Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01567
(344 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12955|ANK3_HUMAN Ankyrin-3 (ANK-3) (Ankyrin G) 46 3e-05
sp|Q9H765|ASB8_HUMAN Ankyrin repeat and SOCS box protein 8 ... 44 9e-05
sp|Q9J5I3|V018_FOWPV Putative ankyrin repeat protein FPV018 44 9e-05
sp|Q91ZT9|ASB8_MOUSE Ankyrin repeat and SOCS box protein 8 ... 44 9e-05
sp|Q5GIG6|TNI3K_MOUSE Serine/threonine-protein kinase TNNI3... 42 4e-04
sp|Q9J5A7|V155_FOWPV Putative ankyrin repeat protein FPV115 42 4e-04
sp|Q02357|ANK1_MOUSE Ankyrin-1 (Erythrocyte ankyrin) 41 7e-04
sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 (DA... 41 7e-04
sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase, H... 41 0.001
sp|Q05753|AKR_ARATH Ankyrin repeat protein, chloroplast pre... 40 0.001
>sp|Q12955|ANK3_HUMAN Ankyrin-3 (ANK-3) (Ankyrin G)
Length = 4377
Score = 45.8 bits (107), Expect = 3e-05
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKAS-- 176
IK+G INI N++ +ALHL + + ++ LL+ + D + G LH AS
Sbjct: 61 IKNGVDINICNQNGLNALHL---ASKEGHVEVVSELLQREANVDAATKKGNTALHIASLA 117
Query: 177 --AEIARVIVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLL 302
AE+ +V+V + A++N S++G TPL A ++ V LL
Sbjct: 118 GQAEVVKVLVTNG-ANVNAQSQNGFTPLYMAAQENHLEVVKFLL 160
Score = 41.2 bits (95), Expect = 7e-04
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +3
Query: 12 GCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKAS---AE 182
G S++I + + LH+ + A +LL+ PD ++GL PLH A+ +
Sbjct: 555 GASLSITTKKGFTPLHVAAKYGK---LEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQ 611
Query: 183 IARVIVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLL 302
+++L A + ++++G TPL A K + TTLL
Sbjct: 612 KVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLL 651
Score = 35.8 bits (81), Expect = 0.031
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAE 182
+ G S + ++ + LH+ + TT LL+Y D + + G+A +H A+ E
Sbjct: 618 LDQGASPHAAAKNGYTPLHIAAKKNQMDIATT---LLEYGADANAVTRQGIASVHLAAQE 674
Query: 183 --IARV-IVLSDLADLNLSSRDGDTPLTAAIKDRR 278
+ V ++L A++NLS++ G TPL A ++ R
Sbjct: 675 GHVDMVSLLLGRNANVNLSNKSGLTPLHLAAQEDR 709
Score = 32.3 bits (72), Expect = 0.35
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Frame = +3
Query: 18 SINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPL----HKASAEI 185
++N+ N+ + LHL + + AE+L+ D + G PL H + +I
Sbjct: 689 NVNLSNKSGLTPLHLAAQEDR---VNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKI 745
Query: 186 ARVIVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLLRS 308
+L A +N +++G TPL A + + LL++
Sbjct: 746 VN-FLLQHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQN 785
Score = 32.0 bits (71), Expect = 0.45
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +3
Query: 54 LHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAEIARVIVLSDL----ADL 221
LH+ C + I E+LLK+ + E+GL P+H A A + V ++S L A
Sbjct: 404 LHIACKKNR---IKVMELLLKHGASIQAVTESGLTPIHVA-AFMGHVNIVSQLMHHGASP 459
Query: 222 NLSSRDGDTPLTAAIKDRRHTFVTTLLR 305
N ++ G+T L A + + V L++
Sbjct: 460 NTTNVRGETALHMAARSGQAEVVRYLVQ 487
Score = 31.2 bits (69), Expect = 0.77
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +3
