Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01522
(806 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q89AW8|RNFC_BUCBP Electron transport complex protein rnfC 33 1.2
sp|O84899|UVRC_MYCAA UvrABC system protein C (UvrC protein)... 33 1.2
sp|Q8D372|SYR_WIGBR Arginyl-tRNA synthetase (Arginine--tRNA... 32 1.6
sp|Q59017|YG23_METJA Hypothetical protein MJ1623 31 3.5
sp|P52710|CBPY_PICPA Carboxypeptidase Y precursor (Carboxyp... 31 4.6
sp|Q97C11|Y294_THEVO Putative HTH-type transcriptional regu... 30 5.9
sp|P51232|CEMA_PORPU Chloroplast envelope membrane protein 30 5.9
sp|O59735|YHXF_SCHPO Hypothetical protein C3E17.15c in chro... 30 7.8
sp|P34848|NU2M_ANOGA NADH-ubiquinone oxidoreductase chain 2... 30 7.8
sp|Q9AIG8|RS7_CARRU 30S ribosomal protein S7 30 7.8
>sp|Q89AW8|RNFC_BUCBP Electron transport complex protein rnfC
Length = 505
Score = 32.7 bits (73), Expect = 1.2
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Frame = +2
Query: 140 KTNKTFIWIGNIGPYIGYQNKSYNPIKNQLKGCLDYFYF-NNILLTFERKGKKMLSICKS 316
K N+ + + GP G +++N + C+ + NN L FE K + C
Sbjct: 339 KLNEKTLKVNIGGPITGLLIRNFNFSVLKTNNCIMFVSIQNNELNNFEEKNCIRCAACSY 398
Query: 317 RYEEKIFDISKYNFENMTKYKVNEIIVNNDCLFWIINETICRKDIPI 457
+ Y + + ++ +I DC+ I E +C DIP+
Sbjct: 399 SCPMNLLPEQLYWYSKHSNHEKTQIYNIQDCIECGICEQVCPSDIPL 445
>sp|O84899|UVRC_MYCAA UvrABC system protein C (UvrC protein) (Excinuclease ABC subunit C)
Length = 571
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +2
Query: 137 IKTNKTFIWIGN---IGPYIGYQNKSY-NPIKNQLKGCLDYFYFNNILLTFERKGKKMLS 304
IK N + W+ I + ++N +Y N + N++ + F L F R G L+
Sbjct: 160 IKNNDSSFWVNQFAKIKEILSFKNNNYLNELTNKMHTAANNMQFE--LALFLRDG---LT 214
Query: 305 ICKSRYEEKIFDISKYNFENMTKYKVNEIIVNNDCLFW 418
K E +I ++S+Y ++ YK +E ++ LF+
Sbjct: 215 YLKKLKESQIIELSQYKNIDVFAYKTDEKLIYATVLFY 252
>sp|Q8D372|SYR_WIGBR Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
Length = 576
Score = 32.3 bits (72), Expect = 1.6
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 27/121 (22%)
Frame = +2
Query: 134 NIKTNKTFIWI------GNIGPYIGYQNKSYNPI--KNQLKGCLDYFYFNNILLTFERKG 289
N +T+ F W GN PYI Y + KN+LK NN+ +++
Sbjct: 438 NRETDYIFNWDNILSFNGNTAPYIQYAYTRVISLIKKNKLKNK------NNVKFLLKKEE 491
Query: 290 KKMLSICKSRYEEKIFDISKYN-------------------FENMTKYKVNEIIVNNDCL 412
+ LSIC ++EE I D+SK +EN + K E V N L
Sbjct: 492 EIDLSICLLQFEEIINDVSKLGTPHILCNYLYDLSKTFSVFYENCSIIKTKEESVKNSRL 551
Query: 413 F 415
F
Sbjct: 552 F 552
>sp|Q59017|YG23_METJA Hypothetical protein MJ1623
Length = 512
Score = 31.2 bits (69), Expect = 3.5
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +2
Query: 200 KSYNPIKNQLKGCLDYFYFNNILLTFERKGKKMLSICKSRYEEKIFDISKY--NFENMTK 373
K I ++LK D+ N ++ E G+++L S + E DI KY NF K
Sbjct: 310 KQVKSIVDELKKAEDFE--NPLIFINECYGREVLK--NSMFREFEEDILKYFLNFYKAGK 365
Query: 374 YKVNEIIVNNDCLFWI-INETICRKDIPIYN 463
KV E ++ ++C+ W+ ETI + I +N
Sbjct: 366 -KVEEYVIEDNCIGWLSYGETIAKDLIRFHN 395
