Planaria EST Database


DrC_01522

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01522
         (806 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89AW8|RNFC_BUCBP  Electron transport complex protein rnfC      33   1.2  
sp|O84899|UVRC_MYCAA  UvrABC system protein C (UvrC protein)...    33   1.2  
sp|Q8D372|SYR_WIGBR  Arginyl-tRNA synthetase (Arginine--tRNA...    32   1.6  
sp|Q59017|YG23_METJA  Hypothetical protein MJ1623                  31   3.5  
sp|P52710|CBPY_PICPA  Carboxypeptidase Y precursor (Carboxyp...    31   4.6  
sp|Q97C11|Y294_THEVO  Putative HTH-type transcriptional regu...    30   5.9  
sp|P51232|CEMA_PORPU  Chloroplast envelope membrane protein        30   5.9  
sp|O59735|YHXF_SCHPO  Hypothetical protein C3E17.15c in chro...    30   7.8  
sp|P34848|NU2M_ANOGA  NADH-ubiquinone oxidoreductase chain 2...    30   7.8  
sp|Q9AIG8|RS7_CARRU  30S ribosomal protein S7                      30   7.8  
>sp|Q89AW8|RNFC_BUCBP Electron transport complex protein rnfC
          Length = 505

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
 Frame = +2

Query: 140 KTNKTFIWIGNIGPYIGYQNKSYNPIKNQLKGCLDYFYF-NNILLTFERKGKKMLSICKS 316
           K N+  + +   GP  G   +++N    +   C+ +    NN L  FE K     + C  
Sbjct: 339 KLNEKTLKVNIGGPITGLLIRNFNFSVLKTNNCIMFVSIQNNELNNFEEKNCIRCAACSY 398

Query: 317 RYEEKIFDISKYNFENMTKYKVNEIIVNNDCLFWIINETICRKDIPI 457
                +     Y +   + ++  +I    DC+   I E +C  DIP+
Sbjct: 399 SCPMNLLPEQLYWYSKHSNHEKTQIYNIQDCIECGICEQVCPSDIPL 445
>sp|O84899|UVRC_MYCAA UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
          Length = 571

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +2

Query: 137 IKTNKTFIWIGN---IGPYIGYQNKSY-NPIKNQLKGCLDYFYFNNILLTFERKGKKMLS 304
           IK N +  W+     I   + ++N +Y N + N++    +   F   L  F R G   L+
Sbjct: 160 IKNNDSSFWVNQFAKIKEILSFKNNNYLNELTNKMHTAANNMQFE--LALFLRDG---LT 214

Query: 305 ICKSRYEEKIFDISKYNFENMTKYKVNEIIVNNDCLFW 418
             K   E +I ++S+Y   ++  YK +E ++    LF+
Sbjct: 215 YLKKLKESQIIELSQYKNIDVFAYKTDEKLIYATVLFY 252
>sp|Q8D372|SYR_WIGBR Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
          Length = 576

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 27/121 (22%)
 Frame = +2

Query: 134 NIKTNKTFIWI------GNIGPYIGYQNKSYNPI--KNQLKGCLDYFYFNNILLTFERKG 289
           N +T+  F W       GN  PYI Y       +  KN+LK        NN+    +++ 
Sbjct: 438 NRETDYIFNWDNILSFNGNTAPYIQYAYTRVISLIKKNKLKNK------NNVKFLLKKEE 491

Query: 290 KKMLSICKSRYEEKIFDISKYN-------------------FENMTKYKVNEIIVNNDCL 412
           +  LSIC  ++EE I D+SK                     +EN +  K  E  V N  L
Sbjct: 492 EIDLSICLLQFEEIINDVSKLGTPHILCNYLYDLSKTFSVFYENCSIIKTKEESVKNSRL 551

Query: 413 F 415
           F
Sbjct: 552 F 552
>sp|Q59017|YG23_METJA Hypothetical protein MJ1623
          Length = 512

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
 Frame = +2

Query: 200 KSYNPIKNQLKGCLDYFYFNNILLTFERKGKKMLSICKSRYEEKIFDISKY--NFENMTK 373
           K    I ++LK   D+   N ++   E  G+++L    S + E   DI KY  NF    K
Sbjct: 310 KQVKSIVDELKKAEDFE--NPLIFINECYGREVLK--NSMFREFEEDILKYFLNFYKAGK 365