Query: 24 NIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKAS----AEIAR 191
++ ++ + LH+ H + I A +LL D N + PLH AS A + +
Sbjct: 229 DVESKSGFTPLHIAAHYGN---INVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVK 285
Query: 192 VIVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLL 302
++ L A ++ +RDG TPL + V LL
Sbjct: 286 LL-LDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLL 321
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAE 182
+ G ++ + + + LH+ CH + I LL++ + +NG PLH+A+ +
Sbjct: 717 VNQGAHVDAQTKMGYTPLHVGCHYGN---IKIVNFLLQHSAKVNAKTKNGYTPLHQAAQQ 773
Query: 183 IARVIV---LSDLADLNLSSRDGDTPLTAA 263
I+ L + A N + +G+T L A
Sbjct: 774 GHTHIINVLLQNNASPNELTVNGNTALGIA 803
>sp|Q9H765|ASB8_HUMAN Ankyrin repeat and SOCS box protein 8 (ASB-8)
Length = 288
Score = 44.3 bits (103), Expect = 9e-05
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLH----K 170
++ G +N + +N +ALH + E+LL+Y +P+ LD N PLH K
Sbjct: 73 LEKGAEVNALDGYNRTALHYAAEKDE----ACVEVLLEYGANPNALDGNRDTPLHWAAFK 128
Query: 171 ASAEIARVIVLSDLADLNLSSRDGDTPLT-AAIK 269
+AE R ++ S A +N + DTPL+ AA+K
Sbjct: 129 NNAECVRALLESG-ASVNALDYNNDTPLSWAAMK 161
>sp|Q9J5I3|V018_FOWPV Putative ankyrin repeat protein FPV018
Length = 700
Score = 44.3 bits (103), Expect = 9e-05
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAE 182
I G +N+RN + ++ +HL C + I ++L+K + + D G+ PL S E
Sbjct: 416 INKGADVNVRNRYGKTPIHLACMYSK---IGNIKVLIKNGANVNERDNYGITPLMICSRE 472
Query: 183 --IARV-IVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLL 302
++ + +L++ AD+N + D +T LT AI+++ LL
Sbjct: 473 GKVSNMEYLLANGADVNQTDYDKNTALTYAIRNKSKECTRVLL 515
>sp|Q91ZT9|ASB8_MOUSE Ankyrin repeat and SOCS box protein 8 (ASB-8)
Length = 288
Score = 44.3 bits (103), Expect = 9e-05
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLH----K 170
++ G +N + +N +ALH + E+LL+Y +P+ LD N PLH K
Sbjct: 73 LEKGAEVNALDGYNRTALHYAAERDE----ACVEVLLEYGANPNALDGNRDTPLHWAAFK 128
Query: 171 ASAEIARVIVLSDLADLNLSSRDGDTPLT-AAIK 269
+AE R ++ S A +N + DTPL+ AA+K
Sbjct: 129 NNAECVRALLESG-ASVNALDYNNDTPLSWAAMK 161
>sp|Q5GIG6|TNI3K_MOUSE Serine/threonine-protein kinase TNNI3K (TNNI3-interacting kinase)
(Cardiac ankyrin repeat kinase)
Length = 834
Score = 42.0 bits (97), Expect = 4e-04
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAE 182
++ G ++N+++ + LH+ + + +LLK+ D + E G PLH ASA+
Sbjct: 154 LQHGANVNVQDAVFFTPLHIAAYYGHE---QVTSVLLKFGADVNVSGEVGDRPLHLASAK 210
Query: 183 ----IARVIVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLLRS 308
I +++V + AD+N + PL + H V+ LL+S
Sbjct: 211 GFFNIVKLLVEGNKADVNAQDNEDHVPLHFCSRFGHHNIVSYLLQS 256
>sp|Q9J5A7|V155_FOWPV Putative ankyrin repeat protein FPV115
Length = 542
Score = 42.0 bits (97), Expect = 4e-04
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKA--- 173
I+ G IN +++ ++ALH C+ + I T + ++KY D + D GL PLH A
Sbjct: 239 IEIGLDINTKDKKGKTALHYACNSIN--CIETVKEIMKYGADINVKDREGLTPLHSACKY 296
Query: 174 -SAEIARVI--------VLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTT 296
++++++ V + LNL+ G+ L + ++ F+T+
Sbjct: 297 GDLKLSKLLIEYGADVKVKTTSTVLNLAVESGNVELVKFLIEKNPEFITS 346
>sp|Q02357|ANK1_MOUSE Ankyrin-1 (Erythrocyte ankyrin)
Length = 1862
