Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01565
(912 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P2E2|KIF17_HUMAN Kinesin-like protein KIF17 (KIF3-rela... 33 1.1
sp|Q9V9K7|ARS2_DROME Arsenite-resistance protein 2 homolog 32 2.5
sp|P53388|DIP5_YEAST Dicarboxylic amino acid permease 32 3.2
sp|P75198|Y582_MYCPN Hypothetical lipoprotein MPN582 precur... 31 4.2
sp|P53214|YG1F_YEAST Hypothetical 57.5 kDa protein in VMA7-... 30 7.2
>sp|Q9P2E2|KIF17_HUMAN Kinesin-like protein KIF17 (KIF3-related motor protein)
Length = 1029
Score = 33.1 bits (74), Expect = 1.1
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +3
Query: 144 ETILNDSSLITDDCTHFSKITPKVHLRRRSKSYAVSVEPNNKSLNQNSSFISGSPFIRQS 323
E IL +S D+ F KI P + + S AVS P NK + S+ +G P + +
Sbjct: 878 EKILRESCW--DEDNGFWKI-PHPVITKTSLPVAVSTGPQNKPARKTSAADNGEPNMEED 934
Query: 324 KFRIPLSTKSSSDL 365
++R+ LS +S ++
Sbjct: 935 RYRLMLSRSNSENI 948
>sp|Q9V9K7|ARS2_DROME Arsenite-resistance protein 2 homolog
Length = 943
Score = 32.0 bits (71), Expect = 2.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 72 NKQNTDEQIDNSIPKSHMSFNPIPETILNDSSLITDD 182
+K NT E+IDN++ +S NPI T D S + +D
Sbjct: 445 SKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEED 481
>sp|P53388|DIP5_YEAST Dicarboxylic amino acid permease
Length = 608
Score = 31.6 bits (70), Expect = 3.2
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 156 NDSSLITDDCTHFSKITPKVHLRRRSKSYAVSVEPNNKSLNQNSSFISGSPFIRQSKFRI 335
N SSL +D ++SK P + + Y + +E NN S + S S SP R F +
Sbjct: 16 NSSSLDSDHDAYYSKQNPDNFPVKEQEIYNIDLEENNVS---SRSSTSTSPSARDDSFAV 72
Query: 336 P 338
P
Sbjct: 73 P 73
>sp|P75198|Y582_MYCPN Hypothetical lipoprotein MPN582 precursor (D02_orf439)
Length = 439
Score = 31.2 bits (69), Expect = 4.2
Identities = 17/85 (20%), Positives = 39/85 (45%)
Frame = +3
Query: 108 IPKSHMSFNPIPETILNDSSLITDDCTHFSKITPKVHLRRRSKSYAVSVEPNNKSLNQNS 287
+P S +F T+L ++ I D +++ + + ++R + + V ++PN ++
Sbjct: 155 LPNSTQAFVAAQPTVLPKTAFIAHDFVNYTLSKDQKNKKQREQQWKVQIKPNKDEVH--- 211
Query: 288 SFISGSPFIRQSKFRIPLSTKSSSD 362
P+ + +PL +SSD
Sbjct: 212 ------PYADSAVLELPLFLNNSSD 230
>sp|P53214|YG1F_YEAST Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic region
Length = 551
Score = 30.4 bits (67), Expect = 7.2
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +3
Query: 48 SFLISDSSNKQNTDEQIDNSIPKSHMSFNPIPETILNDSSLITDDCTHFSKITPKVHLRR 227
S +IS SS+ + +S+ S +S + ++ SS + + S++T +
Sbjct: 169 SLVISTSSSTFTFSSESSSSLISSSISTSVSTSSVYVPSSSTSSPPSSSSELTSSSYSSS 228
Query: 228 RSKS----YAVSVEPNNKSLNQNSSFISGSPFIRQSKFRIPLSTKSSSDLY 368
S S Y+ S ++ S + +SS S S S F LST SSS +Y
Sbjct: 229 SSSSTLFSYSSSFSSSSSSSSSSSSSSSSSSSSSSSYFT--LSTSSSSSIY 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,805,352
Number of Sequences: 369166
Number of extensions: 1333904
Number of successful extensions: 3002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3000
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)