Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01515
(904 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q59011|IMDH_METJA Inosine-5'-monophosphate dehydrogenase... 36 0.17
sp|P27220|VE1_HPV35 Replication protein E1 32 2.4
sp|Q9HLE7|SYR_THEAC Arginyl-tRNA synthetase (Arginine--tRNA... 32 2.4
sp|Q72TM7|ATKA_LEPIC Potassium-transporting ATPase A chain ... 32 2.4
sp|Q8F1M1|ATKA_LEPIN Potassium-transporting ATPase A chain ... 32 2.4
sp|P17382|VE1_HPV31 Replication protein E1 32 3.2
sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA 31 4.1
sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase beta'' ch... 31 4.1
sp|P03114|VE1_HPV16 Replication protein E1 31 5.4
>sp|Q59011|IMDH_METJA Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH)
(IMPD)
Length = 496
Score = 35.8 bits (81), Expect = 0.17
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +3
Query: 168 HTCALIRADEHEVQSTESDQQFIIKDVITIS-DILHLAMINMHRNSSITALQILQYRNQS 344
H I H+VQ+ + + +IKDVIT+S D IN+ SI+ L ++ ++
Sbjct: 74 HRNMSIEEQVHQVQAVKKADEVVIKDVITVSPDDTVGEAINVMETYSISGLPVVDNEDKL 133
Query: 345 HTPMTYRDPVVSCSIDDSVQHLIDLVVKE 431
+T+RD +I+D + + D++ K+
Sbjct: 134 VGIITHRDVK---AIEDKTKKVKDVMTKD 159
>sp|P27220|VE1_HPV35 Replication protein E1
Length = 637
Score = 32.0 bits (71), Expect = 2.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 33 EILQPLSNEKSTCEDLCISAISKTQYVVYSHSTII 137
E+++P ++KSTC D C++A V S T+I
Sbjct: 207 ELIRPFKSDKSTCTDWCVAAFGIAPSVAESLKTLI 241
>sp|Q9HLE7|SYR_THEAC Arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS)
Length = 546
Score = 32.0 bits (71), Expect = 2.4
Identities = 19/103 (18%), Positives = 50/103 (48%)
Frame = +3
Query: 390 DDSVQHLIDLVVKEKASFALIRANQSISSPTTFLLTPIDILNYICKQSSSPNYLPNHSSI 569
++ + + +++ +++IR +S+P + LN+ + +S+P + +H+
Sbjct: 388 EEERKKIAEVIASSAVRYSIIR----VSAPKPITFRWEEALNF--ESNSAPFIMYSHARA 441
Query: 570 IADLNKVKKPVLKYSLERLRQNSDLVGCSRNSPKILDDTLEEV 698
+ L+K +P Y ++ ++ +DLV P L D +++
Sbjct: 442 ASILDKAPEPEQSYGMDMPKEEADLVKAMYVYPYYLKDAAQDL 484
>sp|Q72TM7|ATKA_LEPIC Potassium-transporting ATPase A chain (Potassium-translocating
ATPase A chain) (ATP phosphohydrolase
[potassium-transporting] A chain) (Potassium binding and
translocating subunit A)
Length = 557
Score = 32.0 bits (71), Expect = 2.4
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 21/78 (26%)
Frame = +1
Query: 676 LMTLLKKFSILMFHEVFEMILFDKK--KNSKFEIILYKV-------------------MF 792
+ L+ F++L+F +F + L+ K S FE LYK+ +F
Sbjct: 6 IQLLIFLFALLIFSPLFGLGLYKVYLYKTSGFEKFLYKICGIDPNRNMDWKEYALSLLVF 65
Query: 793 SFFAIVEVLFLFVFFQNY 846
+FF + +LFL +FFQNY
Sbjct: 66 NFFGFL-LLFLILFFQNY 82
>sp|Q8F1M1|ATKA_LEPIN Potassium-transporting ATPase A chain (Potassium-translocating
ATPase A chain) (ATP phosphohydrolase
[potassium-transporting] A chain) (Potassium binding and
translocating subunit A)
Length = 557
Score = 32.0 bits (71), Expect = 2.4
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 21/78 (26%)
Frame = +1
Query: 676 LMTLLKKFSILMFHEVFEMILFDKK--KNSKFEIILYKV-------------------MF 792
+ L+ F++L+F +F + L+ K S FE LYK+ +F
Sbjct: 6 IQLLIFLFALLIFSPLFGLGLYKVYLYKTSGFEKFLYKICGIDPNRNMDWKEYALSLLVF 65
Query: 793 SFFAIVEVLFLFVFFQNY 846
+FF + +LFL +FFQNY
Sbjct: 66 NFFGFL-LLFLILFFQNY 82
>sp|P17382|VE1_HPV31 Replication protein E1
Length = 629
Score = 31.6 bits (70), Expect = 3.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 33 EILQPLSNEKSTCEDLCISAISKTQYVVYSHSTII 137
E+++P + KSTC D C++A T V T++
Sbjct: 201 ELIRPFQSNKSTCTDWCVAAFGVTGTVAEGFKTLL 235
>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA
Length = 215
Score = 31.2 bits (69), Expect = 4.1
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Frame = +3
Query: 315 LQILQYRNQSHTPMTY---RDPVVSCSIDDSVQHLIDLVVKEKASFALIRANQSISSPTT 485
++I + N S+ +TY R+ ++ + + SV L D V FA SP+T
Sbjct: 6 IEIKRIENSSNRQVTYSKRRNGIMKKAKEISV--LCDAHVSV-IIFASSGKMHEFCSPST 62
Query: 486 FLLTPIDILNYICKQSSSPNYLPNHSSIIADLNKVKKPVLKYSLE-RLRQNSDLVGCSRN 662
L +D+L++ K S + P H + ++N+VKK +E R + D+ +
Sbjct: 63 TL---VDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYK 119
Query: 663 SPKILDDTLE 692
+L+D LE
Sbjct: 120 ELMVLEDALE 129
>sp|Q8MA10|RPOC2_CHAGL DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1373
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 209 LNFMFIGSNQCTRMITARHCSKNIYYC*MTINH 111
LNF F +M++ R+ KN+Y+C T+N+
Sbjct: 853 LNFCFSNQTNFEKMLSKRNFHKNLYFCFKTLNN 885
>sp|P03114|VE1_HPV16 Replication protein E1
Length = 649
Score = 30.8 bits (68), Expect = 5.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 33 EILQPLSNEKSTCEDLCISAISKTQYVVYSHSTII 137
E+++P + KSTC D CI+A T + S T++
Sbjct: 221 ELVRPFKSNKSTCCDWCIAAFGLTPSIADSIKTLL 255
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,616,815
Number of Sequences: 369166
Number of extensions: 1345315
Number of successful extensions: 3518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3518
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)