Planaria EST Database


DrC_01503

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01503
         (467 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08623|HDD1A_HUMAN  Haloacid dehalogenase-like hydrolase ...    98   1e-20
sp|Q94529|GS1_DROME  GS1-like protein                              88   1e-17
sp|O14165|YDX1_SCHPO  Hypothetical protein C4C5.01 in chromo...    49   6e-06
sp|O33513|CBBY_RHOCA  Protein cbbY                                 46   5e-05
sp|P54607|YHCW_BACSU  Hypothetical protein yhcW                    45   8e-05
sp|P77475|YQAB_ECOLI  Phosphatase yqaB                             42   0.001
sp|P95649|CBBY_RHOSH  Protein cbbY                                 37   0.017
sp|Q7ADF8|YNIC_ECO57  Phosphatase yniC                             36   0.038
sp|P77247|YNIC_ECOLI  Phosphatase yniC                             36   0.038
sp|O06995|PGMB_BACSU  Putative beta-phosphoglucomutase (Beta...    35   0.11 
>sp|Q08623|HDD1A_HUMAN Haloacid dehalogenase-like hydrolase domain containing protein 1A
           (GS1 protein)
          Length = 214

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 53/132 (40%), Positives = 78/132 (59%)
 Frame = +2

Query: 23  QQIIDYFWKNNIPMAIASGSSDISYELKTKPHSELFSKIHHVVLSGSDEIVKKSKPAPDI 202
           +++I +  K+ IP A+A+ S   S+++KT  H E FS   H+VL G D  V+  KP PDI
Sbjct: 82  EKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVL-GDDPEVQHGKPDPDI 140

Query: 203 FIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEETDTTIFQNHPDVVI 382
           F+  A RF  +PP +    LVFEDA NG++ AL+A M+ V +PD      +       ++
Sbjct: 141 FLACAKRF--SPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDL--TTKATLV 196

Query: 383 LKSLEQFNPELY 418
           L SL+ F PEL+
Sbjct: 197 LNSLQDFQPELF 208
>sp|Q94529|GS1_DROME GS1-like protein
          Length = 231

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 51/132 (38%), Positives = 70/132 (53%)
 Frame = +2

Query: 23  QQIIDYFWKNNIPMAIASGSSDISYELKTKPHSELFSKIHHVVLSGSDEIVKKSKPAPDI 202
           ++++ +   N +P  +A+ S     ELKT  H ELFS  +H V   SD+ V   KPAPDI
Sbjct: 97  ERLLRHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNGKPAPDI 156

Query: 203 FIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEETDTTIFQNHPDVVI 382
           F+ AA RF    P  P + LVFED+ NG+  A SA M+ V +PD        +      +
Sbjct: 157 FLVAAGRF--GVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPRLSQE--KTSHATQV 212

Query: 383 LKSLEQFNPELY 418
           L SL  F PE +
Sbjct: 213 LASLADFKPEQF 224
>sp|O14165|YDX1_SCHPO Hypothetical protein C4C5.01 in chromosome I
          Length = 246

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
 Frame = +2

Query: 101 LKTKPHSELFSKIHHVVLSGSDEIVK--KSKPAPDIFIEAALRFINNP-------PISPR 253
           +KT     +F K    V++G +  +   + KP PDI+++  L  IN          ++P 
Sbjct: 120 IKTAHLKHIFEKFGKNVITGDNPSIAPGRGKPFPDIWLKV-LNLINESRKQRGLKALTPS 178

Query: 254 NVLVFEDAANGIKGALSANMRTVWIPDEETDTTIFQNHPDVV-----ILKSLEQFNPELY 418
             + FED+  G+K A +A M  +W+PD      +     ++V      L SL +F+   Y
Sbjct: 179 QCIAFEDSIPGVKSAKAAGMHVIWVPDAAIKNLVGDQLNEIVDSQCETLPSLSEFDINKY 238

Query: 419 I 421
           +
Sbjct: 239 L 239
>sp|O33513|CBBY_RHOCA Protein cbbY
          Length = 227

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
 Frame = +2

Query: 26  QIIDYFWKNNIPMAIASGSSDISYELK-----TKPHSELFSKIHHVVLSGSDEIVKKSKP 190
           ++ID    + + +AIA+ ++  + +       +KP  ++F      V++  DE+ +K KP
Sbjct: 100 ELIDRAKASGLRLAIATTTTRANVDALIAATFSKPAGDIFE-----VIAAGDEVAQK-KP 153

