Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01578
(425 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14462|SEC4_CANAL Ras-related protein SEC4 32 0.43
sp|Q8DY60|CBIO3_STRA5 Putative cobalt import ATP-binding pr... 32 0.73
sp|Q8E3S6|CBIO3_STRA3 Putative cobalt import ATP-binding pr... 32 0.73
sp|P36124|SET3_YEAST SET domain protein 3 32 0.73
sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chlorop... 31 0.96
sp|Q8RHN5|TILS_FUSNN tRNA(Ile)-lysidine synthase (tRNA(Ile)... 30 2.1
sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 (... 29 3.6
sp|Q6W8W4|POL1_RRVC RNA1 polyprotein (P1) [Contains: P1A pr... 29 3.6
sp|Q97AJ6|TRF3_THEVO Tricorn protease interacting factor F3 29 3.6
sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1... 29 3.6
>sp|O14462|SEC4_CANAL Ras-related protein SEC4
Length = 210
Score = 32.3 bits (72), Expect = 0.43
Identities = 18/87 (20%), Positives = 43/87 (49%)
Frame = +3
Query: 3 TKQLKNMPNYRLIIDTKLDNRPKTVYVTGISSTQTVDDIRNMFKNFQIEKIESSDNDVPF 182
++ +N+ N+ + T+ N +++ G + D++ Q +++ + N VPF
Sbjct: 99 SRSFENVENWFQTV-TQHANEDAQIFLVG---NKCDDEVNRQVSKEQGQELAAKLN-VPF 153
Query: 183 FSIKLKTRKEADRVFKEMTKMLKEKHI 263
K+ + D +F E+ +++EKH+
Sbjct: 154 LEASAKSNENVDSIFYELASIIQEKHV 180
>sp|Q8DY60|CBIO3_STRA5 Putative cobalt import ATP-binding protein cbiO 3
Length = 558
Score = 31.6 bits (70), Expect = 0.73
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +3
Query: 33 RLIIDTKLDNRPKTVYVT--GISSTQTVDDIRNMFKNFQIEKIESSDNDVPFFSIKLKTR 206
++I + + D KT +++ GI + ++N+ +F+ + +S +D F + +
Sbjct: 223 QIIYNGEPDQLLKTNFLSEYGIREPLYISALKNLGYDFEKQNTMTSIDDFDFSELLIPKM 282
Query: 207 KEADRVFKEMTKMLKEKHISLSYDKPIPVCDPLDF 311
+ D + K K+L +H+S+SYD D + F
Sbjct: 283 RALD-LDKHTDKLLSVQHLSVSYDLENNTLDDVSF 316
>sp|Q8E3S6|CBIO3_STRA3 Putative cobalt import ATP-binding protein cbiO 3
Length = 558
Score = 31.6 bits (70), Expect = 0.73
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +3
Query: 33 RLIIDTKLDNRPKTVYVT--GISSTQTVDDIRNMFKNFQIEKIESSDNDVPFFSIKLKTR 206
++I + + D KT +++ GI + ++N+ +F+ + +S +D F + +
Sbjct: 223 QIIYNGEPDQLLKTNFLSEYGIREPLYISALKNLGYDFEKQNTMTSIDDFDFSELLIPKM 282
Query: 207 KEADRVFKEMTKMLKEKHISLSYDKPIPVCDPLDF 311
+ D + K K+L +H+S+SYD D + F
Sbjct: 283 RALD-LDKHTDKLLSVQHLSVSYDLENNTLDDVSF 316
>sp|P36124|SET3_YEAST SET domain protein 3
Length = 751
Score = 31.6 bits (70), Expect = 0.73
Identities = 28/93 (30%), Positives = 40/93 (43%)
Frame = +3
Query: 57 DNRPKTVYVTGISSTQTVDDIRNMFKNFQIEKIESSDNDVPFFSIKLKTRKEADRVFKEM 236
+N PK I ST DDI FK F + SS+ VP K E + +
Sbjct: 581 NNGPKIPQKNTIDSTNNPDDIAKPFK-FALFAQHSSNISVP----KKNETSEKPLIITKS 635
Query: 237 TKMLKEKHISLSYDKPIPVCDPLDFQTRSVISE 335
T E HI+ + PIPV P++ +R ++
Sbjct: 636 TDY-DESHITNIEELPIPVLLPINKTSRQTAND 667
>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplast precursor (CP22)
