Planaria EST Database


DrC_01538

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01538
         (662 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49466|RPOB_ODOSI  DNA-directed RNA polymerase beta chain...    29   9.6  
sp|Q8KCG4|PROB_CHLTE  Glutamate 5-kinase (Gamma-glutamyl kin...    29   9.6  
>sp|P49466|RPOB_ODOSI DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA
           polymerase beta subunit) (RNA polymerase beta subunit)
          Length = 1379

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = -3

Query: 285 YEVVSYNVFEKISYKLSNQTKQLALQVFHQWI*ILPESFHFFSK 154
           Y + S+ +++KIS   ++  K   +++F QW+ +  + F+F +K
Sbjct: 198 YSLKSFKIYQKISKITNSPIKVQRIKLFLQWLKLNQKEFNFKNK 241
>sp|Q8KCG4|PROB_CHLTE Glutamate 5-kinase (Gamma-glutamyl kinase) (GK)
          Length = 361

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -2

Query: 295 YLGLRSCFL*RLRKNIL*TLQSNEAIGITGFSSMDLDS-SGILSFFFKKFAFNLLIS 128
           YL +R+CF   L++ I+  +  N+A+ IT     D D  SG+++   +  A N+++S
Sbjct: 118 YLNMRTCFEALLQQKIVPIVNENDAVAITELMFTDNDELSGLIASMLQVDA-NIILS 173
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,877,129
Number of Sequences: 369166
Number of extensions: 954470
Number of successful extensions: 2258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2257
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)