Planaria EST Database


DrC_01551

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01551
         (861 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57235|SYGB_BUCAI  Glycyl-tRNA synthetase beta chain (Gly...    33   1.0  
sp|Q58751|YD56_METJA  Hypothetical protein MJ1356                  32   3.0  
>sp|P57235|SYGB_BUCAI Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain)
           (GlyRS)
          Length = 690

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = -1

Query: 537 LKELQRDKSPGGIISLISPHFLKSFIKTLFLENISHKHL 421
           L E+  ++ P  ++S IS +F K+FIK L   NIS+K++
Sbjct: 7   LIEIGTEELPARLLSKISLYFYKNFIKELDFHNISYKNI 45
>sp|Q58751|YD56_METJA Hypothetical protein MJ1356
          Length = 189

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
 Frame = +2

Query: 443 SRNKVLINDFKKWGEIKEIIPPGDLSRCNSFKDLYYEIDKRGNYELFVEFLQSYPRTPI- 619
           S+ K L  DFK W  IK +    ++S  +   + Y EI KRG   +  +FL  Y    I 
Sbjct: 64  SKRKELEEDFKNW--IKGLF---EISNDSDLNEFYKEIVKRGIKYVEKDFLPEYLTAIII 118

Query: 620 ---DDLKSKF-NALKDSAMTCMECEQRIYN*TILEQNTCKFICLTIAM*FLVFKNK*LIE 787
              D LK+K    LK+ A   ++         IL+    + I L +A  ++ F++K +++
Sbjct: 119 KIEDRLKNKLKEELKEDAQEIVD---------ILDDLLKRVILLNVAA-YMNFESK-VLD 167

Query: 788 YI 793
           YI
Sbjct: 168 YI 169
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,519,522
Number of Sequences: 369166
Number of extensions: 1681924
Number of successful extensions: 3759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3759
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)