Length = 274
Score = 31.2 bits (69), Expect = 0.96
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 87 GISSTQTVDDIRNMFKNFQIEKIE-SSDNDVPFFSIKLKTRKEADRVFKEMTKMLKEKHI 263
G+S+T T+D RN QI+KI+ S FFS + + VFK + +
Sbjct: 11 GVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKA 70
Query: 264 SLSYDKP 284
+KP
Sbjct: 71 PKKVEKP 77
>sp|Q8RHN5|TILS_FUSNN tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 448
Score = 30.0 bits (66), Expect = 2.1
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 20/116 (17%)
Frame = +3
Query: 3 TKQLKNMPNYRLI-------IDTKLDNRP--KTVYVTGISSTQTVDDIR---NMFKNFQI 146
TK++ +YR++ I+ K +N V I S Q DD + N+ KN I
Sbjct: 293 TKKIDLDKSYRIVKDYTHLYIEEKKENFTIVNRVVKLKIPSEQIFDDFKISVNIVKNLDI 352
Query: 147 EK------IESSDNDVPFFSIKLKTRKEADRVF--KEMTKMLKEKHISLSYDKPIP 290
K +++ ND+ I+++ RKE DR+F ++ +K +KE I D+ IP
Sbjct: 353 PKKKNQYLLDALYNDI----IEVRYRKEGDRIFLDEKHSKKIKEVFI----DQKIP 400
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 (Musashi-1)
Length = 362
Score = 29.3 bits (64), Expect = 3.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 51 KLDNRPKTVYVTGISSTQTVDDIRNMFKNF 140
K+ R K ++V G+S TV+D+++ F+ F
Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKHYFEQF 132
>sp|Q6W8W4|POL1_RRVC RNA1 polyprotein (P1) [Contains: P1A protein (1A) (Protease
cofactor); Putative helicase (NTP-binding protein) (NTB)
(1B) (Membrane-binding protein); Viral genome-linked
protein (1C-VPg); Picornain 3C-like protease (3C-like
protease) (1D-PRO); RNA-directed RNA polymerase (1E-POL)]
Length = 2367
Score = 29.3 bits (64), Expect = 3.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 285 IPVCDPLDFQTRSVISETHRGTPSM 359
IP C PLD Q + I ETH GTP +
Sbjct: 1726 IPDC-PLDVQLKKGIEETHLGTPQL 1749
>sp|Q97AJ6|TRF3_THEVO Tricorn protease interacting factor F3
Length = 779
Score = 29.3 bits (64), Expect = 3.6
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +3
Query: 78 YVTGISSTQTVDDIRNMFKNFQIEKIESSDNDVPFFSIKLKTRKEADRV-------FKEM 236
Y S T +D + N I+K+E+SD + F KT + + + FK
Sbjct: 118 YKAVFSITLVIDKDYDAISNMPIKKVETSDRKIVEFE---KTPRMSTYLLYIGVGKFKYA 174
Query: 237 TKMLKEKHISLSYDKPIPVCDPLDFQTRSV 326
++ K++ I L+ K I P+D RS+
Sbjct: 175 SERYKDREIILASLKDIKSKYPIDIAKRSI 204
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 (Musashi-1)
Length = 362
Score = 29.3 bits (64), Expect = 3.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 51 KLDNRPKTVYVTGISSTQTVDDIRNMFKNF 140
K+ R K ++V G+S TV+D+++ F+ F
Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKHYFEQF 132
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,426,444
Number of Sequences: 369166
Number of extensions: 928738
Number of successful extensions: 2380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2380
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)