Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01541
(487 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1P6|N4AM_MOUSE NADH-ubiquinone oxidoreductase subunit... 48 1e-05
sp|Q05752|N4AM_BOVIN NADH-ubiquinone oxidoreductase subunit... 47 2e-05
sp|O95182|N4AM_HUMAN NADH-ubiquinone oxidoreductase subunit... 45 1e-04
sp|Q9PWL6|HXA9A_BRARE Homeobox protein Hox-A9a (Hoxx9) 30 3.9
sp|Q7VIU8|RUVB_HELHP Holliday junction DNA helicase ruvB 29 5.0
sp|Q9D684|RIN2_MOUSE Ras and Rab interactor 2 (Ras interact... 29 5.0
sp|P24095|LOXX_SOYBN Seed lipoxygenase 29 6.6
sp|P79114|MYO10_BOVIN Myosin-10 (Myosin X) 28 8.6
sp|P27662|VGLG_VHSV0 Spike glycoprotein precursor 28 8.6
sp|Q9HD67|MYO10_HUMAN Myosin-10 (Myosin X) 28 8.6
>sp|Q9Z1P6|N4AM_MOUSE NADH-ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
(CI-B14.5a)
Length = 113
Score = 47.8 bits (112), Expect = 1e-05
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 132 LRYEGMIAARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEK 311
LRY+ IA R+ PP +P G HKLS N Y R+ R EV PP II S + E
Sbjct: 26 LRYQE-IAKRTQPPPKLPVGPSHKLSNNYYCTRDGRREVVPPSIIMSSQKALVSGKAAES 84
Query: 312 TEIESS--KNLFPLP 350
+ + ++ K + P P
Sbjct: 85 SAMAATEKKAVTPAP 99
>sp|Q05752|N4AM_BOVIN NADH-ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
(CI-B14.5a)
Length = 113
Score = 47.0 bits (110), Expect = 2e-05
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 132 LRYEGMIAARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEK 311
LRY+ I+ R+ PP +P G HKLS N Y R+ R E PP I+ S + + E
Sbjct: 26 LRYQE-ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRREAMPPSIVMSSQKVLVAGKPAES 84
Query: 312 TEIESS--KNLFPLPGV 356
+ + +S K + P P +
Sbjct: 85 SAVAASEKKAVSPAPPI 101
>sp|O95182|N4AM_HUMAN NADH-ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
(CI-B14.5a)
Length = 113
Score = 44.7 bits (104), Expect = 1e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 132 LRYEGMIAARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEK 311
LRY+ I+ R+ PP +P G HKLS N Y R+ R E PP II S + E
Sbjct: 26 LRYQE-ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAES 84
Query: 312 TEIESS--KNLFPLPGV 356
+ + ++ K + P P +
Sbjct: 85 SAVAATEKKAVTPAPPI 101
>sp|Q9PWL6|HXA9A_BRARE Homeobox protein Hox-A9a (Hoxx9)
Length = 250
Score = 29.6 bits (65), Expect = 3.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 171 PANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEKTEIESSK 332
P P V+H +K+D + N G P I Q +V G KTE ESS+
Sbjct: 103 PQTEPPTVNHNHAKSDTNETNDDGTEYSPHTILQPEVF-TNGGCSTKTEAESSR 155
>sp|Q7VIU8|RUVB_HELHP Holliday junction DNA helicase ruvB
Length = 336
Score = 29.3 bits (64), Expect = 5.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 153 AARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPK 260
AA S A I + L N YL+R A+G VA PK
Sbjct: 285 AAMSEDEATIEDVIEPYLLANGYLERTAKGRVASPK 320
>sp|Q9D684|RIN2_MOUSE Ras and Rab interactor 2 (Ras interaction/interference protein 2)
Length = 903
Score = 29.3 bits (64), Expect = 5.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 156 ARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEKTEIESSKN 335
+R+ P ++P V+H N L + PP++ Q+ ++ ES K T S++
Sbjct: 326 SRTEPQTSMPETVNHSKHGNVALLGTKPTPIPPPRLKKQASFLEAESSAKTLTARRPSRS 385
Query: 336 LFPLP 350
P P
Sbjct: 386 SEPEP 390
>sp|P24095|LOXX_SOYBN Seed lipoxygenase
Length = 864
Score = 28.9 bits (63), Expect = 6.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 85 INGVRRSLLIRADAMIKNNYLPYKIYID 2
ING+ R LI AD +I+ ++LP K I+
Sbjct: 564 INGLARQSLINADGIIEKSFLPGKYSIE 591
>sp|P79114|MYO10_BOVIN Myosin-10 (Myosin X)
Length = 2052
Score = 28.5 bits (62), Expect = 8.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 72 LTPLMRKIRDIFNQRVYNNGLRYEGMI 152
+ P M+K+ D F+Q V N LRY GM+
Sbjct: 637 IKPNMQKMPDQFDQAVVVNQLRYSGML 663
>sp|P27662|VGLG_VHSV0 Spike glycoprotein precursor
Length = 507
Score = 28.5 bits (62), Expect = 8.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 110 VENVSNLSH*WSKTIFTHPCRCHD 39
VEN+S W ++THP C D
Sbjct: 28 VENISTYHADWDTPLYTHPSNCRD 51
>sp|Q9HD67|MYO10_HUMAN Myosin-10 (Myosin X)
Length = 2058
Score = 28.5 bits (62), Expect = 8.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 72 LTPLMRKIRDIFNQRVYNNGLRYEGMI 152
+ P M+K+ D F+Q V N LRY GM+
Sbjct: 637 IKPNMQKMPDQFDQAVVLNQLRYSGML 663
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,971,527
Number of Sequences: 369166
Number of extensions: 899365
Number of successful extensions: 2150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)