Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01551
(861 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57235|SYGB_BUCAI Glycyl-tRNA synthetase beta chain (Gly... 33 1.0
sp|Q58751|YD56_METJA Hypothetical protein MJ1356 32 3.0
>sp|P57235|SYGB_BUCAI Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain)
(GlyRS)
Length = 690
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = -1
Query: 537 LKELQRDKSPGGIISLISPHFLKSFIKTLFLENISHKHL 421
L E+ ++ P ++S IS +F K+FIK L NIS+K++
Sbjct: 7 LIEIGTEELPARLLSKISLYFYKNFIKELDFHNISYKNI 45
>sp|Q58751|YD56_METJA Hypothetical protein MJ1356
Length = 189
Score = 31.6 bits (70), Expect = 3.0
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Frame = +2
Query: 443 SRNKVLINDFKKWGEIKEIIPPGDLSRCNSFKDLYYEIDKRGNYELFVEFLQSYPRTPI- 619
S+ K L DFK W IK + ++S + + Y EI KRG + +FL Y I
Sbjct: 64 SKRKELEEDFKNW--IKGLF---EISNDSDLNEFYKEIVKRGIKYVEKDFLPEYLTAIII 118
Query: 620 ---DDLKSKF-NALKDSAMTCMECEQRIYN*TILEQNTCKFICLTIAM*FLVFKNK*LIE 787
D LK+K LK+ A ++ IL+ + I L +A ++ F++K +++
Sbjct: 119 KIEDRLKNKLKEELKEDAQEIVD---------ILDDLLKRVILLNVAA-YMNFESK-VLD 167
Query: 788 YI 793
YI
Sbjct: 168 YI 169
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,519,522
Number of Sequences: 369166
Number of extensions: 1681924
Number of successful extensions: 3759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3759
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)