Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01571
(463 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62846|RS15_CHICK 40S ribosomal protein S15 (RIG protein... 179 3e-45
sp|Q56K10|RS15_BOVIN 40S ribosomal protein S15 179 3e-45
sp|P20342|RS15_XENLA 40S ribosomal protein S15 (RIG protein) 177 1e-44
sp|P70066|RS15_XIPMA 40S ribosomal protein S15 (RIG protein) 175 5e-44
sp|O65059|RS15_PICMA 40S ribosomal protein S15 169 4e-42
sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15 167 1e-41
sp|Q9XVP0|RS15_CAEEL 40S ribosomal protein S15 166 3e-41
sp|Q9UTQ6|RS15B_SCHPO 40S ribosomal protein S15-B 162 3e-40
sp|P34737|RS15_PODAN 40S ribosomal protein S15 (S12) 162 4e-40
sp|Q08112|RS151_ARATH 40S ribosomal protein S15-1 161 6e-40
>sp|P62846|RS15_CHICK 40S ribosomal protein S15 (RIG protein)
sp|Q5RDI7|RS15_PONPY 40S ribosomal protein S15
sp|P62844|RS15_PIG 40S ribosomal protein S15 (RIG protein)
sp|P62843|RS15_MOUSE 40S ribosomal protein S15 (RIG protein)
sp|P62842|RS15_MESAU 40S ribosomal protein S15 (RIG protein)
sp|P62841|RS15_HUMAN 40S ribosomal protein S15 (RIG protein)
sp|P62845|RS15_RAT 40S ribosomal protein S15 (RIG protein)
Length = 145
Score = 179 bits (453), Expect = 3e-45
Identities = 90/143 (62%), Positives = 104/143 (72%)
Frame = +1
Query: 4 MDASKKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXX 183
++ KKR F+KF YRG+DLDQLL+M+ +Q +L GL+R Q +
Sbjct: 4 VEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKA 63
Query: 184 XXXVTEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLT 363
+ EKP VVKTH R+MII PEMVGSMVGVYNGKT+ QVEIKPEMIGHYLGEFS+T
Sbjct: 64 KKEAPPM-EKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSIT 122
Query: 364 YKPVKHGRPGIGATHSSRFIPLK 432
YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 YKPVKHGRPGIGATHSSRFIPLK 145
>sp|Q56K10|RS15_BOVIN 40S ribosomal protein S15
Length = 145
Score = 179 bits (453), Expect = 3e-45
Identities = 90/143 (62%), Positives = 104/143 (72%)
Frame = +1
Query: 4 MDASKKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXX 183
++ KKR F+KF YRG+DLDQLL+M+ +Q +L GL+R Q +
Sbjct: 4 VEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKA 63
Query: 184 XXXVTEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLT 363
+ EKP VVKTH R+MII PEMVGSMVGVYNGKT+ QVEIKPEMIGHYLGEFS+T
Sbjct: 64 KKDAPPM-EKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSIT 122
Query: 364 YKPVKHGRPGIGATHSSRFIPLK 432
YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 YKPVKHGRPGIGATHSSRFIPLK 145
>sp|P20342|RS15_XENLA 40S ribosomal protein S15 (RIG protein)
Length = 145
Score = 177 bits (449), Expect = 1e-44
Identities = 89/143 (62%), Positives = 103/143 (72%)
Frame = +1
Query: 4 MDASKKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXX 183
++ KKR FKKF YRG+DLDQLL+M+ +Q +L GL+R Q +
Sbjct: 4 VEQKKKRTFKKFTYRGVDLDQLLDMSYEQVMQLYCARQRRRLNRGLRRKQNSLLKRLRKA 63
Query: 184 XXXVTEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLT 363
+ EKP V+KTH R+MII PEMVGSMVGVYNGK + QVEIKPEMIGHYLGEFS+T
Sbjct: 64 KKEAPPM-EKPEVIKTHLRDMIILPEMVGSMVGVYNGKAFNQVEIKPEMIGHYLGEFSIT 122
Query: 364 YKPVKHGRPGIGATHSSRFIPLK 432
YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 YKPVKHGRPGIGATHSSRFIPLK 145
>sp|P70066|RS15_XIPMA 40S ribosomal protein S15 (RIG protein)
Length = 145
Score = 175 bits (443), Expect = 5e-44
Identities = 87/142 (61%), Positives = 102/142 (71%)
Frame = +1
Query: 7 DASKKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXXX 186
+ KKR F+KF YRG+DLDQLL+M+ +Q +L GL+R ++
Sbjct: 5 EIKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYCARQRRRLNRGLRRKHQSLLKRLPKAK 64
Query: 187 XXVTEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLTY 366
+ EKP VVKTH R+M+I PEMVGSMVGVYNGKT+ QVEIKPEM GHYLGEFS+TY
Sbjct: 65 KEAPPM-EKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITY 123
Query: 367 KPVKHGRPGIGATHSSRFIPLK 432
KPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 KPVKHGRPGIGATHSSRFIPLK 145
>sp|O65059|RS15_PICMA 40S ribosomal protein S15
Length = 151
Score = 169 bits (427), Expect = 4e-42
Identities = 85/139 (61%), Positives = 98/139 (70%)
