Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01552
(451 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80UU9|PGRC2_MOUSE Membrane associated progesterone rece... 115 3e-26
sp|Q5XIU9|PGRC2_RAT Membrane associated progesterone recept... 115 3e-26
sp|O15173|PGRC2_HUMAN Membrane associated progesterone rece... 115 4e-26
sp|Q95250|PGRC1_PIG Membrane associated progesterone recept... 111 6e-25
sp|O55022|PGRC1_MOUSE Membrane associated progesterone rece... 110 1e-24
sp|P70580|PGRC1_RAT Membrane associated progesterone recept... 110 1e-24
sp|O00264|PGRC1_HUMAN Membrane associated progesterone rece... 109 2e-24
sp|O13995|YL81_SCHPO Hypothetical protein C25B8.01 in chrom... 74 2e-13
sp|Q12091|DAP1_YEAST Damage response protein 1 65 9e-11
sp|Q9M2Z4|SBP2_ARATH Putative steroid binding protein 2 (At... 64 1e-10
>sp|Q80UU9|PGRC2_MOUSE Membrane associated progesterone receptor component 2
Length = 214
Score = 115 bits (289), Expect = 3e-26
Identities = 53/93 (56%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLKEDYDDISDLSPSEMDQLKEWEMQ 182
VT GS FYGP GPYG AGRDASR LATFCLD L+++YDD+SDL+ +M+ ++EWEMQ
Sbjct: 121 VTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQ 180
Query: 183 FESKYYKIGKLLRPG-EVCEIIDSEEDDSNSQQ 278
F+ KY +G+LL+PG E E D E+ +S+Q
Sbjct: 181 FKEKYDYVGRLLKPGEEPSEYTDEEDTKDHSKQ 213
>sp|Q5XIU9|PGRC2_RAT Membrane associated progesterone receptor component 2
Length = 217
Score = 115 bits (289), Expect = 3e-26
Identities = 53/93 (56%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLKEDYDDISDLSPSEMDQLKEWEMQ 182
VT GS FYGP GPYG AGRDASR LATFCLD L+++YDD+SDL+ +M+ ++EWEMQ
Sbjct: 124 VTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQ 183
Query: 183 FESKYYKIGKLLRPG-EVCEIIDSEEDDSNSQQ 278
F+ KY +G+LL+PG E E D E+ +S+Q
Sbjct: 184 FKEKYDYVGRLLKPGEEPSEYTDEEDTKDHSKQ 216
>sp|O15173|PGRC2_HUMAN Membrane associated progesterone receptor component 2 (Progesterone
membrane binding protein) (Steroid receptor protein DG6)
Length = 223
Score = 115 bits (288), Expect = 4e-26
Identities = 54/93 (58%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLKEDYDDISDLSPSEMDQLKEWEMQ 182
VT GS FYGP GPYG AGRDASR LATFCLD L+++YDD+SDL+ +M+ ++EWEMQ
Sbjct: 130 VTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQ 189
Query: 183 FESKYYKIGKLLRPGEVCEIIDSEED--DSNSQ 275
F+ KY +G+LL+PGE EED D N Q
Sbjct: 190 FKEKYDYVGRLLKPGEEPSEYTDEEDTKDHNKQ 222
>sp|Q95250|PGRC1_PIG Membrane associated progesterone receptor component 1
Length = 194
Score = 111 bits (278), Expect = 6e-25
Identities = 48/86 (55%), Positives = 62/86 (72%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLKEDYDDISDLSPSEMDQLKEWEMQ 182
VT G FYGP GPYG AGRDASR LATFCLD LK++YDD+SDL+P++ + L +W+ Q
Sbjct: 99 VTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQ 158
Query: 183 FESKYYKIGKLLRPGEVCEIIDSEED 260
F KY+ +GKLL+ GE + EE+
Sbjct: 159 FTFKYHHVGKLLKEGEEPTVYSDEEE 184
>sp|O55022|PGRC1_MOUSE Membrane associated progesterone receptor component 1
