Planaria EST Database


DrC_01565

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01565
         (912 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P2E2|KIF17_HUMAN  Kinesin-like protein KIF17 (KIF3-rela...    33   1.1  
sp|Q9V9K7|ARS2_DROME  Arsenite-resistance protein 2 homolog        32   2.5  
sp|P53388|DIP5_YEAST  Dicarboxylic amino acid permease             32   3.2  
sp|P75198|Y582_MYCPN  Hypothetical lipoprotein MPN582 precur...    31   4.2  
sp|P53214|YG1F_YEAST  Hypothetical 57.5 kDa protein in VMA7-...    30   7.2  
>sp|Q9P2E2|KIF17_HUMAN Kinesin-like protein KIF17 (KIF3-related motor protein)
          Length = 1029

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = +3

Query: 144  ETILNDSSLITDDCTHFSKITPKVHLRRRSKSYAVSVEPNNKSLNQNSSFISGSPFIRQS 323
            E IL +S    D+   F KI P   + + S   AVS  P NK   + S+  +G P + + 
Sbjct: 878  EKILRESCW--DEDNGFWKI-PHPVITKTSLPVAVSTGPQNKPARKTSAADNGEPNMEED 934

Query: 324  KFRIPLSTKSSSDL 365
            ++R+ LS  +S ++
Sbjct: 935  RYRLMLSRSNSENI 948
>sp|Q9V9K7|ARS2_DROME Arsenite-resistance protein 2 homolog
          Length = 943

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 72  NKQNTDEQIDNSIPKSHMSFNPIPETILNDSSLITDD 182
           +K NT E+IDN++    +S NPI  T   D S + +D
Sbjct: 445 SKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEED 481
>sp|P53388|DIP5_YEAST Dicarboxylic amino acid permease
          Length = 608

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 156 NDSSLITDDCTHFSKITPKVHLRRRSKSYAVSVEPNNKSLNQNSSFISGSPFIRQSKFRI 335
           N SSL +D   ++SK  P     +  + Y + +E NN S   + S  S SP  R   F +
Sbjct: 16  NSSSLDSDHDAYYSKQNPDNFPVKEQEIYNIDLEENNVS---SRSSTSTSPSARDDSFAV 72

Query: 336 P 338
           P
Sbjct: 73  P 73
>sp|P75198|Y582_MYCPN Hypothetical lipoprotein MPN582 precursor (D02_orf439)
          Length = 439

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 17/85 (20%), Positives = 39/85 (45%)
 Frame = +3

Query: 108 IPKSHMSFNPIPETILNDSSLITDDCTHFSKITPKVHLRRRSKSYAVSVEPNNKSLNQNS 287
           +P S  +F     T+L  ++ I  D  +++    + + ++R + + V ++PN   ++   
Sbjct: 155 LPNSTQAFVAAQPTVLPKTAFIAHDFVNYTLSKDQKNKKQREQQWKVQIKPNKDEVH--- 211

Query: 288 SFISGSPFIRQSKFRIPLSTKSSSD 362
                 P+   +   +PL   +SSD
Sbjct: 212 ------PYADSAVLELPLFLNNSSD 230
>sp|P53214|YG1F_YEAST Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic region
          Length = 551

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
 Frame = +3

Query: 48  SFLISDSSNKQNTDEQIDNSIPKSHMSFNPIPETILNDSSLITDDCTHFSKITPKVHLRR 227
           S +IS SS+      +  +S+  S +S +    ++   SS  +   +  S++T   +   
Sbjct: 169 SLVISTSSSTFTFSSESSSSLISSSISTSVSTSSVYVPSSSTSSPPSSSSELTSSSYSSS 228

Query: 228 RSKS----YAVSVEPNNKSLNQNSSFISGSPFIRQSKFRIPLSTKSSSDLY 368
            S S    Y+ S   ++ S + +SS  S S     S F   LST SSS +Y
Sbjct: 229 SSSSTLFSYSSSFSSSSSSSSSSSSSSSSSSSSSSSYFT--LSTSSSSSIY 277
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,805,352
Number of Sequences: 369166
Number of extensions: 1333904
Number of successful extensions: 3002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3000
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)