Planaria EST Database


DrC_01578

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01578
         (425 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14462|SEC4_CANAL  Ras-related protein SEC4                     32   0.43 
sp|Q8DY60|CBIO3_STRA5  Putative cobalt import ATP-binding pr...    32   0.73 
sp|Q8E3S6|CBIO3_STRA3  Putative cobalt import ATP-binding pr...    32   0.73 
sp|P36124|SET3_YEAST  SET domain protein 3                         32   0.73 
sp|Q02060|PSBS_SPIOL  Photosystem II 22 kDa protein, chlorop...    31   0.96 
sp|Q8RHN5|TILS_FUSNN  tRNA(Ile)-lysidine synthase (tRNA(Ile)...    30   2.1  
sp|Q8K3P4|MSI1H_RAT  RNA-binding protein Musashi homolog 1 (...    29   3.6  
sp|Q6W8W4|POL1_RRVC  RNA1 polyprotein (P1) [Contains: P1A pr...    29   3.6  
sp|Q97AJ6|TRF3_THEVO  Tricorn protease interacting factor F3       29   3.6  
sp|Q61474|MSI1H_MOUSE  RNA-binding protein Musashi homolog 1...    29   3.6  
>sp|O14462|SEC4_CANAL Ras-related protein SEC4
          Length = 210

 Score = 32.3 bits (72), Expect = 0.43
 Identities = 18/87 (20%), Positives = 43/87 (49%)
 Frame = +3

Query: 3   TKQLKNMPNYRLIIDTKLDNRPKTVYVTGISSTQTVDDIRNMFKNFQIEKIESSDNDVPF 182
           ++  +N+ N+   + T+  N    +++ G    +  D++       Q +++ +  N VPF
Sbjct: 99  SRSFENVENWFQTV-TQHANEDAQIFLVG---NKCDDEVNRQVSKEQGQELAAKLN-VPF 153

Query: 183 FSIKLKTRKEADRVFKEMTKMLKEKHI 263
                K+ +  D +F E+  +++EKH+
Sbjct: 154 LEASAKSNENVDSIFYELASIIQEKHV 180
>sp|Q8DY60|CBIO3_STRA5 Putative cobalt import ATP-binding protein cbiO 3
          Length = 558

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +3

Query: 33  RLIIDTKLDNRPKTVYVT--GISSTQTVDDIRNMFKNFQIEKIESSDNDVPFFSIKLKTR 206
           ++I + + D   KT +++  GI     +  ++N+  +F+ +   +S +D  F  + +   
Sbjct: 223 QIIYNGEPDQLLKTNFLSEYGIREPLYISALKNLGYDFEKQNTMTSIDDFDFSELLIPKM 282

Query: 207 KEADRVFKEMTKMLKEKHISLSYDKPIPVCDPLDF 311
           +  D + K   K+L  +H+S+SYD      D + F
Sbjct: 283 RALD-LDKHTDKLLSVQHLSVSYDLENNTLDDVSF 316
>sp|Q8E3S6|CBIO3_STRA3 Putative cobalt import ATP-binding protein cbiO 3
          Length = 558

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +3

Query: 33  RLIIDTKLDNRPKTVYVT--GISSTQTVDDIRNMFKNFQIEKIESSDNDVPFFSIKLKTR 206
           ++I + + D   KT +++  GI     +  ++N+  +F+ +   +S +D  F  + +   
Sbjct: 223 QIIYNGEPDQLLKTNFLSEYGIREPLYISALKNLGYDFEKQNTMTSIDDFDFSELLIPKM 282

Query: 207 KEADRVFKEMTKMLKEKHISLSYDKPIPVCDPLDF 311
           +  D + K   K+L  +H+S+SYD      D + F
Sbjct: 283 RALD-LDKHTDKLLSVQHLSVSYDLENNTLDDVSF 316
>sp|P36124|SET3_YEAST SET domain protein 3
          Length = 751

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 28/93 (30%), Positives = 40/93 (43%)
 Frame = +3