Score = 41.2 bits (95), Expect = 7e-04
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Frame = +3
Query: 24 NIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKAS--AEIARV- 194
N+ N+ + LHL+ + + ++ A++L+K+ + D G PLH AS I V
Sbjct: 658 NLGNKSGLTPLHLV---SQEGHVLVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVK 714
Query: 195 IVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLLRS 308
+L AD+N ++ G +PL A + VT LL++
Sbjct: 715 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 752
Score = 37.0 bits (84), Expect = 0.014
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAE 182
+ G N R + + LH+ C K +I E+LLK D + E+GL PLH AS
Sbjct: 354 LDKGAKPNSRALNGFTPLHIAC---KKNHIRVMELLLKTGASIDAVTESGLTPLHVASF- 409
Query: 183 IARVIVLSDL----ADLNLSSRDGDTPLTAAIKDRRHTFVTTLL 302
+ + ++ +L A N+S+ +TPL A + HT V L
Sbjct: 410 MGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR-AGHTEVAKYL 452
Score = 34.3 bits (77), Expect = 0.091
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +3
Query: 96 TAEILLKYHIDPDTLDENGLAPLHKA----SAEIARVIVLSDLADLNLSSRDGDTPLTAA 263
TA +LL+ +PD L + G PLH A + +A+ ++L+ A +N + ++G TPL A
Sbjct: 184 TAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQ-LLLNRGASVNFTPQNGITPLHIA 242
Query: 264 IKDRRHTFVTTLL 302
+ V LL
Sbjct: 243 SRRGNVIMVRLLL 255
Score = 31.6 bits (70), Expect = 0.59
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 108 LLKYHIDPDTLDENGLAPLHKASAEIARVIV---LSDLADLNLSSRDGDTPLTAAIKDRR 278
L+ Y + + + G PL+ A+ E +V L + A+ N+++ DG TPL A++
Sbjct: 93 LVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGH 152
Query: 279 HTFVTTLL 302
V L+
Sbjct: 153 ENVVAHLI 160
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +3
Query: 90 ITTAEILLKYHIDPDTLDENGLAPLHKA----SAEIARVIVLSDLADLNLSSRDGDTPLT 257
+ AE+LL++ P+ +NGL PLH A + +I + ++L + + +G TPL
Sbjct: 545 VRLAELLLEHDAHPNAAGKNGLTPLHVAVHHNNLDIVK-LLLPRGGSPHSPAWNGYTPLH 603
Query: 258 AAIKDRRHTFVTTLLR 305
A K + +LL+
Sbjct: 604 IAAKQNQIEVARSLLQ 619
Score = 30.4 bits (67), Expect = 1.3
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +3
Query: 54 LHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAE---IARVIVLSDLADLN 224
LH+ Q I A LL+Y + G+ PLH A+ E ++LS A+ N
Sbjct: 602 LHIAAKQNQ---IEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANGN 658
Query: 225 LSSRDGDTPLTAAIKDRRHTFVTTLL 302
L ++ G TPL + H V +L
Sbjct: 659 LGNKSGLTPL-HLVSQEGHVLVADVL 683
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +3
Query: 54 LHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKAS--AEIARVIVLSDL-ADLN 224
LH+ H + + A++LL + +NG+ PLH AS + V +L D A +
Sbjct: 206 LHIAAHYEN---LNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIE 262
Query: 225 LSSRDGDTPLTAAIKD 272
++D TPL A ++
Sbjct: 263 TRTKDELTPLHCAARN 278
Score = 28.1 bits (61), Expect = 6.6
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = +3
Query: 12 GCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKAS----A 179
G I R + + LH ++ +EILL + +NGL+P+H A+
Sbjct: 258 GAQIETRTKDELTPLHCAARNG---HVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHL 314
Query: 180 EIARVIVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLL 302
+ R ++L A+++ + D TPL A H LL
