Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01570
(806 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CYH2|CJ058_MOUSE Protein C10orf58 homolog precursor 50 9e-06
sp|Q9BRX8|CJ058_HUMAN Protein C10orf58 precursor 47 8e-05
sp|Q6AXX6|CJ058_RAT Protein C10orf58 homolog precursor 47 8e-05
sp|Q9ZUU2|U308_ARATH UPF0308 protein At2g37240, chloroplast... 40 0.006
sp|Q9D1A0|CI021_MOUSE UPF0308 protein C9orf21 homolog 36 0.11
sp|Q7RTV5|CI21_HUMAN UPF0308 protein C9orf21 35 0.18
sp|P55012|S12A2_MOUSE Solute carrier family 12 member 2 (Bu... 34 0.54
sp|Q8AV19|CI021_FUGRU UPF0308 protein C9orf21 homolog (fmHP) 32 1.6
sp|P55011|S12A2_HUMAN Solute carrier family 12 member 2 (Bu... 31 3.5
sp|P06291|ATPF_MARPO ATP synthase B chain (ATPase subunit I) 31 4.6
>sp|Q9CYH2|CJ058_MOUSE Protein C10orf58 homolog precursor
Length = 218
Score = 49.7 bits (117), Expect = 9e-06
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Frame = +2
Query: 98 KTVQMDSFWKDSKCVITFFRRFG*SFCRLAAKRLSELTPILTSHNVRHXXXXXXXXXXXX 277
+T + W+ + VI RR G CR A L L P L V
Sbjct: 51 RTFKAKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEQVKREV 110
Query: 278 XXXXQYFNGELYVDIDKKSFTNLGFKKYSFMGV--LGAVFSSASRNSLSEARSYGGNMKG 451
YF GE+++D +KK F +K FMG+ LG ++S + + GN++G
Sbjct: 111 EDFQPYFKGEIFLD-EKKKFYGPERRKMMFMGLIRLGVWYNSFRAWN----GGFSGNLEG 165
Query: 452 DGYQNGGTIVVDQG-GSLLFSYKQENVAEHAS 544
+G+ GG V+ G +L ++++ + +
Sbjct: 166 EGFILGGVFVIGSGKQGILLEHREKEFGDRVN 197
>sp|Q9BRX8|CJ058_HUMAN Protein C10orf58 precursor
Length = 229
Score = 46.6 bits (109), Expect = 8e-05
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 98 KTVQMDSFWKDSKCVITFFRRFG*SFCRLAAKRLSELTPILTSHNVRHXXXXXXXXXXXX 277
+T + W+ + VI RR G CR A LS L +L V
Sbjct: 62 RTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEV 121
Query: 278 XXXXQYFNGELYVDIDKKSFTNLGFKKYSFMGVLG-AVFSSASRNSLSEARSYGGNMKGD 454
YF GE+++D +KK F +K FMG + V+ + R + + GN++G+
Sbjct: 122 KDFQPYFKGEIFLD-EKKKFYGPQRRKMMFMGFIRLGVWYNFFR---AWNGGFSGNLEGE 177
Query: 455 GYQNGGTIVVDQG 493
G+ GG VV G
Sbjct: 178 GFILGGVFVVGSG 190
>sp|Q6AXX6|CJ058_RAT Protein C10orf58 homolog precursor
Length = 229
Score = 46.6 bits (109), Expect = 8e-05
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 2/134 (1%)
Frame = +2
Query: 98 KTVQMDSFWKDSKCVITFFRRFG*SFCRLAAKRLSELTPILTSHNVRHXXXXXXXXXXXX 277
+T + W+ + VI RR G CR A L L P L V
Sbjct: 62 RTFKAKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEKVKREV 121
Query: 278 XXXXQYFNGELYVDIDKKSFTNLGFKKYSFMGV--LGAVFSSASRNSLSEARSYGGNMKG 451
YF GE+++D +KK F +K MG+ LG ++S + + GN +G
Sbjct: 122 EDFQPYFKGEIFLD-EKKKFYGPERRKMMLMGLVRLGVWYNSFR----AWKGGFSGNFEG 176
Query: 452 DGYQNGGTIVVDQG 493
+G+ GG V+ G
Sbjct: 177 EGFILGGVFVIGSG 190
>sp|Q9ZUU2|U308_ARATH UPF0308 protein At2g37240, chloroplast precursor
Length = 248
Score = 40.4 bits (93), Expect = 0.006
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 12/156 (7%)
Frame = +2
Query: 62 ALNLVKNASDLTKTVQMDSFWKDSKCVITFFRRFG*SFCRLAAKRLSELTPILTSHNVRH 241
+L+ VK + + WKD K V+ F R FG CR A L+E ++ + V
Sbjct: 70 SLDTVKVLDLRGNEIPISDLWKDRKAVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVAL 129
