAVLCFTLENLS--ANETPEVLRC--QTQCLM-DKDDCI----RICGWYIQNCHTKCW 163
           LAA    T+E  S  A E PE+ R   QTQ  M +K+  +    R+ GW+++N   K W
Sbjct: 38  LAAKKGMTVEEFSQYAEENPEIDRLIDQTQKEMAEKEKNVVVEGRLSGWFVKNADLKVW 96
>sp|Q7YJT3|NU4C_CALFE NAD(P)H-quinone oxidoreductase chain 4, chloroplast (NAD(P)H
           dehydrogenase, chain 4) (NADH-plastoquinone
           oxidoreductase chain 4)
          Length = 502

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -3

Query: 158 ILYDNFGYTIHKYEYNRLYPLNIEFDIVKLLEFHWQKDFQG*NTTPLLIT 9
           IL   + +  H    + L  L   +  + + +FHW+    G +  P+L+T
Sbjct: 46  ILLTTYAFCYHFQSDDPLIQLEEAYKWIHIFDFHWRPGIDGLSIGPILLT 95
>sp|Q6F1W2|TRUA_MESFL tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
           pseudouridylate synthase I)
          Length = 251

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 176 DYKHPNILYDNFGYTIHKYEYNRL---YPLNIEFDIVKL 69
           D+   ++LY  + YTI+  EYN L   + LN +F+ + +
Sbjct: 99  DFNIRDVLYKEYSYTINDKEYNILSNRFELNWDFEEIDI 137
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,836,086
Number of Sequences: 369166
Number of extensions: 415811
Number of successful extensions: 1064
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)