Frame = +1
Query: 16 KKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXXXXXV 195
KKR FKKF YRG+DLD LL+M +++ +L GLKR Q
Sbjct: 14 KKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKR-QPMALIKKLRKAKRE 72
Query: 196 TEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLTYKPV 375
GEKP V+TH RNMII PEM+GS++GVYNGKT+ QVEIKPEMIGHYL EFS++YKPV
Sbjct: 73 APSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 132
Query: 376 KHGRPGIGATHSSRFIPLK 432
KHGRPGIGATHSSRFIPLK
Sbjct: 133 KHGRPGIGATHSSRFIPLK 151
>sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15
Length = 153
Score = 167 bits (423), Expect = 1e-41
Identities = 84/139 (60%), Positives = 96/139 (69%)
Frame = +1
Query: 16 KKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXXXXXV 195
KKR F+KF YRG+DLDQLL+M + +L GLKR
Sbjct: 16 KKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDA 75
Query: 196 TEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLTYKPV 375
GEKP V+TH RNMII PEM+GS++GVYNGKT+ QVEIKPEMIGHYL EFS++YKPV
Sbjct: 76 PP-GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 134
Query: 376 KHGRPGIGATHSSRFIPLK 432
KHGRPGIGATHSSRFIPLK
Sbjct: 135 KHGRPGIGATHSSRFIPLK 153
>sp|Q9XVP0|RS15_CAEEL 40S ribosomal protein S15
Length = 151
Score = 166 bits (419), Expect = 3e-41
Identities = 80/142 (56%), Positives = 100/142 (70%)
Frame = +1
Query: 7 DASKKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXXX 186
+ KKR F+KF YRG+DLDQLL+M+ +QF++L+ GLKR +
Sbjct: 11 ELKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKR-KHLALIAKVQKA 69
Query: 187 XXVTEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLTY 366
+ EKP VKTH R+MII PE+VG ++G+YNGK + Q EIKPEMIG YLGEF+++Y
Sbjct: 70 KKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISY 129
Query: 367 KPVKHGRPGIGATHSSRFIPLK 432
KPVKHGRPGIGATHSSRFIPLK
Sbjct: 130 KPVKHGRPGIGATHSSRFIPLK 151
>sp|Q9UTQ6|RS15B_SCHPO 40S ribosomal protein S15-B
Length = 154
Score = 162 bits (410), Expect = 3e-40
Identities = 80/139 (57%), Positives = 96/139 (69%)
Frame = +1
Query: 16 KKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXXXXXV 195
KKR F+ F YRG++L+QLL+++ +Q +L GL P +
Sbjct: 17 KKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLG-PNASRFIRKLRKAKSE 75
Query: 196 TEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLTYKPV 375
+ EKP VKTH RNMII PEMVGS+VG+YNGK + QVEI+PEMIGHYLGEFS+TYKP
Sbjct: 76 APLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPT 135
Query: 376 KHGRPGIGATHSSRFIPLK 432
KHGRPGIGATHSSRFIPLK
Sbjct: 136 KHGRPGIGATHSSRFIPLK 154
>sp|P34737|RS15_PODAN 40S ribosomal protein S15 (S12)
Length = 152
Score = 162 bits (409), Expect = 4e-40
Identities = 78/142 (54%), Positives = 100/142 (70%)
Frame = +1
Query: 7 DASKKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXXX 186
+ KKR F+KF YRG+DLD LL++ + + ++V GLKR +
Sbjct: 12 ELKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKR-RPMGLIKKLRKA 70
Query: 187 XXVTEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLTY 366
+ EKP +VKTH R+MI+ PEM+GS+VG+Y+GK + QVEIKPEM+GHYLGEFS++Y
Sbjct: 71 KQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISY 130
Query: 367 KPVKHGRPGIGATHSSRFIPLK 432
KPVKHGRPGIGATHSSRFIPLK
Sbjct: 131 KPVKHGRPGIGATHSSRFIPLK 152
>sp|Q08112|RS151_ARATH 40S ribosomal protein S15-1
Length = 152
Score = 161 bits (408), Expect = 6e-40
Identities = 80/139 (57%), Positives = 95/139 (68%)
Frame = +1
Query: 16 KKRVFKKFYYRGIDLDQLLEMNNQQFSELVXXXXXXXXXXGLKRPQETXXXXXXXXXXXV 195
KKR FKKF ++G+DLD LL+M+ +L GL R
Sbjct: 15 KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74
Query: 196 TEIGEKPTVVKTHQRNMIIFPEMVGSMVGVYNGKTYTQVEIKPEMIGHYLGEFSLTYKPV 375
+ GEKP V+TH RNMII PEM+GS++GVYNGKT+ QVEIKPEMIGHYL EFS++YKPV
Sbjct: 75 PQ-GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 133
Query: 376 KHGRPGIGATHSSRFIPLK 432
KHGRPG+GATHSSRFIPLK
Sbjct: 134 KHGRPGVGATHSSRFIPLK 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,793,528
Number of Sequences: 369166
Number of extensions: 907586
Number of successful extensions: 2531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2493
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)