Query: 242 XXXXXXXXXXXXXXXXQ-YFNGELYVDIDKKSFTNLGFKKYSFMGVLGAVFSSASRNSLS 418
Q F GE+Y D + S+ L F+ + F+ + +
Sbjct: 130 VLIGPGSIDQANTFVEQTKFKGEVYADPNHASYEAL-----EFVSGVSVTFTPKAAMKIL 184
Query: 419 EARSYG-----------GNMKGDGYQNGGTIVVDQG 493
E+ G ++ G+Q GG +V G
Sbjct: 185 ESYMEGYRQDWKLSFMKDTVERGGWQQGGILVAGPG 220
>sp|Q9D1A0|CI021_MOUSE UPF0308 protein C9orf21 homolog
Length = 226
Score = 36.2 bits (82), Expect = 0.11
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Frame = +2
Query: 296 FNGELYVDIDKKSFTNLGFKK---YSFMGVLGAVFSSASRNSLSEA-RSYGG---NMKGD 454
++ E+YVD +++ + LG K+ S G + S+ SL R+ G + +GD
Sbjct: 113 YSHEIYVDPEREIYKRLGMKRGEEISSSGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGD 172
Query: 455 GYQNGGTIVVDQGGSLLFSYKQENVAEH 538
Q GGT+++ G ++ F ++ N +H
Sbjct: 173 PAQQGGTLILGPGNNIHFVHRDRNRLDH 200
>sp|Q7RTV5|CI21_HUMAN UPF0308 protein C9orf21
Length = 226
Score = 35.4 bits (80), Expect = 0.18
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Frame = +2
Query: 296 FNGELYVDIDKKSFTNLGFKKYSFMGVLGA---VFSSASRNSLSEA-RSYGG---NMKGD 454
++ E+YVD +++ + LG K+ + G + S+ SL R+ G + +GD
Sbjct: 113 YSHEIYVDPEREIYKRLGMKRGEEIASSGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGD 172
Query: 455 GYQNGGTIVVDQGGSLLFSYKQENVAEH 538
Q GGT+++ G ++ F ++ N +H
Sbjct: 173 PAQQGGTLILGPGNNIHFIHRDRNRLDH 200
>sp|P55012|S12A2_MOUSE Solute carrier family 12 member 2 (Bumetanide-sensitive
sodium-(potassium)-chloride cotransporter 1)
(Basolateral Na-K-Cl symporter)
Length = 1205
Score = 33.9 bits (76), Expect = 0.54
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 392 SSASRNSLSEARSYGGNMKGDGYQNGGTIVVDQGGSL 502
SS++ +SLS+A GG+ +QNGG V+ +G SL
Sbjct: 144 SSSADDSLSDAAGVGGDGPNVSFQNGGDTVLSEGSSL 180
>sp|Q8AV19|CI021_FUGRU UPF0308 protein C9orf21 homolog (fmHP)
Length = 226
Score = 32.3 bits (72), Expect = 1.6
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Frame = +2
Query: 305 ELYVDIDKKSFTNLGFKKYSFMG--------VLGAVFSSASRNSLSEARSYGGNMKGDGY 460
E+YVD D+ + LG K+ V +F+ ++ + +GD +
Sbjct: 115 EIYVDPDRHIYQKLGMKREETFTDSAQPSPHVKSGIFAGQMKSIWRAMTGPIFDFQGDLH 174
Query: 461 QNGGTIVVDQGGSLLFSYKQENVAEH 538
Q GG I+V G + F + N +H
Sbjct: 175 QQGGAIIVGPGAQVHFCHFDTNRLDH 200
>sp|P55011|S12A2_HUMAN Solute carrier family 12 member 2 (Bumetanide-sensitive
sodium-(potassium)-chloride cotransporter 1)
(Basolateral Na-K-Cl symporter)
Length = 1212
Score = 31.2 bits (69), Expect = 3.5
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 392 SSASRNSLSEARSYGGNMKGDGYQNGGTIVVDQGGSL 502
SS++ +SLS+A G + +QNGG V+ +G SL
Sbjct: 149 SSSAEDSLSDAAGVGVDGPNVSFQNGGDTVLSEGSSL 185
>sp|P06291|ATPF_MARPO ATP synthase B chain (ATPase subunit I)
Length = 184
Score = 30.8 bits (68), Expect = 4.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 556 NVIKTGVLCNIFLFIGKQQTSSLINNNSTTVLVSI 452
N+I GV+ + ++ GK S+L+NN T+L +I
Sbjct: 30 NLINLGVVLGLLVYFGKGVLSNLLNNRKLTILNTI 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,159,110
Number of Sequences: 369166
Number of extensions: 1483486
Number of successful extensions: 3489
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3481
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)