Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01503
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08623|HDD1A_HUMAN Haloacid dehalogenase-like hydrolase ... 98 1e-20
sp|Q94529|GS1_DROME GS1-like protein 88 1e-17
sp|O14165|YDX1_SCHPO Hypothetical protein C4C5.01 in chromo... 49 6e-06
sp|O33513|CBBY_RHOCA Protein cbbY 46 5e-05
sp|P54607|YHCW_BACSU Hypothetical protein yhcW 45 8e-05
sp|P77475|YQAB_ECOLI Phosphatase yqaB 42 0.001
sp|P95649|CBBY_RHOSH Protein cbbY 37 0.017
sp|Q7ADF8|YNIC_ECO57 Phosphatase yniC 36 0.038
sp|P77247|YNIC_ECOLI Phosphatase yniC 36 0.038
sp|O06995|PGMB_BACSU Putative beta-phosphoglucomutase (Beta... 35 0.11
>sp|Q08623|HDD1A_HUMAN Haloacid dehalogenase-like hydrolase domain containing protein 1A
(GS1 protein)
Length = 214
Score = 97.8 bits (242), Expect = 1e-20
Identities = 53/132 (40%), Positives = 78/132 (59%)
Frame = +2
Query: 23 QQIIDYFWKNNIPMAIASGSSDISYELKTKPHSELFSKIHHVVLSGSDEIVKKSKPAPDI 202
+++I + K+ IP A+A+ S S+++KT H E FS H+VL G D V+ KP PDI
Sbjct: 82 EKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVL-GDDPEVQHGKPDPDI 140
Query: 203 FIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEETDTTIFQNHPDVVI 382
F+ A RF +PP + LVFEDA NG++ AL+A M+ V +PD + ++
Sbjct: 141 FLACAKRF--SPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDL--TTKATLV 196
Query: 383 LKSLEQFNPELY 418
L SL+ F PEL+
Sbjct: 197 LNSLQDFQPELF 208
>sp|Q94529|GS1_DROME GS1-like protein
Length = 231
Score = 87.8 bits (216), Expect = 1e-17
Identities = 51/132 (38%), Positives = 70/132 (53%)
Frame = +2
Query: 23 QQIIDYFWKNNIPMAIASGSSDISYELKTKPHSELFSKIHHVVLSGSDEIVKKSKPAPDI 202
++++ + N +P +A+ S ELKT H ELFS +H V SD+ V KPAPDI
Sbjct: 97 ERLLRHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNGKPAPDI 156
Query: 203 FIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEETDTTIFQNHPDVVI 382
F+ AA RF P P + LVFED+ NG+ A SA M+ V +PD + +
Sbjct: 157 FLVAAGRF--GVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPRLSQE--KTSHATQV 212
Query: 383 LKSLEQFNPELY 418
L SL F PE +
Sbjct: 213 LASLADFKPEQF 224
>sp|O14165|YDX1_SCHPO Hypothetical protein C4C5.01 in chromosome I
Length = 246
Score = 48.9 bits (115), Expect = 6e-06
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Frame = +2
Query: 101 LKTKPHSELFSKIHHVVLSGSDEIVK--KSKPAPDIFIEAALRFINNP-------PISPR 253
+KT +F K V++G + + + KP PDI+++ L IN ++P
Sbjct: 120 IKTAHLKHIFEKFGKNVITGDNPSIAPGRGKPFPDIWLKV-LNLINESRKQRGLKALTPS 178
Query: 254 NVLVFEDAANGIKGALSANMRTVWIPDEETDTTIFQNHPDVV-----ILKSLEQFNPELY 418
+ FED+ G+K A +A M +W+PD + ++V L SL +F+ Y
Sbjct: 179 QCIAFEDSIPGVKSAKAAGMHVIWVPDAAIKNLVGDQLNEIVDSQCETLPSLSEFDINKY 238
Query: 419 I 421
+
Sbjct: 239 L 239
>sp|O33513|CBBY_RHOCA Protein cbbY
Length = 227
Score = 45.8 bits (107), Expect = 5e-05
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Frame = +2
Query: 26 QIIDYFWKNNIPMAIASGSSDISYELK-----TKPHSELFSKIHHVVLSGSDEIVKKSKP 190
++ID + + +AIA+ ++ + + +KP ++F V++ DE+ +K KP
Sbjct: 100 ELIDRAKASGLRLAIATTTTRANVDALIAATFSKPAGDIFE-----VIAAGDEVAQK-KP 153
Query: 191 APDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEET 343