Query: 57  DNRPKTVYVTGISSTQTVDDIRNMFKNFQIEKIESSDNDVPFFSIKLKTRKEADRVFKEM 236
           +N PK      I ST   DDI   FK F +    SS+  VP    K     E   +  + 
Sbjct: 581 NNGPKIPQKNTIDSTNNPDDIAKPFK-FALFAQHSSNISVP----KKNETSEKPLIITKS 635

Query: 237 TKMLKEKHISLSYDKPIPVCDPLDFQTRSVISE 335
           T    E HI+   + PIPV  P++  +R   ++
Sbjct: 636 TDY-DESHITNIEELPIPVLLPINKTSRQTAND 667
>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplast precursor (CP22)
          Length = 274

 Score = 31.2 bits (69), Expect = 0.96
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 87  GISSTQTVDDIRNMFKNFQIEKIE-SSDNDVPFFSIKLKTRKEADRVFKEMTKMLKEKHI 263
           G+S+T T+D  RN     QI+KI+  S     FFS    +   +  VFK +     +   
Sbjct: 11  GVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKA 70

Query: 264 SLSYDKP 284
               +KP
Sbjct: 71  PKKVEKP 77
>sp|Q8RHN5|TILS_FUSNN tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 448

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 20/116 (17%)
 Frame = +3

Query: 3   TKQLKNMPNYRLI-------IDTKLDNRP--KTVYVTGISSTQTVDDIR---NMFKNFQI 146
           TK++    +YR++       I+ K +N      V    I S Q  DD +   N+ KN  I
Sbjct: 293 TKKIDLDKSYRIVKDYTHLYIEEKKENFTIVNRVVKLKIPSEQIFDDFKISVNIVKNLDI 352

Query: 147 EK------IESSDNDVPFFSIKLKTRKEADRVF--KEMTKMLKEKHISLSYDKPIP 290
            K      +++  ND+    I+++ RKE DR+F  ++ +K +KE  I    D+ IP
Sbjct: 353 PKKKNQYLLDALYNDI----IEVRYRKEGDRIFLDEKHSKKIKEVFI----DQKIP 400
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 (Musashi-1)
          Length = 362

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 51  KLDNRPKTVYVTGISSTQTVDDIRNMFKNF 140
           K+  R K ++V G+S   TV+D+++ F+ F
Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKHYFEQF 132
>sp|Q6W8W4|POL1_RRVC RNA1 polyprotein (P1) [Contains: P1A protein (1A) (Protease
            cofactor); Putative helicase (NTP-binding protein) (NTB)
            (1B) (Membrane-binding protein); Viral genome-linked
            protein (1C-VPg); Picornain 3C-like protease (3C-like
            protease) (1D-PRO); RNA-directed RNA polymerase (1E-POL)]
          Length = 2367

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 285  IPVCDPLDFQTRSVISETHRGTPSM 359
            IP C PLD Q +  I ETH GTP +
Sbjct: 1726 IPDC-PLDVQLKKGIEETHLGTPQL 1749
>sp|Q97AJ6|TRF3_THEVO Tricorn protease interacting factor F3
          Length = 779

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +3

Query: 78  YVTGISSTQTVDDIRNMFKNFQIEKIESSDNDVPFFSIKLKTRKEADRV-------FKEM 236
           Y    S T  +D   +   N  I+K+E+SD  +  F    KT + +  +       FK  
Sbjct: 118 YKAVFSITLVIDKDYDAISNMPIKKVETSDRKIVEFE---KTPRMSTYLLYIGVGKFKYA 174

Query: 237 TKMLKEKHISLSYDKPIPVCDPLDFQTRSV 326
           ++  K++ I L+  K I    P+D   RS+
Sbjct: 175 SERYKDREIILASLKDIKSKYPIDIAKRSI 204
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 (Musashi-1)
          Length = 362

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 51  KLDNRPKTVYVTGISSTQTVDDIRNMFKNF 140
           K+  R K ++V G+S   TV+D+++ F+ F
Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKHYFEQF 132
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,426,444
Number of Sequences: 369166
Number of extensions: 928738
Number of successful extensions: 2380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2380
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)