Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01530
(262 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7S1I0|ATG26_NEUCR Sterol 3-beta-glucosyltransferase (Au... 31 1.00
sp|P59242|CING_MOUSE Cingulin 29 2.9
sp|P25302|SWI4_YEAST Regulatory protein SWI4 (Cell-cycle bo... 28 8.4
>sp|Q7S1I0|ATG26_NEUCR Sterol 3-beta-glucosyltransferase (Autophagy-related protein 26)
Length = 1553
Score = 30.8 bits (68), Expect = 1.00
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 46 LSSKHTSRGTCQENATSSSKNKTEKQE 126
LSS H S+ T Q NAT+ + NK E++E
Sbjct: 221 LSSSHKSKKTKQHNATAMADNKIEEEE 247
>sp|P59242|CING_MOUSE Cingulin
Length = 1191
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 37 KEALSSKHTSRGTCQENATSSSKNKTEKQ 123
+E S+ H +RGT +N SSKN ++KQ
Sbjct: 221 REHQSANHWTRGTKYDNHVDSSKNPSQKQ 249
>sp|P25302|SWI4_YEAST Regulatory protein SWI4 (Cell-cycle box factor, chain SWI4) (ART1
protein)
Length = 1093
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 234 LQNRIKNNPEQATKVSQQMKTDQNSFDIVY 145
L N I NN Q+T + QQ +NSF+ Y
Sbjct: 247 LINNISNNSNQSTIIQQQKSIHENSFNNNY 276
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,074,538
Number of Sequences: 369166
Number of extensions: 273990
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)