Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01494
(791 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25578|PGS1_YEAST CDP-diacylglycerol--glycerol-3-phospha... 32 2.6
sp|P19474|RO52_HUMAN 52 kDa Ro protein (Sjogren syndrome ty... 30 5.8
sp|P40802|PKSI_BACSU Putative polyketide biosynthesis enoyl... 30 7.5
sp|Q23175|HM32_CAEEL Homeobox protein ceh-32 30 7.5
sp|Q8VC98|PLEA4_MOUSE Pleckstrin homology domain-containing... 30 7.5
sp|P94526|ARAL_BACSU Arabinose operon protein araL 30 9.8
>sp|P25578|PGS1_YEAST CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
(Phosphatidylglycerophosphate synthase) (PGP synthase)
Length = 521
Score = 31.6 bits (70), Expect = 2.6
Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 8/211 (3%)
Frame = +3
Query: 27 ASSAHPFLPEQNAIRNKLREQLTKITGFQELLADIVNNSVQMYH-SHMPILPEEKHTLVM 203
A++ PF N I L++ L FQ DI+ + Q Y IL + +
Sbjct: 32 AANPSPFGNYLNTITKSLQQNLQTCFHFQAKEIDIIESPSQFYDLLKTKILNSQNRIFIA 91
Query: 204 IIAFG---INLIDSTKSVHGKEPGVNANPMNQKLNLSTLDKIIKECEAPNLSGDMSPCPF 374
+ G L+D K P + + + L ++ C A LS ++
Sbjct: 92 SLYLGKSETELVDCISQALTKNPKLKVSFLLD--GLRGTRELPSACSATLLSSLVAKYGS 149
Query: 375 NYI----INTPNYHSSKWPECNTSRLSSPGVLLDHMARFRAEYTSLTAQPAWHTNLATTR 542
+ TP YH W + + + G+ L HM + + + + + T R
Sbjct: 150 ERVDCRLYKTPAYHG--WKKVLVPKRFNEGLGLQHMKIYGFDNEVILSGANLSNDYFTNR 207
Query: 543 DSSRSKKENKDLYNLMLRASQLLSGWTVQVL 635
++++ N + QL+S ++ Q++
Sbjct: 208 QDRYYLFKSRNFSNYYFKLHQLISSFSYQII 238
>sp|P19474|RO52_HUMAN 52 kDa Ro protein (Sjogren syndrome type A antigen) (SS-A)
(Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
Ro/SS-A) (Tripartite motif protein 21) (RING finger
protein 81)
Length = 475
Score = 30.4 bits (67), Expect = 5.8
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +3
Query: 528 LATTRDSSRSKKENKDLYNLMLRASQLLSG---WTVQVLDTHTWKLAHCTDS 674
L T+ S +E D Y ++L A SG W V V W L C DS
Sbjct: 311 LGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDS 362
>sp|P40802|PKSI_BACSU Putative polyketide biosynthesis enoyl-CoA hydratase homolog pksI
Length = 249
Score = 30.0 bits (66), Expect = 7.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 376 LNGHGLISPDRLGASHSLIILSRVDKFNFWFMGFAFTPG 260
+ GHG+ +G ++ILSR + FM + FTPG
Sbjct: 101 MQGHGIGGGFVMGLFADIVILSRESVYTANFMKYGFTPG 139
>sp|Q23175|HM32_CAEEL Homeobox protein ceh-32
Length = 439
Score = 30.0 bits (66), Expect = 7.5
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Frame = +3
Query: 195 LVMIIAFGINLIDSTKSVHGKEPGVN---ANPMNQKLNLSTLDKIIKECEAPNLSGDMSP 365
+ M+ A N ST S+ P V A P + + T D+I+K CE GD+
Sbjct: 29 VAMLQALQANGASSTPSLFPAMPSVIPSLAAPSSPTTSNLTADQIVKTCEQLETDGDVDG 88
Query: 366 CPFNYIINTPNYHSSKWPECNTSRLSSPGVLLDHMARFRAEYTSL---TAQPAWHTNLAT 536
F ++ P + + N + L + ++ H + FR Y L P +H L
Sbjct: 89 L-FRFMCTIPPQKTQE-VAGNEAFLRARALVCFHASHFRELYAILENNKFSPKYHPKLQE 146
Query: 537 TRDSSRSKKENKD 575
+ +++ K+
Sbjct: 147 MWHEAHYREQEKN 159
>sp|Q8VC98|PLEA4_MOUSE Pleckstrin homology domain-containing protein family A member 4
(Phosphoinositol 3-phosphate binding protein 1) (PEPP-1)
Length = 588
Score = 30.0 bits (66), Expect = 7.5
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -3
Query: 789 PFVSSRKNSRSQN*DMSQHLKTVSLHSPQLPWDKVDSGANRCSGPASKCGYPKLEQS 619
P + + S+ +S+ L+ S SP++ W + G S P S G P++ ++
Sbjct: 512 PSPAPQGEESSERESLSESLELSSPQSPEVDWSRPSGGDRALSSPQSGVGSPRVSRA 568
>sp|P94526|ARAL_BACSU Arabinose operon protein araL
Length = 272
Score = 29.6 bits (65), Expect = 9.8
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = -1
Query: 776 RGKILGAKIETCHST*KLYLCIVLSFL------GTKWILVRIGAVGQLPSVGIQNLNSP 618
R K+LGA IET + L + +FL W+L G V +L G+QN + P
Sbjct: 63 RKKLLGAGIETDVNDIVLSSSVTAAFLKKHYRFSKVWVLGEQGLVDELRLAGVQNASEP 121
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,268,014
Number of Sequences: 369166
Number of extensions: 2308226
Number of successful extensions: 6284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6281
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)