Planaria EST Database


DrC_01494

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01494
         (791 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25578|PGS1_YEAST  CDP-diacylglycerol--glycerol-3-phospha...    32   2.6  
sp|P19474|RO52_HUMAN  52 kDa Ro protein (Sjogren syndrome ty...    30   5.8  
sp|P40802|PKSI_BACSU  Putative polyketide biosynthesis enoyl...    30   7.5  
sp|Q23175|HM32_CAEEL  Homeobox protein ceh-32                      30   7.5  
sp|Q8VC98|PLEA4_MOUSE  Pleckstrin homology domain-containing...    30   7.5  
sp|P94526|ARAL_BACSU  Arabinose operon protein araL                30   9.8  
>sp|P25578|PGS1_YEAST CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
           (Phosphatidylglycerophosphate synthase) (PGP synthase)
          Length = 521

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 8/211 (3%)
 Frame = +3

Query: 27  ASSAHPFLPEQNAIRNKLREQLTKITGFQELLADIVNNSVQMYH-SHMPILPEEKHTLVM 203
           A++  PF    N I   L++ L     FQ    DI+ +  Q Y      IL  +    + 
Sbjct: 32  AANPSPFGNYLNTITKSLQQNLQTCFHFQAKEIDIIESPSQFYDLLKTKILNSQNRIFIA 91

Query: 204 IIAFG---INLIDSTKSVHGKEPGVNANPMNQKLNLSTLDKIIKECEAPNLSGDMSPCPF 374
            +  G     L+D       K P +  + +     L    ++   C A  LS  ++    
Sbjct: 92  SLYLGKSETELVDCISQALTKNPKLKVSFLLD--GLRGTRELPSACSATLLSSLVAKYGS 149

Query: 375 NYI----INTPNYHSSKWPECNTSRLSSPGVLLDHMARFRAEYTSLTAQPAWHTNLATTR 542
             +      TP YH   W +    +  + G+ L HM  +  +   + +      +  T R
Sbjct: 150 ERVDCRLYKTPAYHG--WKKVLVPKRFNEGLGLQHMKIYGFDNEVILSGANLSNDYFTNR 207

Query: 543 DSSRSKKENKDLYNLMLRASQLLSGWTVQVL 635
                  ++++  N   +  QL+S ++ Q++
Sbjct: 208 QDRYYLFKSRNFSNYYFKLHQLISSFSYQII 238
>sp|P19474|RO52_HUMAN 52 kDa Ro protein (Sjogren syndrome type A antigen) (SS-A)
           (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
           Ro/SS-A) (Tripartite motif protein 21) (RING finger
           protein 81)
          Length = 475

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +3

Query: 528 LATTRDSSRSKKENKDLYNLMLRASQLLSG---WTVQVLDTHTWKLAHCTDS 674
           L  T+ S    +E  D Y ++L A    SG   W V V     W L  C DS
Sbjct: 311 LGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDS 362
>sp|P40802|PKSI_BACSU Putative polyketide biosynthesis enoyl-CoA hydratase homolog pksI
          Length = 249

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 376 LNGHGLISPDRLGASHSLIILSRVDKFNFWFMGFAFTPG 260
           + GHG+     +G    ++ILSR   +   FM + FTPG
Sbjct: 101 MQGHGIGGGFVMGLFADIVILSRESVYTANFMKYGFTPG 139
>sp|Q23175|HM32_CAEEL Homeobox protein ceh-32
          Length = 439

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
 Frame = +3

Query: 195 LVMIIAFGINLIDSTKSVHGKEPGVN---ANPMNQKLNLSTLDKIIKECEAPNLSGDMSP 365
           + M+ A   N   ST S+    P V    A P +   +  T D+I+K CE     GD+  
Sbjct: 29  VAMLQALQANGASSTPSLFPAMPSVIPSLAAPSSPTTSNLTADQIVKTCEQLETDGDVDG 88

Query: 366 CPFNYIINTPNYHSSKWPECNTSRLSSPGVLLDHMARFRAEYTSL---TAQPAWHTNLAT 536
             F ++   P   + +    N + L +  ++  H + FR  Y  L      P +H  L  
Sbjct: 89  L-FRFMCTIPPQKTQE-VAGNEAFLRARALVCFHASHFRELYAILENNKFSPKYHPKLQE 146

Query: 537 TRDSSRSKKENKD 575
               +  +++ K+
Sbjct: 147 MWHEAHYREQEKN 159
>sp|Q8VC98|PLEA4_MOUSE Pleckstrin homology domain-containing protein family A member 4
           (Phosphoinositol 3-phosphate binding protein 1) (PEPP-1)
          Length = 588

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -3

Query: 789 PFVSSRKNSRSQN*DMSQHLKTVSLHSPQLPWDKVDSGANRCSGPASKCGYPKLEQS 619
           P  + +    S+   +S+ L+  S  SP++ W +   G    S P S  G P++ ++
Sbjct: 512 PSPAPQGEESSERESLSESLELSSPQSPEVDWSRPSGGDRALSSPQSGVGSPRVSRA 568
>sp|P94526|ARAL_BACSU Arabinose operon protein araL
          Length = 272

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -1

Query: 776 RGKILGAKIETCHST*KLYLCIVLSFL------GTKWILVRIGAVGQLPSVGIQNLNSP 618
           R K+LGA IET  +   L   +  +FL         W+L   G V +L   G+QN + P
Sbjct: 63  RKKLLGAGIETDVNDIVLSSSVTAAFLKKHYRFSKVWVLGEQGLVDELRLAGVQNASEP 121
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,268,014
Number of Sequences: 369166
Number of extensions: 2308226
Number of successful extensions: 6284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6281
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)