Sbjct: 315 DCVR-LLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLL 354
>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 (DAP kinase 1)
Length = 1432
Score = 41.2 bits (95), Expect = 7e-04
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +3
Query: 6 KSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAEI 185
++GC++NI+N E+ L +++ Y E L ++ D + D++G LH A
Sbjct: 501 EAGCNVNIKNREGETP---LLTASARGYHDIVECLAEHGADLNACDKDGHIALHLAVRRC 557
Query: 186 ARVIV---LSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTL 299
++ LS ++ R G+TPL A KD V L
Sbjct: 558 QMEVIKTLLSQGCFVDYQDRHGNTPLHVACKDGNMPIVVAL 598
Score = 36.2 bits (82), Expect = 0.024
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = +3
Query: 15 CSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKAS----AE 182
C ++++++ E ALH+ + ++L + +P+ D+ PLH A+
Sbjct: 436 CPLDVKDKSGEMALHVAARYGHA-DVAQVQVLCSFGSNPNIQDKEEETPLHCAAWHGYYS 494
Query: 183 IARVIVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTL 299
+A+ + + ++N+ +R+G+TPL A H V L
Sbjct: 495 VAKALCEAG-CNVNIKNREGETPLLTASARGYHDIVECL 532
Score = 31.2 bits (69), Expect = 0.77
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Frame = +3
Query: 12 GCSINIRNEHNESALHLLCHQTSKW--YITTAEILLKYHIDPDTLDENGLAPLHKASAEI 185
G + NI+++ E+ LH + W Y + A+ L + + + + G PL ASA
Sbjct: 470 GSNPNIQDKEEETPLHC-----AAWHGYYSVAKALCEAGCNVNIKNREGETPLLTASARG 524
Query: 186 ARVIV---LSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLL 302
IV ADLN +DG L A++ + + TLL
Sbjct: 525 YHDIVECLAEHGADLNACDKDGHIALHLAVRRCQMEVIKTLL 566
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKAS-- 176
+ GC ++ ++ H + LH+ C + + L + + + D ++ G PLH A+
Sbjct: 566 LSQGCFVDYQDRHGNTPLHVACKDGNMPIVVA---LCEANCNLDISNKYGRTPLHLAANN 622
Query: 177 --AEIARVIVLSDLADLNLSSRDGDTPLTAAIKDRRHTFVTTLL 302
++ R + L A + + DG T A + +H V LL
Sbjct: 623 GILDVVRYLCLMG-ASVEALTTDGKTAEDLA-RSEQHEHVAGLL 664
>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-9 specific 5 (Histone
H3-K9 methyltransferase 5) (H3-K9-HMTase 5) (Euchromatic
histone-lysine N-methyltransferase 1) (Eu-HMTase1)
(G9a-like protein 1) (GLP1)
Length = 1267
Score = 40.8 bits (94), Expect = 0.001
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +3
Query: 3 IKSGCSINIRNEHNESALHLLCHQTSKWYITTAEILLKYHIDPDTLDENGLAPLHKASAE 182
+ G INIR+ LH + AEILL D ++ +G +PLH A+ E
Sbjct: 862 LSKGSDINIRDNEENICLHWAAFSGC---VDIAEILLAAKCDLHAVNIHGDSPLHIAARE 918
Query: 183 ---IARVIVLSDLADLNLSSRDGDTPLTAA 263
V+ LS +D+ L +++G+TPL A
Sbjct: 919 NRYDCVVLFLSRDSDVTLKNKEGETPLQCA 948
>sp|Q05753|AKR_ARATH Ankyrin repeat protein, chloroplast precursor (AKRP)
Length = 435
Score = 40.4 bits (93), Expect = 0.001
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 LLKYHIDPDTLDENGLAPLH----KASAEIARVIVLSDLADLNLSSRDGDTPLTAAIKDR 275
LL+ +P LD+ G +H ASA ++++L + AD+N RDG TPL A++ R
Sbjct: 312 LLRESANPFVLDDEGATLMHYAVQTASAPTIKLLLLYN-ADINAQDRDGWTPLHVAVQAR 370
Query: 276 RHTFVTTLL 302
R V LL
Sbjct: 371 RSDIVKLLL 379
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,070,939
Number of Sequences: 369166
Number of extensions: 524505
Number of successful extensions: 1775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)