>sp|P52710|CBPY_PICPA Carboxypeptidase Y precursor (Carboxypeptidase YSCY)
Length = 523
Score = 30.8 bits (68), Expect = 4.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 251 KNNPNSLSIDFLLDYKIYFDIQYKDQYF 168
+NNP L +DF Y Y D++ D++F
Sbjct: 109 RNNPEVLKVDFTKQYSGYLDVEADDKHF 136
>sp|Q97C11|Y294_THEVO Putative HTH-type transcriptional regulatory protein TV0294
Length = 312
Score = 30.4 bits (67), Expect = 5.9
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 21/141 (14%)
Frame = +2
Query: 47 HVICNGNVRKFENKHKRDQPGLYPIPKDVNIKTNKTFIW---------IGNIGPYIGYQN 199
H + +V FE+ ++P +Y P ++ N + IGNI Y+G
Sbjct: 96 HGVPISSVNTFESYLNGERPYIYSGPGGFYVRINGELLRERRNELNLSIGNISSYLGVSR 155
Query: 200 KSYNPIKNQLKGCLDYFY-FNNILLT--FERKGKKMLSICKSRYEEKIFD---------I 343
+S + +N +D F NIL + ++ + +EEKI D +
Sbjct: 156 RSVSLYENGSAATIDIFIRLRNILKADIVDHIDLFRINSTEINFEEKISDEYIARIIWLL 215
Query: 344 SKYNFENMTKYKVNEIIVNND 406
KY + +KV IV D
Sbjct: 216 QKYGLDTRPIFKVPFDIVAKD 236
>sp|P51232|CEMA_PORPU Chloroplast envelope membrane protein
Length = 278
Score = 30.4 bits (67), Expect = 5.9
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +2
Query: 173 IGPYIGYQNKSYNPIKNQLKGCLDYFYFNNILLTFERKGKKMLSICKSRYEEKIFDIS 346
+G Y Y N+S N +KN L L F +++T G++ +SI KS E I+ +S
Sbjct: 144 LGEY--YANESANAVKNILSDILSIAVFILLMIT----GQRQISIVKSFLNEIIYGLS 195
>sp|O59735|YHXF_SCHPO Hypothetical protein C3E17.15c in chromosome II
Length = 384
Score = 30.0 bits (66), Expect = 7.8
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = -2
Query: 427 INYPE*TIIIYNYFVYFVFCHVFKIIF*NIKYFLFI-STFTNGQHF----FAFPFKCQQN 263
+NY T+I+Y FV FVF ++ + N K + T F A +KC +
Sbjct: 268 LNYVN-TVIVYPIFVIFVFVWIYMRHYLNFKIMWAVWGTMRTINSFDLDWAAEQYKCWIS 326
Query: 262 IVKIKIIQTAFQLI-FYWIIRFILI 191
I+ TA QL+ YW+I + I
Sbjct: 327 RDVTLILLTALQLVNIYWLILILRI 351
>sp|P34848|NU2M_ANOGA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 341
Score = 30.0 bits (66), Expect = 7.8
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = -3
Query: 465 LLYIGISFLQIVSLIIQNKQSLFTIISFTLYFVMFSKLYFEISNIFSSYRLLQMDNIF-L 289
+ + I+ L + L + N + L+ YF+M+S L F I +F++++L + IF L
Sbjct: 175 MAFSSINHLGWMLLAMMNNEMLWMT-----YFLMYSLLSFSIVLMFNNFKLFYFNQIFNL 229
Query: 288 PFLSNVNKILL 256
++ + K+L+
Sbjct: 230 SMMNPIIKLLI 240
>sp|Q9AIG8|RS7_CARRU 30S ribosomal protein S7
Length = 156
Score = 30.0 bits (66), Expect = 7.8
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 77 FENKHKRDQPGLYPIPKDVNIKTNKTFI--WIGNIGPYIGYQNKSYNPIKNQLKGCLDYF 250
FE K K+ +Y IP +N+K + F WI + ++ N KN+L G L
Sbjct: 73 FEIKKKKIGGSVYKIPIKINLKRSLMFSMKWIVK-----NSKLRNENGYKNKLVGELIDS 127
Query: 251 YFNNILLTFER 283
Y+NN L T ++
Sbjct: 128 YYNNSLSTKQK 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,323,048
Number of Sequences: 369166
Number of extensions: 1651030
Number of successful extensions: 4511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4510
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)