Planaria EST Database


DrC_01541

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01541
         (487 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z1P6|N4AM_MOUSE  NADH-ubiquinone oxidoreductase subunit...    48   1e-05
sp|Q05752|N4AM_BOVIN  NADH-ubiquinone oxidoreductase subunit...    47   2e-05
sp|O95182|N4AM_HUMAN  NADH-ubiquinone oxidoreductase subunit...    45   1e-04
sp|Q9PWL6|HXA9A_BRARE  Homeobox protein Hox-A9a (Hoxx9)            30   3.9  
sp|Q7VIU8|RUVB_HELHP  Holliday junction DNA helicase ruvB          29   5.0  
sp|Q9D684|RIN2_MOUSE  Ras and Rab interactor 2 (Ras interact...    29   5.0  
sp|P24095|LOXX_SOYBN  Seed lipoxygenase                            29   6.6  
sp|P79114|MYO10_BOVIN  Myosin-10 (Myosin X)                        28   8.6  
sp|P27662|VGLG_VHSV0  Spike glycoprotein precursor                 28   8.6  
sp|Q9HD67|MYO10_HUMAN  Myosin-10 (Myosin X)                        28   8.6  
>sp|Q9Z1P6|N4AM_MOUSE NADH-ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
           (CI-B14.5a)
          Length = 113

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = +3

Query: 132 LRYEGMIAARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEK 311
           LRY+  IA R+ PP  +P G  HKLS N Y  R+ R EV PP II  S    +     E 
Sbjct: 26  LRYQE-IAKRTQPPPKLPVGPSHKLSNNYYCTRDGRREVVPPSIIMSSQKALVSGKAAES 84

Query: 312 TEIESS--KNLFPLP 350
           + + ++  K + P P
Sbjct: 85  SAMAATEKKAVTPAP 99
>sp|Q05752|N4AM_BOVIN NADH-ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
           (CI-B14.5a)
          Length = 113

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +3

Query: 132 LRYEGMIAARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEK 311
           LRY+  I+ R+ PP  +P G  HKLS N Y  R+ R E  PP I+  S  + +     E 
Sbjct: 26  LRYQE-ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRREAMPPSIVMSSQKVLVAGKPAES 84

Query: 312 TEIESS--KNLFPLPGV 356
           + + +S  K + P P +
Sbjct: 85  SAVAASEKKAVSPAPPI 101
>sp|O95182|N4AM_HUMAN NADH-ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
           (CI-B14.5a)
          Length = 113

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 132 LRYEGMIAARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEK 311
           LRY+  I+ R+ PP  +P G  HKLS N Y  R+ R E  PP II  S    +     E 
Sbjct: 26  LRYQE-ISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAES 84

Query: 312 TEIESS--KNLFPLPGV 356
           + + ++  K + P P +
Sbjct: 85  SAVAATEKKAVTPAPPI 101
>sp|Q9PWL6|HXA9A_BRARE Homeobox protein Hox-A9a (Hoxx9)
          Length = 250

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 171 PANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEKTEIESSK 332
           P   P  V+H  +K+D  + N  G    P  I Q +V     G   KTE ESS+
Sbjct: 103 PQTEPPTVNHNHAKSDTNETNDDGTEYSPHTILQPEVF-TNGGCSTKTEAESSR 155
>sp|Q7VIU8|RUVB_HELHP Holliday junction DNA helicase ruvB
          Length = 336

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 153 AARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPK 260
           AA S   A I   +   L  N YL+R A+G VA PK
Sbjct: 285 AAMSEDEATIEDVIEPYLLANGYLERTAKGRVASPK 320
>sp|Q9D684|RIN2_MOUSE Ras and Rab interactor 2 (Ras interaction/interference protein 2)
          Length = 903

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 156 ARSVPPANIPGGVHHKLSKNDYLQRNARGEVAPPKIIYQSDVIKIESGLKEKTEIESSKN 335
           +R+ P  ++P  V+H    N  L       + PP++  Q+  ++ ES  K  T    S++
Sbjct: 326 SRTEPQTSMPETVNHSKHGNVALLGTKPTPIPPPRLKKQASFLEAESSAKTLTARRPSRS 385

Query: 336 LFPLP 350
             P P
Sbjct: 386 SEPEP 390
>sp|P24095|LOXX_SOYBN Seed lipoxygenase
          Length = 864

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 85  INGVRRSLLIRADAMIKNNYLPYKIYID 2
           ING+ R  LI AD +I+ ++LP K  I+
Sbjct: 564 INGLARQSLINADGIIEKSFLPGKYSIE 591
>sp|P79114|MYO10_BOVIN Myosin-10 (Myosin X)
          Length = 2052

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 72  LTPLMRKIRDIFNQRVYNNGLRYEGMI 152
           + P M+K+ D F+Q V  N LRY GM+
Sbjct: 637 IKPNMQKMPDQFDQAVVVNQLRYSGML 663
>sp|P27662|VGLG_VHSV0 Spike glycoprotein precursor
          Length = 507

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 110 VENVSNLSH*WSKTIFTHPCRCHD 39
           VEN+S     W   ++THP  C D
Sbjct: 28  VENISTYHADWDTPLYTHPSNCRD 51
>sp|Q9HD67|MYO10_HUMAN Myosin-10 (Myosin X)
          Length = 2058

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 72  LTPLMRKIRDIFNQRVYNNGLRYEGMI 152
           + P M+K+ D F+Q V  N LRY GM+
Sbjct: 637 IKPNMQKMPDQFDQAVVLNQLRYSGML 663
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,971,527
Number of Sequences: 369166
Number of extensions: 899365
Number of successful extensions: 2150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)