Query: 191 APDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEET 343
           APD+++ A L+ +  PP +    L FED+  G+  A +A +R V  P E T
Sbjct: 154 APDVYLRA-LQGLGLPPAA---CLAFEDSRAGLASARAAGLRVVLTPSEYT 200
>sp|P54607|YHCW_BACSU Hypothetical protein yhcW
          Length = 220

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 25/73 (34%), Positives = 44/73 (60%)
 Frame = +2

Query: 149 VLSGSDEIVKKSKPAPDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWI 328
           V+  +D+ V++ KP P++++ AA     N  +SP   L FED+ NG   A  A M+ V +
Sbjct: 130 VIQTADD-VEEVKPNPELYLLAA----KNLGVSPAECLAFEDSVNGSIAAKRAGMKCVIV 184

Query: 329 PDEETDTTIFQNH 367
           P++ T T +F+++
Sbjct: 185 PNKVTGTLMFEDY 197
>sp|P77475|YQAB_ECOLI Phosphatase yqaB
          Length = 188

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 33/93 (35%), Positives = 42/93 (45%)
 Frame = +2

Query: 44  WKNNIPMAIASGSSDISYELKTKPHSELFSKIHHVVLSGSDEIVKKSKPAPDIFIEAALR 223
           W    PMA+ +GS     E     H  L      VV +   + VK  KPAPD F+  A R
Sbjct: 99  WHGRRPMAVGTGSESAIAEALLA-HLGLRHYFDAVVAA---DHVKHHKPAPDTFLLCAQR 154

Query: 224 FINNPPISPRNVLVFEDAANGIKGALSANMRTV 322
                 + P   +VFEDA  GI+ A +A M  V
Sbjct: 155 M----GVQPTQCVVFEDADFGIQAARAAGMDAV 183
>sp|P95649|CBBY_RHOSH Protein cbbY
          Length = 230

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 22/66 (33%), Positives = 38/66 (57%)
 Frame = +2

Query: 134 KIHHVVLSGSDEIVKKSKPAPDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANM 313
           +I  V+ +G  ++V + KP+PDI+   ALR ++ PP      +  ED+ NG++ A  A +
Sbjct: 136 EIFDVIAAG--DMVAEKKPSPDIY-RLALRELDVPP---ERAVALEDSLNGLRAAKGAGL 189

Query: 314 RTVWIP 331
           R +  P
Sbjct: 190 RCIVSP 195
>sp|Q7ADF8|YNIC_ECO57 Phosphatase yniC
          Length = 222

 Score = 36.2 bits (82), Expect = 0.038
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +2

Query: 161 SDEIVKKSKPAPDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEE 340
           S E +  SKP P ++++ A +      + P   +  ED+ NG+  + +A MR++ +P  E
Sbjct: 140 SAEKLPYSKPHPQVYLDCAAKL----GVDPLTCVALEDSVNGMIASKAARMRSIVVPAPE 195

Query: 341 TDTTIFQNHPDVVI 382
                 QN P  V+
Sbjct: 196 A-----QNDPRFVL 204
>sp|P77247|YNIC_ECOLI Phosphatase yniC
          Length = 222

 Score = 36.2 bits (82), Expect = 0.038
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +2

Query: 161 SDEIVKKSKPAPDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEE 340
           S E +  SKP P ++++ A +      + P   +  ED+ NG+  + +A MR++ +P  E
Sbjct: 140 SAEKLPYSKPHPQVYLDCAAKL----GVDPLTCVALEDSVNGMIASKAARMRSIVVPAPE 195

Query: 341 TDTTIFQNHPDVVI 382
                 QN P  V+
Sbjct: 196 A-----QNDPRFVL 204
>sp|O06995|PGMB_BACSU Putative beta-phosphoglucomutase (Beta-PGM)
          Length = 226

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 28/92 (30%), Positives = 39/92 (42%)
 Frame = +2

Query: 53  NIPMAIASGSSDISYELKTKPHSELFSKIHHVVLSGSDEIVKKSKPAPDIFIEAALRFIN 232
           NI + +AS S +    L+      +    H +V       + K KP PDIF+ AA     
Sbjct: 107 NIKIGLASSSRNAPKILR---RLAIIDDFHAIV---DPTTLAKGKPDPDIFLTAAAML-- 158

Query: 233 NPPISPRNVLVFEDAANGIKGALSANMRTVWI 328
              +SP +    EDA  GI    SA M  V +
Sbjct: 159 --DVSPADCAAIEDAEAGISAIKSAGMFAVGV 188
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,365,319
Number of Sequences: 369166
Number of extensions: 984430
Number of successful extensions: 2536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2528
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)