Length = 195
Score = 110 bits (275), Expect = 1e-24
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLKEDYDDISDLSPSEMDQLKEWEMQ 182
VT G FYGP GPYG AGRDASR LATFCLD LK++YDD+SDL+P++ + L +W+ Q
Sbjct: 100 VTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQ 159
Query: 183 FESKYYKIGKLLRPGEVCEIIDSEED 260
F KY+ +GKLL+ GE + +E+
Sbjct: 160 FTFKYHHVGKLLKEGEEPTVYSDDEE 185
>sp|P70580|PGRC1_RAT Membrane associated progesterone receptor component 1 (Acidic 25
kDa protein) (25-DX)
Length = 195
Score = 110 bits (275), Expect = 1e-24
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLKEDYDDISDLSPSEMDQLKEWEMQ 182
VT G FYGP GPYG AGRDASR LATFCLD LK++YDD+SDL+P++ + L +W+ Q
Sbjct: 100 VTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQ 159
Query: 183 FESKYYKIGKLLRPGEVCEIIDSEED 260
F KY+ +GKLL+ GE + +E+
Sbjct: 160 FTFKYHHVGKLLKEGEEPTVYSDDEE 185
>sp|O00264|PGRC1_HUMAN Membrane associated progesterone receptor component 1 (mPR)
Length = 195
Score = 109 bits (273), Expect = 2e-24
Identities = 48/86 (55%), Positives = 61/86 (70%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLKEDYDDISDLSPSEMDQLKEWEMQ 182
VT G FYGP GPYG AGRDASR LATFCLD LK++YDD+SDL+ ++ + L +WE Q
Sbjct: 100 VTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQ 159
Query: 183 FESKYYKIGKLLRPGEVCEIIDSEED 260
F KY+ +GKLL+ GE + EE+
Sbjct: 160 FTFKYHHVGKLLKEGEEPTVYSDEEE 185
>sp|O13995|YL81_SCHPO Hypothetical protein C25B8.01 in chromosome I
Length = 166
Score = 73.6 bits (179), Expect = 2e-13
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCL----KEDYDDISDLSPSEMDQLKE 170
VT GS FYGP GPY AG DASR LA D+ + E+ DD SDL+ E L +
Sbjct: 70 VTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALND 129
Query: 171 WEMQFESKYYKIGKLLRPGE 230
W+ F+ KY +G+L+ P E
Sbjct: 130 WKAFFDQKYQAVGRLISpre 149
>sp|Q12091|DAP1_YEAST Damage response protein 1
Length = 152
Score = 64.7 bits (156), Expect = 9e-11
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +3
Query: 6 TSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLK---EDYDDISDLSPSEMDQLKEWE 176
T G FYGP+GPY AG DASR LA D +K + D + DL+ ++D L EW+
Sbjct: 72 TRGRQFYGPSGPYTNFAGHDASRGLALNSFDLDVIKDWDQPIDPLDDLTKEQIDALDEWQ 131
Query: 177 MQFESKYYKIGKLL-RPG 227
FE+KY IG L+ PG
Sbjct: 132 EHFENKYPCIGTLIPEPG 149
>sp|Q9M2Z4|SBP2_ARATH Putative steroid binding protein 2 (AtMP2)
Length = 233
Score = 64.3 bits (155), Expect = 1e-10
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +3
Query: 3 VTSGSNFYGPNGPYGCLAGRDASRALATFCLDNSCLKEDYDDISDLSPSEMDQLKEWEMQ 182
V+ FYGP GPY AG+DASRALA ++ L DIS L E++ L++WE +
Sbjct: 99 VSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLT---GDISGLGAFELEALQDWEYK 155
Query: 183 FESKYYKIGKL 215
F SKY K+G +
Sbjct: 156 FMSKYVKVGTI 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,833,959
Number of Sequences: 369166
Number of extensions: 812498
Number of successful extensions: 2207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2194
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)