Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01538
(662 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49466|RPOB_ODOSI DNA-directed RNA polymerase beta chain... 29 9.6
sp|Q8KCG4|PROB_CHLTE Glutamate 5-kinase (Gamma-glutamyl kin... 29 9.6
>sp|P49466|RPOB_ODOSI DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA
polymerase beta subunit) (RNA polymerase beta subunit)
Length = 1379
Score = 29.3 bits (64), Expect = 9.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -3
Query: 285 YEVVSYNVFEKISYKLSNQTKQLALQVFHQWI*ILPESFHFFSK 154
Y + S+ +++KIS ++ K +++F QW+ + + F+F +K
Sbjct: 198 YSLKSFKIYQKISKITNSPIKVQRIKLFLQWLKLNQKEFNFKNK 241
>sp|Q8KCG4|PROB_CHLTE Glutamate 5-kinase (Gamma-glutamyl kinase) (GK)
Length = 361
Score = 29.3 bits (64), Expect = 9.6
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -2
Query: 295 YLGLRSCFL*RLRKNIL*TLQSNEAIGITGFSSMDLDS-SGILSFFFKKFAFNLLIS 128
YL +R+CF L++ I+ + N+A+ IT D D SG+++ + A N+++S
Sbjct: 118 YLNMRTCFEALLQQKIVPIVNENDAVAITELMFTDNDELSGLIASMLQVDA-NIILS 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,877,129
Number of Sequences: 369166
Number of extensions: 954470
Number of successful extensions: 2258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2257
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)