APD+++ A L+ + PP + L FED+ G+ A +A +R V P E T
Sbjct: 154 APDVYLRA-LQGLGLPPAA---CLAFEDSRAGLASARAAGLRVVLTPSEYT 200
>sp|P54607|YHCW_BACSU Hypothetical protein yhcW
Length = 220
Score = 45.1 bits (105), Expect = 8e-05
Identities = 25/73 (34%), Positives = 44/73 (60%)
Frame = +2
Query: 149 VLSGSDEIVKKSKPAPDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWI 328
V+ +D+ V++ KP P++++ AA N +SP L FED+ NG A A M+ V +
Sbjct: 130 VIQTADD-VEEVKPNPELYLLAA----KNLGVSPAECLAFEDSVNGSIAAKRAGMKCVIV 184
Query: 329 PDEETDTTIFQNH 367
P++ T T +F+++
Sbjct: 185 PNKVTGTLMFEDY 197
>sp|P77475|YQAB_ECOLI Phosphatase yqaB
Length = 188
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/93 (35%), Positives = 42/93 (45%)
Frame = +2
Query: 44 WKNNIPMAIASGSSDISYELKTKPHSELFSKIHHVVLSGSDEIVKKSKPAPDIFIEAALR 223
W PMA+ +GS E H L VV + + VK KPAPD F+ A R
Sbjct: 99 WHGRRPMAVGTGSESAIAEALLA-HLGLRHYFDAVVAA---DHVKHHKPAPDTFLLCAQR 154
Query: 224 FINNPPISPRNVLVFEDAANGIKGALSANMRTV 322
+ P +VFEDA GI+ A +A M V
Sbjct: 155 M----GVQPTQCVVFEDADFGIQAARAAGMDAV 183
>sp|P95649|CBBY_RHOSH Protein cbbY
Length = 230
Score = 37.4 bits (85), Expect = 0.017
Identities = 22/66 (33%), Positives = 38/66 (57%)
Frame = +2
Query: 134 KIHHVVLSGSDEIVKKSKPAPDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANM 313
+I V+ +G ++V + KP+PDI+ ALR ++ PP + ED+ NG++ A A +
Sbjct: 136 EIFDVIAAG--DMVAEKKPSPDIY-RLALRELDVPP---ERAVALEDSLNGLRAAKGAGL 189
Query: 314 RTVWIP 331
R + P
Sbjct: 190 RCIVSP 195
>sp|Q7ADF8|YNIC_ECO57 Phosphatase yniC
Length = 222
Score = 36.2 bits (82), Expect = 0.038
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +2
Query: 161 SDEIVKKSKPAPDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEE 340
S E + SKP P ++++ A + + P + ED+ NG+ + +A MR++ +P E
Sbjct: 140 SAEKLPYSKPHPQVYLDCAAKL----GVDPLTCVALEDSVNGMIASKAARMRSIVVPAPE 195
Query: 341 TDTTIFQNHPDVVI 382
QN P V+
Sbjct: 196 A-----QNDPRFVL 204
>sp|P77247|YNIC_ECOLI Phosphatase yniC
Length = 222
Score = 36.2 bits (82), Expect = 0.038
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +2
Query: 161 SDEIVKKSKPAPDIFIEAALRFINNPPISPRNVLVFEDAANGIKGALSANMRTVWIPDEE 340
S E + SKP P ++++ A + + P + ED+ NG+ + +A MR++ +P E
Sbjct: 140 SAEKLPYSKPHPQVYLDCAAKL----GVDPLTCVALEDSVNGMIASKAARMRSIVVPAPE 195
Query: 341 TDTTIFQNHPDVVI 382
QN P V+
Sbjct: 196 A-----QNDPRFVL 204
>sp|O06995|PGMB_BACSU Putative beta-phosphoglucomutase (Beta-PGM)
Length = 226
Score = 34.7 bits (78), Expect = 0.11
Identities = 28/92 (30%), Positives = 39/92 (42%)
Frame = +2
Query: 53 NIPMAIASGSSDISYELKTKPHSELFSKIHHVVLSGSDEIVKKSKPAPDIFIEAALRFIN 232
NI + +AS S + L+ + H +V + K KP PDIF+ AA
Sbjct: 107 NIKIGLASSSRNAPKILR---RLAIIDDFHAIV---DPTTLAKGKPDPDIFLTAAAML-- 158
Query: 233 NPPISPRNVLVFEDAANGIKGALSANMRTVWI 328
+SP + EDA GI SA M V +
Sbjct: 159 --DVSPADCAAIEDAEAGISAIKSAGMFAVGV 188
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,365,319
Number of Sequences: 369166
Number of extensions: 984430
Number of successful extensions: 2536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2528
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)