Query: 374 YKVNEIIVNNDCLFWI-INETICRKDIPIYN 463
            KV E ++ ++C+ W+   ETI +  I  +N
Sbjct: 366 -KVEEYVIEDNCIGWLSYGETIAKDLIRFHN 395
>sp|P52710|CBPY_PICPA Carboxypeptidase Y precursor (Carboxypeptidase YSCY)
          Length = 523

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 251 KNNPNSLSIDFLLDYKIYFDIQYKDQYF 168
           +NNP  L +DF   Y  Y D++  D++F
Sbjct: 109 RNNPEVLKVDFTKQYSGYLDVEADDKHF 136
>sp|Q97C11|Y294_THEVO Putative HTH-type transcriptional regulatory protein TV0294
          Length = 312

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 21/141 (14%)
 Frame = +2

Query: 47  HVICNGNVRKFENKHKRDQPGLYPIPKDVNIKTNKTFIW---------IGNIGPYIGYQN 199
           H +   +V  FE+    ++P +Y  P    ++ N   +          IGNI  Y+G   
Sbjct: 96  HGVPISSVNTFESYLNGERPYIYSGPGGFYVRINGELLRERRNELNLSIGNISSYLGVSR 155

Query: 200 KSYNPIKNQLKGCLDYFY-FNNILLT--FERKGKKMLSICKSRYEEKIFD---------I 343
           +S +  +N     +D F    NIL     +      ++  +  +EEKI D         +
Sbjct: 156 RSVSLYENGSAATIDIFIRLRNILKADIVDHIDLFRINSTEINFEEKISDEYIARIIWLL 215

Query: 344 SKYNFENMTKYKVNEIIVNND 406
            KY  +    +KV   IV  D
Sbjct: 216 QKYGLDTRPIFKVPFDIVAKD 236
>sp|P51232|CEMA_PORPU Chloroplast envelope membrane protein
          Length = 278

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +2

Query: 173 IGPYIGYQNKSYNPIKNQLKGCLDYFYFNNILLTFERKGKKMLSICKSRYEEKIFDIS 346
           +G Y  Y N+S N +KN L   L    F  +++T    G++ +SI KS   E I+ +S
Sbjct: 144 LGEY--YANESANAVKNILSDILSIAVFILLMIT----GQRQISIVKSFLNEIIYGLS 195
>sp|O59735|YHXF_SCHPO Hypothetical protein C3E17.15c in chromosome II
          Length = 384

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
 Frame = -2

Query: 427 INYPE*TIIIYNYFVYFVFCHVFKIIF*NIKYFLFI-STFTNGQHF----FAFPFKCQQN 263
           +NY   T+I+Y  FV FVF  ++   + N K    +  T      F     A  +KC  +
Sbjct: 268 LNYVN-TVIVYPIFVIFVFVWIYMRHYLNFKIMWAVWGTMRTINSFDLDWAAEQYKCWIS 326

Query: 262 IVKIKIIQTAFQLI-FYWIIRFILI 191
                I+ TA QL+  YW+I  + I
Sbjct: 327 RDVTLILLTALQLVNIYWLILILRI 351
>sp|P34848|NU2M_ANOGA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 341

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = -3

Query: 465 LLYIGISFLQIVSLIIQNKQSLFTIISFTLYFVMFSKLYFEISNIFSSYRLLQMDNIF-L 289
           + +  I+ L  + L + N + L+       YF+M+S L F I  +F++++L   + IF L
Sbjct: 175 MAFSSINHLGWMLLAMMNNEMLWMT-----YFLMYSLLSFSIVLMFNNFKLFYFNQIFNL 229

Query: 288 PFLSNVNKILL 256
             ++ + K+L+
Sbjct: 230 SMMNPIIKLLI 240
>sp|Q9AIG8|RS7_CARRU 30S ribosomal protein S7
          Length = 156

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 77  FENKHKRDQPGLYPIPKDVNIKTNKTFI--WIGNIGPYIGYQNKSYNPIKNQLKGCLDYF 250
           FE K K+    +Y IP  +N+K +  F   WI         + ++ N  KN+L G L   
Sbjct: 73  FEIKKKKIGGSVYKIPIKINLKRSLMFSMKWIVK-----NSKLRNENGYKNKLVGELIDS 127

Query: 251 YFNNILLTFER 283
           Y+NN L T ++
Sbjct: 128 YYNNSLSTKQK 138
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,323,048
Number of Sequences: 369166
Number of extensions: 1651030
Number of successful extensions: 4511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4510
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)